Wall clock time and date at job start Tue Mar 31 2020 20:37:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47171 * 2 1 4 4 H 1.09007 * 109.46664 * 305.60853 * 3 2 1 5 5 C 1.52999 * 109.47440 * 65.60408 * 3 2 1 6 6 N 1.46495 * 109.47098 * 175.00107 * 5 3 2 7 7 C 1.34783 * 119.99979 * 180.27698 * 6 5 3 8 8 O 1.21288 * 119.99719 * 359.72857 * 7 6 5 9 9 C 1.50692 * 120.00217 * 179.72334 * 7 6 5 10 10 H 1.09004 * 115.55548 * 11.94123 * 9 7 6 11 11 C 1.53085 * 117.51018 * 157.65340 * 9 7 6 12 12 C 1.52555 * 117.51448 * 226.15608 * 9 7 6 13 13 C 1.53868 * 120.82819 * 142.33779 * 12 9 7 14 14 C 1.54991 * 104.06479 * 192.35349 * 13 12 9 15 15 C 1.54930 * 102.81666 * 37.56992 * 14 13 12 16 16 C 1.53489 * 121.08610 * 2.96495 * 12 9 7 17 17 N 1.46900 * 109.47364 * 185.61071 * 3 2 1 18 18 C 1.46898 * 111.00228 * 86.22387 * 17 3 2 19 19 C 1.50694 * 109.47394 * 174.56616 * 18 17 3 20 20 O 1.21296 * 119.99814 * 359.97438 * 19 18 17 21 21 N 1.34773 * 120.00511 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00637 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99686 * 0.02562 * 22 21 19 24 24 C 1.38947 * 120.00311 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99949 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 119.99877 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47237 * 59.99656 * 26 24 22 28 28 H 1.48503 * 109.46915 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.46753 * 299.99397 * 26 24 22 30 30 H 1.09002 * 109.46973 * 63.44125 * 1 2 3 31 31 H 1.09005 * 109.47037 * 183.43714 * 1 2 3 32 32 H 1.08997 * 109.47182 * 303.43422 * 1 2 3 33 33 H 1.09003 * 109.47413 * 239.99587 * 2 1 3 34 34 H 1.09004 * 109.47225 * 119.99945 * 2 1 3 35 35 H 1.09003 * 109.46826 * 55.00074 * 5 3 2 36 36 H 1.08997 * 109.47610 * 295.00836 * 5 3 2 37 37 H 0.97001 * 120.00139 * 0.02562 * 6 5 3 38 38 H 1.08995 * 117.51776 * 214.91311 * 11 9 7 39 39 H 1.09007 * 117.51301 * 0.02562 * 11 9 7 40 40 H 1.09000 * 110.51284 * 311.00254 * 13 12 9 41 41 H 1.09005 * 110.51186 * 73.70588 * 13 12 9 42 42 H 1.08998 * 110.74398 * 279.24171 * 14 13 12 43 43 H 1.08999 * 110.90123 * 155.96967 * 14 13 12 44 44 H 1.09000 * 110.47855 * 203.59534 * 15 14 13 45 45 H 1.08997 * 110.48092 * 80.96476 * 15 14 13 46 46 H 1.08994 * 110.06652 * 263.31639 * 16 12 9 47 47 H 1.08997 * 110.06914 * 24.79469 * 16 12 9 48 48 H 1.00902 * 110.99651 * 322.27184 * 17 3 2 49 49 H 1.09002 * 109.47203 * 294.56558 * 18 17 3 50 50 H 1.09000 * 109.47194 * 54.56409 * 18 17 3 51 51 H 0.97004 * 119.99746 * 359.97438 * 21 19 18 52 52 H 0.97006 * 119.99724 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9845 -0.8356 5 6 1.6483 2.1220 1.3137 6 7 2.2377 3.4622 1.3649 7 6 2.0304 4.2489 2.4395 8 8 1.3519 3.8491 3.3619 9 6 2.6418 5.6251 2.4950 10 1 3.0628 5.9907 1.5584 11 6 1.9903 6.6513 3.4256 12 6 3.3380 6.0353 3.7889 13 6 4.6238 6.8800 3.7590 14 6 5.1630 6.7967 5.2097 15 6 4.8424 5.3354 5.6122 16 6 3.4699 5.0555 4.9630 17 7 3.5027 1.4447 -0.1354 18 6 3.9007 1.3999 -1.5487 19 6 5.3976 1.5379 -1.6538 20 8 6.0671 1.6620 -0.6499 21 7 5.9925 1.5246 -2.8630 22 6 7.3543 1.6507 -2.9586 23 1 7.9505 1.7603 -2.0648 24 6 7.9675 1.6374 -4.2054 25 7 7.2421 1.5035 -5.2930 26 14 9.8231 1.8086 -4.3355 27 1 10.4756 0.6938 -3.6029 28 1 10.2254 1.7638 -5.7643 29 1 10.2435 3.1036 -3.7428 30 1 -0.3633 0.4595 -0.9192 31 1 -0.3633 -1.0259 0.0616 32 1 -0.3633 0.5662 0.8576 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.0164 1.5309 2.1523 36 1 0.5627 2.1999 1.3729 37 1 2.7801 3.7820 0.6271 38 1 1.9834 7.6919 3.1016 39 1 1.1197 6.3307 3.9980 40 1 5.3435 6.4554 3.0590 41 1 4.3963 7.9127 3.4947 42 1 4.6388 7.4994 5.8573 43 1 6.2376 6.9774 5.2361 44 1 4.7772 5.2440 6.6964 45 1 5.5972 4.6563 5.2159 46 1 2.6722 5.2280 5.6854 47 1 3.4294 4.0287 4.5996 48 1 3.9148 0.6818 0.3807 49 1 3.5922 0.4489 -1.9831 50 1 3.4218 2.2177 -2.0872 51 1 5.4571 1.4257 -3.6659 52 1 7.6703 1.4939 -6.1634 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481865114.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:17 Heat of formation + Delta-G solvation = -93.169041 kcal Electronic energy + Delta-G solvation = -29468.758188 eV Core-core repulsion = 25466.785958 eV Total energy + Delta-G solvation = -4001.972231 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.33766 -40.23541 -39.33873 -38.28821 -35.96590 -35.04617 -34.97703 -33.61364 -33.16145 -29.74839 -29.63662 -27.95496 -26.62234 -25.93912 -24.75121 -23.89062 -21.85555 -21.74486 -21.10639 -20.93232 -19.91146 -19.71948 -17.98950 -17.81247 -17.25082 -16.75583 -16.56042 -16.45696 -16.33296 -16.08308 -15.75369 -15.40944 -15.31196 -15.00468 -14.47875 -14.39976 -14.25026 -14.04038 -13.68921 -13.57835 -13.44247 -13.35740 -13.27020 -13.06099 -12.92094 -12.59458 -12.54498 -12.41478 -12.12639 -12.09060 -12.02264 -11.96447 -11.85402 -11.59904 -11.48087 -11.45586 -11.22548 -10.94933 -10.57993 -10.32644 -9.99322 -9.93332 -9.32269 -8.45422 -5.93670 1.40179 1.42263 1.50252 1.52616 2.08799 2.25537 2.30031 2.87266 2.90429 3.22321 3.45338 3.54567 3.66123 3.79288 3.83332 3.92363 3.93476 4.09063 4.20015 4.26175 4.30391 4.33739 4.36789 4.50110 4.54283 4.56125 4.60448 4.70764 4.73002 4.78028 4.82755 4.85326 4.89993 4.92491 5.02016 5.05908 5.11515 5.13529 5.20089 5.20496 5.26674 5.36040 5.37461 5.42180 5.46333 5.56352 5.88931 6.09933 6.34040 6.62360 6.65038 7.14916 7.31300 7.59408 8.15224 8.71657 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008404 B = 0.002864 C = 0.002259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3331.068896 B = 9775.789538 C =12391.872216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.147 4.147 3 C 0.083 3.917 4 H 0.098 0.902 5 C 0.137 3.863 6 N -0.706 5.706 7 C 0.537 3.463 8 O -0.584 6.584 9 C -0.195 4.195 10 H 0.132 0.868 11 C -0.121 4.121 12 C -0.098 4.098 13 C -0.090 4.090 14 C -0.116 4.116 15 C -0.126 4.126 16 C -0.085 4.085 17 N -0.673 5.673 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.622 6.622 21 N -0.574 5.574 22 C -0.333 4.333 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.272 1.272 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.078 0.922 37 H 0.411 0.589 38 H 0.128 0.872 39 H 0.093 0.907 40 H 0.064 0.936 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.055 0.945 46 H 0.065 0.935 47 H 0.038 0.962 48 H 0.345 0.655 49 H 0.067 0.933 50 H 0.109 0.891 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.429 7.306 12.377 19.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.187 4.187 3 C -0.027 4.027 4 H 0.116 0.884 5 C 0.013 3.987 6 N -0.355 5.355 7 C 0.325 3.675 8 O -0.465 6.465 9 C -0.216 4.216 10 H 0.150 0.850 11 C -0.158 4.158 12 C -0.099 4.099 13 C -0.127 4.127 14 C -0.154 4.154 15 C -0.163 4.163 16 C -0.123 4.123 17 N -0.304 5.304 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.508 6.508 21 N -0.212 5.212 22 C -0.463 4.463 23 H 0.096 0.904 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.813 3.187 27 H -0.198 1.198 28 H -0.196 1.196 29 H -0.197 1.197 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.146 0.854 39 H 0.111 0.889 40 H 0.083 0.917 41 H 0.106 0.894 42 H 0.099 0.901 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.057 0.943 48 H 0.164 0.836 49 H 0.085 0.915 50 H 0.127 0.873 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -13.348 7.754 13.499 20.506 hybrid contribution 0.768 -1.283 -1.329 2.000 sum -12.580 6.471 12.170 18.661 Atomic orbital electron populations 1.21759 0.93995 1.02434 1.02417 1.22162 0.97941 0.95939 1.02636 1.21908 0.86968 0.96281 0.97584 0.88385 1.21353 0.97657 0.82513 0.97169 1.45794 1.52761 1.15914 1.21066 1.19976 0.79546 0.86529 0.81490 1.90632 1.41814 1.75928 1.38143 1.22386 1.07491 0.93723 0.98042 0.84971 1.23095 0.95416 0.97694 0.99590 1.21837 0.95021 0.99786 0.93223 1.21977 0.93552 0.99353 0.97861 1.22466 1.01340 0.95970 0.95587 1.22394 0.95723 0.97582 1.00627 1.21568 0.98025 0.97072 0.95636 1.60064 1.08018 1.52774 1.09510 1.21567 0.91064 1.02894 0.91065 1.20913 0.91141 0.82187 0.83102 1.90510 1.67121 1.56051 1.37099 1.41923 1.07326 1.64546 1.07361 1.19605 0.83713 1.49104 0.93836 0.90439 1.25979 1.04558 0.96441 0.94146 1.69659 1.37898 1.50105 0.98481 0.85045 0.77221 0.78924 0.77515 1.19840 1.19565 1.19693 0.91842 0.91990 0.92348 0.91300 0.91738 0.93410 0.90420 0.75277 0.85368 0.88861 0.91736 0.89449 0.90147 0.90523 0.90535 0.92598 0.91620 0.94273 0.83650 0.91498 0.87347 0.77011 0.91352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.19 9.75 71.98 0.70 -1.49 16 2 C -0.15 -2.63 5.38 30.59 0.16 -2.47 16 3 C 0.08 1.71 2.21 44.91 0.10 1.81 16 4 H 0.10 1.81 7.69 -2.38 -0.02 1.79 16 5 C 0.14 3.19 5.02 86.38 0.43 3.63 16 6 N -0.71 -17.84 5.39 -463.07 -2.50 -20.34 16 7 C 0.54 14.92 6.85 87.65 0.60 15.52 16 8 O -0.58 -19.54 15.09 -3.06 -0.05 -19.59 16 9 C -0.20 -4.41 6.05 -11.66 -0.07 -4.48 16 10 H 0.13 2.59 8.14 -2.38 -0.02 2.57 16 11 C -0.12 -2.28 9.75 30.48 0.30 -1.99 16 12 C -0.10 -2.09 2.43 -52.02 -0.13 -2.22 16 13 C -0.09 -1.61 6.58 31.57 0.21 -1.40 16 14 C -0.12 -1.89 6.91 31.94 0.22 -1.67 16 15 C -0.13 -2.51 6.84 31.72 0.22 -2.29 16 16 C -0.09 -2.06 5.66 31.23 0.18 -1.88 16 17 N -0.67 -18.86 5.23 -495.58 -2.59 -21.45 16 18 C 0.07 2.04 5.99 85.56 0.51 2.55 16 19 C 0.44 19.83 7.83 87.66 0.69 20.51 16 20 O -0.62 -33.31 15.90 -3.08 -0.05 -33.36 16 21 N -0.57 -28.42 5.29 -306.99 -1.62 -30.04 16 22 C -0.33 -18.55 9.68 84.04 0.81 -17.73 16 23 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 24 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 25 N -0.92 -48.82 13.05 21.66 0.28 -48.54 16 26 Si 0.99 42.35 29.55 68.60 2.03 44.38 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 29 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.06 0.88 6.54 -2.39 -0.02 0.86 16 33 H 0.07 1.26 7.52 -2.39 -0.02 1.24 16 34 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.08 1.69 6.75 -2.39 -0.02 1.67 16 37 H 0.41 10.14 8.14 -92.71 -0.75 9.38 16 38 H 0.13 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.09 2.00 7.85 -2.38 -0.02 1.98 16 40 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 41 H 0.09 1.22 8.11 -2.38 -0.02 1.21 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 47 H 0.04 1.17 6.82 -2.39 -0.02 1.15 16 48 H 0.34 10.61 8.36 -89.69 -0.75 9.86 16 49 H 0.07 1.80 7.56 -2.39 -0.02 1.79 16 50 H 0.11 2.88 7.92 -2.39 -0.02 2.86 16 51 H 0.40 18.57 7.90 -92.70 -0.73 17.84 16 52 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -69.03 417.58 -0.39 -69.42 By element: Atomic # 1 Polarization: 54.54 SS G_CDS: -1.30 Total: 53.24 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.40 Total: 6.28 kcal Atomic # 7 Polarization: -113.94 SS G_CDS: -6.43 Total: -120.36 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -0.10 Total: -52.95 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.03 Total: 44.38 kcal Total: -69.03 -0.39 -69.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481865114.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.745 kcal (2) G-P(sol) polarization free energy of solvation -69.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds