Wall clock time and date at job start Tue Mar 31 2020 20:37:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47153 * 2 1 4 4 H 1.08996 * 109.47450 * 305.62201 * 3 2 1 5 5 C 1.53005 * 109.46848 * 65.62179 * 3 2 1 6 6 N 1.46501 * 109.46776 * 175.00152 * 5 3 2 7 7 C 1.34775 * 119.99649 * 179.97438 * 6 5 3 8 8 O 1.21280 * 120.00561 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.99908 * 179.97438 * 7 6 5 10 10 H 1.09000 * 115.55486 * 34.28020 * 9 7 6 11 11 C 1.53085 * 117.51341 * 248.50072 * 9 7 6 12 12 C 1.52552 * 117.51039 * 179.97438 * 9 7 6 13 13 C 1.53875 * 120.82623 * 357.25456 * 12 9 7 14 14 C 1.54989 * 104.06507 * 192.35959 * 13 12 9 15 15 C 1.54924 * 102.81908 * 37.56560 * 14 13 12 16 16 C 1.53490 * 121.08942 * 217.88581 * 12 9 7 17 17 N 1.46899 * 109.47170 * 185.61912 * 3 2 1 18 18 C 1.46898 * 111.00058 * 86.17918 * 17 3 2 19 19 C 1.50697 * 109.46988 * 176.17844 * 18 17 3 20 20 O 1.21293 * 120.00437 * 0.02562 * 19 18 17 21 21 N 1.34773 * 119.99850 * 179.97438 * 19 18 17 22 22 C 1.37101 * 120.00138 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99582 * 0.02562 * 22 21 19 24 24 C 1.38954 * 120.00093 * 179.72693 * 22 21 19 25 25 N 1.31413 * 119.99769 * 0.27302 * 24 22 21 26 26 Si 1.86800 * 119.99898 * 180.27924 * 24 22 21 27 27 H 1.48499 * 109.47449 * 59.99864 * 26 24 22 28 28 H 1.48504 * 109.46868 * 180.02562 * 26 24 22 29 29 H 1.48507 * 109.46764 * 299.99674 * 26 24 22 30 30 H 1.09007 * 109.47049 * 54.29766 * 1 2 3 31 31 H 1.08995 * 109.47326 * 174.29389 * 1 2 3 32 32 H 1.09002 * 109.47008 * 294.30086 * 1 2 3 33 33 H 1.08995 * 109.46932 * 240.00257 * 2 1 3 34 34 H 1.09001 * 109.46647 * 119.99974 * 2 1 3 35 35 H 1.09008 * 109.46974 * 294.99461 * 5 3 2 36 36 H 1.08998 * 109.47455 * 54.99728 * 5 3 2 37 37 H 0.96999 * 119.99980 * 359.97438 * 6 5 3 38 38 H 1.09000 * 117.50752 * 0.02562 * 11 9 7 39 39 H 1.09002 * 117.51010 * 145.08204 * 11 9 7 40 40 H 1.08997 * 110.50794 * 311.00399 * 13 12 9 41 41 H 1.09002 * 110.50830 * 73.71320 * 13 12 9 42 42 H 1.09005 * 110.74377 * 279.23766 * 14 13 12 43 43 H 1.08994 * 110.89848 * 155.97143 * 14 13 12 44 44 H 1.09001 * 110.48462 * 203.59529 * 15 14 13 45 45 H 1.09001 * 110.59277 * 81.02459 * 15 14 13 46 46 H 1.09001 * 110.06756 * 263.30870 * 16 12 9 47 47 H 1.08995 * 110.07112 * 24.84072 * 16 12 9 48 48 H 1.00895 * 110.99926 * 210.13913 * 17 3 2 49 49 H 1.09002 * 109.46773 * 56.17816 * 18 17 3 50 50 H 1.08999 * 109.47095 * 296.17813 * 18 17 3 51 51 H 0.96999 * 120.00430 * 0.02562 * 21 19 18 52 52 H 0.97006 * 119.99619 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5969 1.9846 -0.8353 5 6 1.6486 2.1218 1.3140 6 7 2.2380 3.4620 1.3652 7 6 2.0260 4.2508 2.4373 8 8 1.3477 3.8510 3.3597 9 6 2.6327 5.6293 2.4903 10 1 2.7063 6.1477 1.5343 11 6 3.7426 5.8744 3.5157 12 6 2.3556 6.4739 3.7301 13 6 1.4368 5.9537 4.8494 14 6 1.1707 7.2018 5.7289 15 6 1.0589 8.3407 4.6845 16 6 2.1219 7.9871 3.6223 17 7 3.5027 1.4448 -0.1356 18 6 3.9005 1.3989 -1.5490 19 6 5.4007 1.4971 -1.6520 20 8 6.0726 1.5952 -0.6470 21 7 5.9960 1.4750 -2.8610 22 6 7.3609 1.5638 -2.9548 23 1 7.9591 1.6511 -2.0598 24 6 7.9750 1.5353 -4.2009 25 7 7.2471 1.4285 -5.2898 26 14 9.8352 1.6485 -4.3282 27 1 10.4515 0.5115 -3.5984 28 1 10.2376 1.5969 -5.7568 29 1 10.2953 2.9279 -3.7308 30 1 -0.3633 0.5998 -0.8346 31 1 -0.3634 -1.0225 -0.1022 32 1 -0.3633 0.4229 0.9366 33 1 1.8933 -0.5138 -0.8900 34 1 1.8932 -0.5138 0.8900 35 1 0.5630 2.1998 1.3733 36 1 2.0168 1.5306 2.1524 37 1 2.7808 3.7817 0.6276 38 1 4.0342 5.0385 4.1516 39 1 4.5469 6.5542 3.2343 40 1 0.5039 5.5744 4.4323 41 1 1.9405 5.1791 5.4279 42 1 2.0047 7.3809 6.4075 43 1 0.2390 7.0946 6.2843 44 1 1.2843 9.3030 5.1440 45 1 0.0644 8.3557 4.2386 46 1 3.0481 8.5241 3.8268 47 1 1.7547 8.2389 2.6274 48 1 3.9076 2.2440 0.3283 49 1 3.4442 2.2330 -2.0820 50 1 3.5667 0.4597 -1.9900 51 1 5.4588 1.3962 -3.6648 52 1 7.6758 1.4089 -6.1598 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481865116.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:20 Heat of formation + Delta-G solvation = -87.996702 kcal Electronic energy + Delta-G solvation = -29239.824211 eV Core-core repulsion = 25238.076269 eV Total energy + Delta-G solvation = -4001.747941 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.45132 -40.30286 -39.41540 -38.25981 -35.99916 -35.14312 -34.94595 -33.76638 -33.21417 -29.81852 -29.60281 -27.93425 -26.61218 -25.85438 -25.02069 -24.08326 -21.61725 -21.58150 -21.18332 -21.06715 -19.96194 -19.77046 -18.29447 -17.81027 -17.21914 -16.78991 -16.65833 -16.38082 -16.33015 -15.96903 -15.88060 -15.56597 -15.34063 -14.96423 -14.65628 -14.46363 -14.32656 -13.95354 -13.87238 -13.58344 -13.49451 -13.34469 -13.28237 -13.12614 -12.90462 -12.63430 -12.45329 -12.40964 -12.12666 -12.08272 -11.98110 -11.96722 -11.76611 -11.52117 -11.48768 -11.41183 -11.28360 -10.96160 -10.47554 -10.35065 -10.14806 -10.02005 -9.40158 -8.46820 -5.95374 1.39595 1.42142 1.45257 1.52599 2.03483 2.06209 2.28709 2.77751 2.84806 3.20708 3.41892 3.44881 3.63664 3.65710 3.79046 3.93574 3.97687 4.08660 4.19072 4.27210 4.29218 4.31343 4.41271 4.46017 4.57906 4.59028 4.60806 4.68761 4.73650 4.76170 4.79220 4.87101 4.91079 4.95428 5.00977 5.06277 5.11112 5.22161 5.22313 5.28101 5.32285 5.34342 5.40810 5.43414 5.48027 5.52060 5.86942 6.07573 6.32935 6.40932 6.59514 7.12289 7.16498 7.55749 8.10783 8.70114 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010707 B = 0.002382 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2614.542924 B =11749.580569 C =13863.781663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.109 4.109 3 C 0.084 3.916 4 H 0.068 0.932 5 C 0.125 3.875 6 N -0.723 5.723 7 C 0.540 3.460 8 O -0.568 6.568 9 C -0.191 4.191 10 H 0.142 0.858 11 C -0.138 4.138 12 C -0.094 4.094 13 C -0.076 4.076 14 C -0.125 4.125 15 C -0.120 4.120 16 C -0.088 4.088 17 N -0.680 5.680 18 C 0.064 3.936 19 C 0.436 3.564 20 O -0.624 6.624 21 N -0.571 5.571 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.274 1.274 28 H -0.271 1.271 29 H -0.271 1.271 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.405 0.595 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.074 0.926 48 H 0.344 0.656 49 H 0.072 0.928 50 H 0.104 0.896 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.097 10.618 12.222 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.148 4.148 3 C -0.026 4.026 4 H 0.085 0.915 5 C 0.001 3.999 6 N -0.376 5.376 7 C 0.328 3.672 8 O -0.447 6.447 9 C -0.212 4.212 10 H 0.159 0.841 11 C -0.175 4.175 12 C -0.095 4.095 13 C -0.113 4.113 14 C -0.162 4.162 15 C -0.157 4.157 16 C -0.125 4.125 17 N -0.315 5.315 18 C -0.068 4.068 19 C 0.224 3.776 20 O -0.510 6.510 21 N -0.208 5.208 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.199 1.199 28 H -0.195 1.195 29 H -0.196 1.196 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.241 0.759 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.084 0.916 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.165 0.835 49 H 0.090 0.910 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -16.033 9.700 13.410 23.043 hybrid contribution 0.914 0.474 -1.370 1.714 sum -15.119 10.174 12.039 21.841 Atomic orbital electron populations 1.21796 0.94056 1.02603 1.02211 1.21475 0.96251 0.94400 1.02690 1.21907 0.86800 0.97638 0.96253 0.91459 1.21557 0.98793 0.81970 0.97605 1.46022 1.53593 1.16331 1.21608 1.20068 0.79504 0.86334 0.81266 1.90664 1.40770 1.75645 1.37617 1.22377 1.06596 0.94242 0.98009 0.84070 1.23107 0.91962 1.03032 0.99403 1.21897 0.97422 0.95288 0.94868 1.21771 0.98351 0.96690 0.94535 1.22552 1.01794 0.94423 0.97474 1.22346 0.98835 0.98667 0.95887 1.21722 1.00106 0.90567 1.00097 1.60121 1.08841 1.50199 1.12339 1.21628 0.90880 1.03543 0.90715 1.20849 0.91148 0.82401 0.83209 1.90504 1.67040 1.56536 1.36938 1.41915 1.07180 1.64463 1.07243 1.19613 0.83277 1.49549 0.93872 0.90350 1.26017 1.04733 0.96302 0.94133 1.69663 1.37886 1.49939 0.98470 0.85017 0.77026 0.78947 0.77537 1.19900 1.19531 1.19578 0.91927 0.91705 0.92418 0.91640 0.92098 0.89757 0.92325 0.75882 0.89574 0.85787 0.92115 0.93488 0.91112 0.91184 0.90061 0.91595 0.90015 0.90759 0.83519 0.90990 0.87829 0.76924 0.91289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.54 71.98 0.69 -1.67 16 2 C -0.11 -2.26 5.65 30.60 0.17 -2.09 16 3 C 0.08 1.83 2.27 44.92 0.10 1.94 16 4 H 0.07 1.29 7.72 -2.39 -0.02 1.27 16 5 C 0.12 2.81 4.95 86.38 0.43 3.23 16 6 N -0.72 -16.26 4.98 -463.04 -2.31 -18.57 16 7 C 0.54 13.60 7.61 87.66 0.67 14.26 16 8 O -0.57 -17.65 13.70 -3.03 -0.04 -17.69 16 9 C -0.19 -3.82 6.06 -11.66 -0.07 -3.89 16 10 H 0.14 2.22 8.14 -2.39 -0.02 2.20 16 11 C -0.14 -2.63 9.94 30.49 0.30 -2.33 16 12 C -0.09 -1.77 2.45 -52.00 -0.13 -1.90 16 13 C -0.08 -1.63 4.77 31.57 0.15 -1.48 16 14 C -0.12 -1.96 6.91 31.93 0.22 -1.74 16 15 C -0.12 -1.56 6.84 31.72 0.22 -1.34 16 16 C -0.09 -1.22 6.55 31.23 0.20 -1.02 16 17 N -0.68 -20.28 5.99 -495.57 -2.97 -23.25 16 18 C 0.06 2.07 6.01 85.56 0.51 2.58 16 19 C 0.44 20.03 7.81 87.66 0.68 20.72 16 20 O -0.62 -33.70 15.69 -3.07 -0.05 -33.75 16 21 N -0.57 -28.46 5.29 -306.98 -1.62 -30.08 16 22 C -0.33 -18.59 9.68 84.04 0.81 -17.77 16 23 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.92 -48.66 13.05 21.66 0.28 -48.38 16 26 Si 0.99 42.28 29.55 68.60 2.03 44.30 16 27 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 28 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 29 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.06 0.89 6.98 -2.39 -0.02 0.88 16 33 H 0.06 1.42 7.49 -2.39 -0.02 1.40 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.08 1.77 6.97 -2.38 -0.02 1.75 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.41 8.21 7.39 -92.71 -0.69 7.53 16 38 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.54 6.97 -2.39 -0.02 1.53 16 41 H 0.05 1.16 8.00 -2.39 -0.02 1.14 16 42 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 48 H 0.34 10.90 6.27 -89.70 -0.56 10.34 16 49 H 0.07 1.94 7.96 -2.39 -0.02 1.92 16 50 H 0.10 3.05 7.52 -2.39 -0.02 3.03 16 51 H 0.40 18.71 7.90 -92.71 -0.73 17.98 16 52 H 0.28 13.82 8.31 -92.70 -0.77 13.05 16 Total: -1.00 -68.89 414.59 -0.29 -69.18 By element: Atomic # 1 Polarization: 51.92 SS G_CDS: -1.04 Total: 50.87 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: 5.43 Total: 7.36 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -6.62 Total: -120.27 kcal Atomic # 8 Polarization: -51.35 SS G_CDS: -0.09 Total: -51.44 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -68.89 -0.29 -69.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481865116.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.821 kcal (2) G-P(sol) polarization free energy of solvation -68.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds