Wall clock time and date at job start Tue Mar 31 2020 20:37:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47128 * 2 1 4 4 H 1.08990 * 109.47083 * 54.34097 * 3 2 1 5 5 C 1.53002 * 109.46810 * 294.34235 * 3 2 1 6 6 N 1.46502 * 109.47065 * 184.99783 * 5 3 2 7 7 C 1.34777 * 119.99714 * 179.97438 * 6 5 3 8 8 O 1.21276 * 120.00388 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99595 * 180.02562 * 7 6 5 10 10 H 1.09001 * 115.55801 * 34.28185 * 9 7 6 11 11 C 1.53095 * 117.50650 * 248.50312 * 9 7 6 12 12 C 1.52554 * 117.50716 * 180.02562 * 9 7 6 13 13 C 1.53874 * 120.82709 * 357.25927 * 12 9 7 14 14 C 1.54988 * 104.06258 * 192.35647 * 13 12 9 15 15 C 1.54925 * 102.82246 * 37.56051 * 14 13 12 16 16 C 1.53477 * 121.09209 * 217.87712 * 12 9 7 17 17 N 1.46899 * 109.46931 * 174.34710 * 3 2 1 18 18 C 1.46902 * 111.00024 * 272.71560 * 17 3 2 19 19 C 1.50689 * 109.47399 * 182.68201 * 18 17 3 20 20 O 1.21302 * 120.00250 * 0.02562 * 19 18 17 21 21 N 1.34780 * 120.00382 * 179.97438 * 19 18 17 22 22 C 1.37095 * 120.00301 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00013 * 0.02562 * 22 21 19 24 24 C 1.38948 * 119.99960 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00069 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99861 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47359 * 0.02562 * 26 24 22 28 28 H 1.48498 * 109.47269 * 120.00262 * 26 24 22 29 29 H 1.48499 * 109.47225 * 240.00028 * 26 24 22 30 30 H 1.08996 * 109.46933 * 302.68607 * 1 2 3 31 31 H 1.08999 * 109.47216 * 62.68671 * 1 2 3 32 32 H 1.08995 * 109.46989 * 182.68554 * 1 2 3 33 33 H 1.09003 * 109.47099 * 240.00005 * 2 1 3 34 34 H 1.09003 * 109.47365 * 119.99742 * 2 1 3 35 35 H 1.09004 * 109.47201 * 65.00018 * 5 3 2 36 36 H 1.08998 * 109.47429 * 305.00644 * 5 3 2 37 37 H 0.96993 * 119.99707 * 0.02562 * 6 5 3 38 38 H 1.09002 * 117.50428 * 145.09234 * 11 9 7 39 39 H 1.08995 * 117.51300 * 0.02562 * 11 9 7 40 40 H 1.09006 * 110.50560 * 310.99738 * 13 12 9 41 41 H 1.08999 * 110.51233 * 73.70639 * 13 12 9 42 42 H 1.09000 * 110.73987 * 279.23339 * 14 13 12 43 43 H 1.08997 * 110.90054 * 155.96833 * 14 13 12 44 44 H 1.08999 * 110.48439 * 203.60208 * 15 14 13 45 45 H 1.09004 * 110.59177 * 81.02070 * 15 14 13 46 46 H 1.08998 * 110.07261 * 263.32000 * 16 12 9 47 47 H 1.09005 * 110.06851 * 24.78864 * 16 12 9 48 48 H 1.00900 * 111.00514 * 36.67334 * 17 3 2 49 49 H 1.09002 * 109.46721 * 302.68876 * 18 17 3 50 50 H 1.09001 * 109.46407 * 62.68275 * 18 17 3 51 51 H 0.96998 * 119.99146 * 0.02562 * 21 19 18 52 52 H 0.97002 * 119.99712 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5963 1.9847 0.8349 5 6 1.6494 2.1215 -1.3143 6 7 2.2387 3.4618 -1.3656 7 6 2.0281 4.2499 -2.4384 8 8 1.3504 3.8498 -3.3611 9 6 2.6349 5.6284 -2.4914 10 1 3.6122 5.7305 -2.0195 11 6 1.6819 6.8239 -2.4115 12 6 2.3595 6.4722 -3.7321 13 6 1.5456 5.9037 -4.9076 14 6 1.7721 6.9249 -6.0513 15 6 3.2559 7.3286 -5.8628 16 6 3.4439 7.3780 -4.3312 17 7 3.5026 1.4448 0.1364 18 6 3.8995 1.4256 1.5507 19 6 5.4014 1.4949 1.6520 20 8 6.0751 1.5549 0.6451 21 7 5.9962 1.4912 2.8614 22 6 7.3626 1.5538 2.9536 23 1 7.9625 1.6063 2.0570 24 6 7.9758 1.5495 4.2005 25 7 7.2459 1.4850 5.2913 26 14 9.8375 1.6354 4.3260 27 1 10.4231 1.7009 2.9629 28 1 10.2268 2.8477 5.0902 29 1 10.3429 0.4264 5.0247 30 1 -0.3633 0.5550 0.8649 31 1 -0.3633 0.4715 -0.9131 32 1 -0.3633 -1.0265 0.0481 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.5638 2.1995 -1.3744 36 1 2.0180 1.5301 -2.1524 37 1 2.7811 3.7816 -0.6277 38 1 2.0323 7.7128 -1.8869 39 1 0.6164 6.6133 -2.3203 40 1 1.9219 4.9212 -5.1928 41 1 0.4882 5.8484 -4.6488 42 1 1.1188 7.7892 -5.9321 43 1 1.6195 6.4588 -7.0247 44 1 3.4433 8.3086 -6.3018 45 1 3.9156 6.5815 -6.3041 46 1 3.3189 8.3994 -3.9717 47 1 4.4326 7.0058 -4.0627 48 1 3.9138 0.6717 -0.3650 49 1 3.4608 2.2820 2.0627 50 1 3.5461 0.5047 2.0146 51 1 5.4574 1.4437 3.6666 52 1 7.6740 1.4824 6.1618 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481865113.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:15 Heat of formation + Delta-G solvation = -91.767535 kcal Electronic energy + Delta-G solvation = -29214.314030 eV Core-core repulsion = 25212.402574 eV Total energy + Delta-G solvation = -4001.911457 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.31614 -40.24587 -39.31275 -38.25143 -35.97485 -35.08374 -34.93960 -33.61124 -33.16772 -29.71142 -29.58787 -27.95839 -26.57336 -25.87894 -24.76492 -23.95221 -21.83943 -21.57697 -21.16128 -21.01387 -19.92004 -19.72116 -18.04371 -17.75014 -17.21904 -16.68780 -16.60300 -16.34599 -16.27223 -15.95808 -15.79382 -15.43636 -15.27650 -15.00871 -14.49913 -14.38920 -14.32562 -14.03199 -13.69213 -13.57475 -13.45274 -13.37897 -13.24607 -13.07357 -12.92927 -12.61109 -12.52685 -12.39105 -12.12058 -12.07761 -11.98071 -11.96530 -11.74256 -11.60479 -11.50077 -11.40379 -11.23850 -10.88372 -10.41592 -10.32896 -9.99882 -9.92610 -9.32741 -8.46271 -5.94312 1.36475 1.42185 1.55714 1.57308 2.07557 2.26354 2.29733 2.81444 2.89084 3.21524 3.47986 3.54828 3.67180 3.80468 3.83613 3.95343 3.97138 4.12698 4.20648 4.30360 4.33333 4.35376 4.37815 4.50386 4.56146 4.60925 4.61879 4.73233 4.76541 4.78578 4.83442 4.88005 4.93002 4.93781 5.05716 5.07975 5.13149 5.13715 5.20403 5.23486 5.35218 5.36973 5.42167 5.44586 5.50790 5.60006 5.88991 6.09805 6.34173 6.61505 6.67009 7.14389 7.33885 7.58528 8.14145 8.71226 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010023 B = 0.002437 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2792.877449 B =11484.555944 C =13703.032917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.147 4.147 3 C 0.082 3.918 4 H 0.098 0.902 5 C 0.138 3.862 6 N -0.705 5.705 7 C 0.535 3.465 8 O -0.578 6.578 9 C -0.196 4.196 10 H 0.128 0.872 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.074 4.074 14 C -0.123 4.123 15 C -0.122 4.122 16 C -0.090 4.090 17 N -0.673 5.673 18 C 0.067 3.933 19 C 0.439 3.561 20 O -0.623 6.623 21 N -0.574 5.574 22 C -0.330 4.330 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.920 5.920 26 Si 0.990 3.010 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.048 0.952 37 H 0.411 0.589 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.064 0.936 48 H 0.345 0.655 49 H 0.109 0.891 50 H 0.067 0.933 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.917 8.464 -12.221 21.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.187 4.187 3 C -0.028 4.028 4 H 0.116 0.884 5 C 0.014 3.986 6 N -0.355 5.355 7 C 0.323 3.677 8 O -0.459 6.459 9 C -0.217 4.217 10 H 0.146 0.854 11 C -0.161 4.161 12 C -0.101 4.101 13 C -0.111 4.111 14 C -0.160 4.160 15 C -0.159 4.159 16 C -0.127 4.127 17 N -0.304 5.304 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.509 6.509 21 N -0.212 5.212 22 C -0.460 4.460 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.561 5.561 26 Si 0.814 3.186 27 H -0.199 1.199 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.095 0.905 36 H 0.066 0.934 37 H 0.247 0.753 38 H 0.144 0.856 39 H 0.114 0.886 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.101 0.899 45 H 0.077 0.923 46 H 0.104 0.896 47 H 0.082 0.918 48 H 0.164 0.836 49 H 0.127 0.873 50 H 0.085 0.915 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.824 8.879 -13.371 22.540 hybrid contribution 0.958 -1.287 1.334 2.087 sum -14.866 7.592 -12.038 20.580 Atomic orbital electron populations 1.21746 0.93963 1.02447 1.02374 1.22160 0.97957 0.95969 1.02601 1.21916 0.86959 0.96243 0.97637 0.88391 1.21340 0.97623 0.82543 0.97118 1.45817 1.52867 1.15792 1.21068 1.20031 0.79678 0.86460 0.81547 1.90638 1.41717 1.75853 1.37670 1.22333 1.02503 0.89975 1.06896 0.85388 1.23092 0.97582 0.96512 0.98867 1.21877 1.00009 0.99069 0.89192 1.21743 0.98321 0.97770 0.93283 1.22546 0.96818 0.98754 0.97930 1.22351 0.96396 1.01978 0.95205 1.21718 0.96513 0.98930 0.95527 1.60102 1.08129 1.52076 1.10126 1.21572 0.90828 1.03138 0.91034 1.20920 0.91248 0.82080 0.83118 1.90513 1.67095 1.56389 1.36883 1.41938 1.06975 1.65035 1.07229 1.19655 0.83195 1.49459 0.93663 0.90494 1.25989 1.04633 0.96463 0.94166 1.69669 1.37642 1.50476 0.98321 0.84914 0.77239 0.78294 0.78173 1.19910 1.19618 1.19720 0.91829 0.92371 0.92006 0.91729 0.91399 0.90487 0.93375 0.75291 0.85606 0.88637 0.92852 0.92810 0.90549 0.91374 0.89911 0.92283 0.89616 0.91758 0.83624 0.87317 0.91512 0.76974 0.91362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 9.62 71.98 0.69 -1.47 16 2 C -0.15 -2.63 5.38 30.60 0.16 -2.47 16 3 C 0.08 1.69 2.22 44.92 0.10 1.79 16 4 H 0.10 1.78 7.72 -2.39 -0.02 1.76 16 5 C 0.14 3.16 5.01 86.38 0.43 3.59 16 6 N -0.71 -17.43 5.39 -463.05 -2.50 -19.93 16 7 C 0.54 14.59 7.61 87.66 0.67 15.26 16 8 O -0.58 -18.91 13.70 -3.02 -0.04 -18.95 16 9 C -0.20 -4.36 6.06 -11.66 -0.07 -4.43 16 10 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 11 C -0.12 -2.16 9.94 30.47 0.30 -1.86 16 12 C -0.10 -2.05 2.44 -52.03 -0.13 -2.18 16 13 C -0.07 -1.67 4.77 31.57 0.15 -1.52 16 14 C -0.12 -2.07 6.91 31.93 0.22 -1.85 16 15 C -0.12 -1.90 6.84 31.72 0.22 -1.69 16 16 C -0.09 -1.49 6.54 31.22 0.20 -1.29 16 17 N -0.67 -18.80 5.28 -495.59 -2.61 -21.42 16 18 C 0.07 2.04 5.98 85.55 0.51 2.55 16 19 C 0.44 19.79 7.83 87.65 0.69 20.48 16 20 O -0.62 -33.35 15.84 -3.10 -0.05 -33.40 16 21 N -0.57 -28.41 5.29 -306.98 -1.62 -30.03 16 22 C -0.33 -18.37 9.68 84.04 0.81 -17.56 16 23 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.21 16 25 N -0.92 -48.71 13.05 21.66 0.28 -48.43 16 26 Si 0.99 42.42 29.55 68.60 2.03 44.44 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.86 6.83 -2.39 -0.02 0.85 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.07 1.25 7.55 -2.39 -0.02 1.23 16 35 H 0.08 1.65 6.89 -2.39 -0.02 1.63 16 36 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.41 9.88 8.14 -92.71 -0.75 9.12 16 38 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.05 1.51 6.97 -2.38 -0.02 1.49 16 41 H 0.05 1.30 8.00 -2.39 -0.02 1.28 16 42 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 48 H 0.34 10.67 8.25 -89.69 -0.74 9.93 16 49 H 0.11 2.88 7.99 -2.39 -0.02 2.86 16 50 H 0.07 1.80 7.57 -2.39 -0.02 1.78 16 51 H 0.40 18.55 7.90 -92.71 -0.73 17.82 16 52 H 0.28 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -68.57 416.86 -0.37 -68.95 By element: Atomic # 1 Polarization: 52.92 SS G_CDS: -1.29 Total: 51.62 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.43 Total: 7.14 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -6.45 Total: -119.81 kcal Atomic # 8 Polarization: -52.26 SS G_CDS: -0.09 Total: -52.35 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Total: -68.57 -0.37 -68.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481865113.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.821 kcal (2) G-P(sol) polarization free energy of solvation -68.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds