Wall clock time and date at job start Tue Mar 31 2020 20:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47128 * 2 1 4 4 H 1.08990 * 109.47083 * 54.34097 * 3 2 1 5 5 C 1.53002 * 109.46810 * 294.34235 * 3 2 1 6 6 N 1.46502 * 109.47065 * 184.99783 * 5 3 2 7 7 C 1.34777 * 119.99714 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00388 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99595 * 180.02562 * 7 6 5 10 10 H 1.09001 * 115.55801 * 34.28185 * 9 7 6 11 11 C 1.53095 * 117.50650 * 248.50312 * 9 7 6 12 12 C 1.52554 * 117.50716 * 180.02562 * 9 7 6 13 13 C 1.53874 * 120.82709 * 357.25927 * 12 9 7 14 14 C 1.54988 * 104.06258 * 192.35647 * 13 12 9 15 15 C 1.54925 * 102.82246 * 37.56051 * 14 13 12 16 16 C 1.53477 * 121.09209 * 217.87712 * 12 9 7 17 17 N 1.46899 * 109.46931 * 174.34710 * 3 2 1 18 18 C 1.46902 * 111.00024 * 272.71560 * 17 3 2 19 19 C 1.50689 * 109.47399 * 182.68201 * 18 17 3 20 20 O 1.21302 * 120.00250 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00382 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00301 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00013 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99960 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00069 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99861 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47359 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47269 * 120.00262 * 26 24 22 29 29 H 1.48499 * 109.47225 * 240.00028 * 26 24 22 30 30 H 1.08996 * 109.46933 * 302.68607 * 1 2 3 31 31 H 1.08999 * 109.47216 * 62.68671 * 1 2 3 32 32 H 1.08995 * 109.46989 * 182.68554 * 1 2 3 33 33 H 1.09003 * 109.47099 * 240.00005 * 2 1 3 34 34 H 1.09003 * 109.47365 * 119.99742 * 2 1 3 35 35 H 1.09004 * 109.47201 * 65.00018 * 5 3 2 36 36 H 1.08998 * 109.47429 * 305.00644 * 5 3 2 37 37 H 0.96993 * 119.99707 * 0.02562 * 6 5 3 38 38 H 1.09002 * 117.50428 * 145.09234 * 11 9 7 39 39 H 1.08995 * 117.51300 * 0.02562 * 11 9 7 40 40 H 1.09006 * 110.50560 * 310.99738 * 13 12 9 41 41 H 1.08999 * 110.51233 * 73.70639 * 13 12 9 42 42 H 1.09000 * 110.73987 * 279.23339 * 14 13 12 43 43 H 1.08997 * 110.90054 * 155.96833 * 14 13 12 44 44 H 1.08999 * 110.48439 * 203.60208 * 15 14 13 45 45 H 1.09004 * 110.59177 * 81.02070 * 15 14 13 46 46 H 1.08998 * 110.07261 * 263.32000 * 16 12 9 47 47 H 1.09005 * 110.06851 * 24.78864 * 16 12 9 48 48 H 1.00900 * 111.00514 * 36.67334 * 17 3 2 49 49 H 1.09002 * 109.46721 * 302.68876 * 18 17 3 50 50 H 1.09001 * 109.46407 * 62.68275 * 18 17 3 51 51 H 0.96998 * 119.99146 * 0.02562 * 21 19 18 52 52 H 0.97002 * 119.99712 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9847 0.8349 5 6 1.6494 2.1215 -1.3143 6 7 2.2387 3.4618 -1.3656 7 6 2.0281 4.2499 -2.4384 8 8 1.3504 3.8498 -3.3611 9 6 2.6349 5.6284 -2.4914 10 1 3.6122 5.7305 -2.0195 11 6 1.6819 6.8239 -2.4115 12 6 2.3595 6.4722 -3.7321 13 6 1.5456 5.9037 -4.9076 14 6 1.7721 6.9249 -6.0513 15 6 3.2559 7.3286 -5.8628 16 6 3.4439 7.3780 -4.3312 17 7 3.5026 1.4448 0.1364 18 6 3.8995 1.4256 1.5507 19 6 5.4014 1.4949 1.6520 20 8 6.0751 1.5549 0.6451 21 7 5.9962 1.4912 2.8614 22 6 7.3626 1.5538 2.9536 23 1 7.9625 1.6063 2.0570 24 6 7.9758 1.5495 4.2005 25 7 7.2459 1.4850 5.2913 26 14 9.8375 1.6354 4.3260 27 1 10.4231 1.7009 2.9629 28 1 10.2268 2.8477 5.0902 29 1 10.3429 0.4264 5.0247 30 1 -0.3633 0.5550 0.8649 31 1 -0.3633 0.4715 -0.9131 32 1 -0.3633 -1.0265 0.0481 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5638 2.1995 -1.3744 36 1 2.0180 1.5301 -2.1524 37 1 2.7811 3.7816 -0.6277 38 1 2.0323 7.7128 -1.8869 39 1 0.6164 6.6133 -2.3203 40 1 1.9219 4.9212 -5.1928 41 1 0.4882 5.8484 -4.6488 42 1 1.1188 7.7892 -5.9321 43 1 1.6195 6.4588 -7.0247 44 1 3.4433 8.3086 -6.3018 45 1 3.9156 6.5815 -6.3041 46 1 3.3189 8.3994 -3.9717 47 1 4.4326 7.0058 -4.0627 48 1 3.9138 0.6717 -0.3650 49 1 3.4608 2.2820 2.0627 50 1 3.5461 0.5047 2.0146 51 1 5.4574 1.4437 3.6666 52 1 7.6740 1.4824 6.1618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481865113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:16 Heat of formation + Delta-G solvation = -70.991721 kcal Electronic energy + Delta-G solvation = -29213.413124 eV Core-core repulsion = 25212.402574 eV Total energy + Delta-G solvation = -4001.010550 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.36645 -38.79674 -38.12681 -37.10764 -34.25587 -34.11775 -33.78495 -32.51450 -31.23225 -28.82095 -28.65950 -26.55177 -25.58249 -24.57627 -23.56357 -23.09992 -20.88505 -20.82926 -20.16711 -19.33269 -18.86267 -17.93459 -16.96986 -16.50191 -15.93510 -15.65425 -15.38249 -15.28037 -15.00818 -14.58195 -14.55130 -14.30813 -13.91444 -13.67811 -13.57021 -13.43477 -13.19759 -13.04413 -12.66452 -12.50598 -12.29056 -12.17144 -12.14850 -11.75023 -11.53662 -11.46463 -11.27071 -11.24588 -11.17697 -11.08571 -10.99730 -10.76627 -10.68369 -10.39403 -10.37172 -10.25797 -9.97839 -9.55436 -9.44873 -8.88087 -8.53803 -8.11798 -7.99761 -6.45429 -3.86220 2.58090 3.13622 3.22704 3.24651 3.31729 3.68006 3.86460 4.01986 4.25290 4.30935 4.46943 4.64333 4.70720 4.73970 4.77736 4.98142 5.01152 5.03086 5.10626 5.17179 5.19366 5.27239 5.33856 5.37396 5.49436 5.53963 5.56343 5.61414 5.66191 5.66736 5.74209 5.77334 5.82508 5.84788 5.85278 5.85906 5.88687 5.97987 6.02132 6.08566 6.09034 6.23327 6.23569 6.36761 6.59519 7.10984 7.52027 7.55092 7.70147 8.02750 8.37458 8.57332 9.14572 9.50495 10.01782 10.72301 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.002437 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.877449 B =11484.555944 C =13703.032917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.152 4.152 3 C 0.072 3.928 4 H 0.083 0.917 5 C 0.135 3.865 6 N -0.708 5.708 7 C 0.542 3.458 8 O -0.548 6.548 9 C -0.181 4.181 10 H 0.124 0.876 11 C -0.142 4.142 12 C -0.093 4.093 13 C -0.074 4.074 14 C -0.128 4.128 15 C -0.122 4.122 16 C -0.091 4.091 17 N -0.663 5.663 18 C 0.050 3.950 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.281 1.281 29 H -0.282 1.282 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.410 0.590 38 H 0.103 0.897 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.063 0.937 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.353 0.647 49 H 0.085 0.915 50 H 0.045 0.955 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.188 7.365 -12.920 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.191 4.191 3 C -0.039 4.039 4 H 0.101 0.899 5 C 0.011 3.989 6 N -0.359 5.359 7 C 0.328 3.672 8 O -0.427 6.427 9 C -0.202 4.202 10 H 0.142 0.858 11 C -0.180 4.180 12 C -0.094 4.094 13 C -0.111 4.111 14 C -0.166 4.166 15 C -0.160 4.160 16 C -0.128 4.128 17 N -0.294 5.294 18 C -0.083 4.083 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.207 1.207 29 H -0.208 1.208 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.245 0.755 38 H 0.121 0.879 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.082 0.918 45 H 0.085 0.915 46 H 0.087 0.913 47 H 0.087 0.913 48 H 0.173 0.827 49 H 0.103 0.897 50 H 0.063 0.937 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.068 7.783 -14.100 22.055 hybrid contribution 0.787 -0.909 1.608 2.008 sum -14.281 6.874 -12.492 20.180 Atomic orbital electron populations 1.21774 0.95295 1.01789 1.02036 1.22221 0.96883 0.97240 1.02806 1.21931 0.89124 0.95174 0.97650 0.89862 1.21333 0.97238 0.83015 0.97332 1.45770 1.53166 1.15648 1.21286 1.19605 0.80050 0.85612 0.81898 1.90651 1.40241 1.75076 1.36698 1.22314 1.01852 0.90563 1.05487 0.85787 1.23013 0.98070 0.96958 0.99922 1.21740 0.99404 0.99003 0.89260 1.21841 0.99118 0.98394 0.91784 1.22563 0.96163 0.99077 0.98765 1.22335 0.97019 1.01191 0.95453 1.21687 0.97407 0.98456 0.95264 1.60141 1.05953 1.52128 1.11222 1.21725 0.95911 1.01055 0.89592 1.19805 0.88581 0.84619 0.84476 1.90540 1.65192 1.55186 1.35643 1.41877 1.07690 1.64209 1.06298 1.19741 0.81732 1.47294 0.94027 0.87888 1.25262 1.00575 0.97330 0.94802 1.69617 1.36134 1.50582 0.97964 0.85808 0.82290 0.77737 0.78571 1.19208 1.20727 1.20764 0.92602 0.92332 0.92721 0.91319 0.91349 0.91408 0.91723 0.75475 0.87905 0.88397 0.89942 0.91642 0.91814 0.91712 0.91776 0.91535 0.91340 0.91257 0.82735 0.89664 0.93740 0.77507 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.62 37.16 0.36 -0.91 16 2 C -0.15 -1.48 5.38 -26.73 -0.14 -1.62 16 3 C 0.07 0.79 2.22 -67.71 -0.15 0.64 16 4 H 0.08 0.87 7.72 -51.93 -0.40 0.47 16 5 C 0.14 1.58 5.01 -4.04 -0.02 1.56 16 6 N -0.71 -8.83 5.39 -60.29 -0.32 -9.16 16 7 C 0.54 7.30 7.61 -10.98 -0.08 7.21 16 8 O -0.55 -8.69 13.70 5.56 0.08 -8.61 16 9 C -0.18 -2.04 6.06 -91.95 -0.56 -2.60 16 10 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 11 C -0.14 -1.35 9.94 -26.92 -0.27 -1.62 16 12 C -0.09 -0.98 2.44 -154.27 -0.38 -1.36 16 13 C -0.07 -0.83 4.77 -25.23 -0.12 -0.95 16 14 C -0.13 -1.14 6.91 -24.67 -0.17 -1.31 16 15 C -0.12 -1.04 6.84 -24.99 -0.17 -1.21 16 16 C -0.09 -0.82 6.54 -25.76 -0.17 -0.99 16 17 N -0.66 -9.55 5.28 -108.00 -0.57 -10.12 16 18 C 0.05 0.80 5.98 -4.98 -0.03 0.77 16 19 C 0.44 9.90 7.83 -10.99 -0.09 9.81 16 20 O -0.58 -15.26 15.84 5.54 0.09 -15.17 16 21 N -0.56 -13.84 5.29 -10.97 -0.06 -13.90 16 22 C -0.30 -8.16 9.68 -14.94 -0.14 -8.31 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 26 Si 0.93 20.78 29.55 -169.99 -5.02 15.76 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.48 6.83 -51.93 -0.35 0.13 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.70 7.55 -51.93 -0.39 0.31 16 35 H 0.07 0.76 6.89 -51.93 -0.36 0.40 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.41 5.05 8.14 -40.82 -0.33 4.72 16 38 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.08 1.10 6.97 -51.93 -0.36 0.74 16 41 H 0.06 0.77 8.00 -51.93 -0.42 0.36 16 42 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.35 5.48 8.25 -39.29 -0.32 5.16 16 49 H 0.09 1.24 7.99 -51.93 -0.41 0.83 16 50 H 0.04 0.65 7.57 -51.93 -0.39 0.26 16 51 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 52 H 0.27 6.86 8.31 -40.82 -0.34 6.52 16 LS Contribution 416.86 15.07 6.28 6.28 Total: -1.00 -31.21 416.86 -10.11 -41.32 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -9.08 Total: 17.40 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -2.23 Total: -0.38 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.23 Total: -56.59 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: 0.16 Total: -23.78 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -31.21 -10.11 -41.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481865113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.675 kcal (2) G-P(sol) polarization free energy of solvation -31.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds