Wall clock time and date at job start Tue Mar 31 2020 19:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.47005 * 2 1 4 4 H 1.08998 * 115.55061 * 29.27456 * 3 2 1 5 5 C 1.53000 * 117.49591 * 243.60804 * 3 2 1 6 6 C 1.52998 * 117.49788 * 174.98490 * 3 2 1 7 7 H 1.08998 * 117.49942 * 359.97438 * 6 3 2 8 8 C 1.50698 * 117.49799 * 214.97832 * 6 3 2 9 9 O 1.21281 * 120.00025 * 0.02562 * 8 6 3 10 10 N 1.34777 * 119.99985 * 179.97438 * 8 6 3 11 11 C 1.46501 * 120.00289 * 180.02562 * 10 8 6 12 12 C 1.52992 * 109.47453 * 174.90608 * 11 10 8 13 13 N 1.46900 * 110.01936 * 304.01185 * 12 11 10 14 14 C 1.46898 * 110.99780 * 303.42461 * 13 12 11 15 15 C 1.50697 * 109.47324 * 176.87980 * 14 13 12 16 16 O 1.21288 * 119.99773 * 0.02562 * 15 14 13 17 17 N 1.34776 * 120.00293 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00203 * 179.97438 * 17 15 14 19 19 H 1.08002 * 120.00116 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00060 * 179.97438 * 18 17 15 21 21 N 1.31417 * 120.00095 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00164 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.46951 * 59.99872 * 22 20 18 24 24 H 1.48496 * 109.47411 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47329 * 300.00017 * 22 20 18 26 26 C 1.54269 * 110.03307 * 182.61543 * 12 11 10 27 27 C 1.54970 * 104.16047 * 217.13760 * 26 12 11 28 28 C 1.54882 * 102.77545 * 37.88782 * 27 26 12 29 29 C 1.53878 * 110.03307 * 65.40175 * 12 11 10 30 30 H 1.09002 * 109.46990 * 300.00599 * 1 2 3 31 31 H 1.09002 * 109.46844 * 60.00083 * 1 2 3 32 32 H 1.08999 * 109.47151 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.47179 * 240.00178 * 2 1 3 34 34 H 1.08993 * 109.46768 * 119.99769 * 2 1 3 35 35 H 1.08993 * 117.50291 * 359.97438 * 5 3 2 36 36 H 1.09005 * 117.49585 * 145.02503 * 5 3 2 37 37 H 0.97001 * 119.99874 * 359.97438 * 10 8 6 38 38 H 1.09008 * 109.46735 * 294.91050 * 11 10 8 39 39 H 1.09002 * 109.47007 * 54.90000 * 11 10 8 40 40 H 1.00897 * 111.00087 * 67.37797 * 13 12 11 41 41 H 1.08998 * 109.47366 * 296.88376 * 14 13 12 42 42 H 1.09011 * 109.47386 * 56.88147 * 14 13 12 43 43 H 0.97002 * 119.99562 * 0.02562 * 17 15 14 44 44 H 0.96994 * 119.99685 * 179.97438 * 21 20 18 45 45 H 1.08997 * 110.48769 * 335.78811 * 26 12 11 46 46 H 1.08998 * 110.47872 * 98.42937 * 26 12 11 47 47 H 1.09000 * 110.71802 * 279.57320 * 27 26 12 48 48 H 1.08996 * 110.91981 * 156.30201 * 27 26 12 49 49 H 1.09000 * 110.48501 * 203.39948 * 28 27 26 50 50 H 1.09002 * 110.48779 * 80.76667 * 28 27 26 51 51 H 1.08997 * 110.03194 * 238.57022 * 29 12 11 52 52 H 1.09001 * 110.02961 * 0.02562 * 29 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4809 5 6 2.8443 1.9075 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7720 0.1971 8 6 4.0226 2.8621 0.8918 9 8 3.2154 3.6166 1.3919 10 7 5.3422 3.1001 1.0283 11 6 5.8015 4.2704 1.7803 12 6 7.3271 4.2385 1.8918 13 7 7.7603 2.9747 2.5025 14 6 7.1292 2.7806 3.8148 15 6 7.5364 1.4422 4.3751 16 8 8.2796 0.7212 3.7436 17 7 7.0747 1.0465 5.5779 18 6 7.4447 -0.1713 6.0873 19 1 8.1065 -0.8134 5.5250 20 6 6.9692 -0.5790 7.3276 21 7 6.1651 0.2029 8.0125 22 14 7.4738 -2.2380 8.0221 23 1 8.9507 -2.2836 8.1714 24 1 6.8364 -2.4339 9.3489 25 1 7.0363 -3.3153 7.0983 26 6 7.8202 5.4306 2.7377 27 6 9.1385 5.8649 2.0485 28 6 8.8170 5.6773 0.5450 29 6 7.9608 4.3949 0.4983 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.0104 1.1856 -2.0153 36 1 2.7217 2.9427 -1.5343 37 1 5.9877 2.4961 0.6292 38 1 5.4939 5.1789 1.2622 39 1 5.3638 4.2556 2.7785 40 1 7.5713 2.1943 1.8915 41 1 7.4503 3.5713 4.4929 42 1 6.0452 2.8140 3.7052 43 1 6.4800 1.6231 6.0827 44 1 5.8329 -0.0820 8.8781 45 1 7.0926 6.2418 2.7144 46 1 8.0107 5.1170 3.7640 47 1 9.9627 5.2188 2.3508 48 1 9.3670 6.9078 2.2675 49 1 9.7348 5.5443 -0.0277 50 1 8.2504 6.5283 0.1670 51 1 8.5904 3.5335 0.2757 52 1 7.1815 4.4941 -0.2573 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482231201.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:12 Heat of formation + Delta-G solvation = -65.932564 kcal Electronic energy + Delta-G solvation = -30063.739797 eV Core-core repulsion = 26062.948628 eV Total energy + Delta-G solvation = -4000.791169 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.44568 -39.32314 -37.92738 -37.12238 -34.78060 -34.04428 -33.23403 -32.22548 -31.21617 -29.25631 -28.82519 -26.65383 -25.34884 -24.16577 -23.88882 -23.18243 -21.03063 -20.59968 -20.05852 -19.24865 -18.93341 -17.88091 -17.58853 -16.64326 -16.03605 -15.60503 -15.41462 -15.05347 -14.85676 -14.73106 -14.62201 -14.33408 -14.29030 -14.00514 -13.52776 -13.34156 -13.12636 -12.96346 -12.65346 -12.61067 -12.31739 -12.17523 -11.67974 -11.57003 -11.54704 -11.34196 -11.22900 -11.21443 -11.13433 -11.05802 -10.87133 -10.76865 -10.56711 -10.48078 -10.44593 -10.22794 -10.21365 -9.84225 -9.50290 -9.14660 -8.46744 -8.10614 -7.96238 -6.41377 -3.82559 2.43595 3.01258 3.19680 3.25678 3.29735 3.64216 3.89768 4.06556 4.28149 4.37357 4.47246 4.51642 4.56662 4.62464 4.76934 4.96173 5.01900 5.09432 5.12660 5.14829 5.24345 5.25214 5.26469 5.41601 5.42337 5.43024 5.57189 5.62728 5.66758 5.70648 5.72000 5.79673 5.81825 5.85485 5.87369 5.90103 5.95550 6.00201 6.03987 6.09685 6.16332 6.19362 6.30389 6.33303 6.38778 7.19810 7.39288 7.54741 7.59586 8.05507 8.16737 8.60620 9.17328 9.54003 10.04971 10.76162 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.006347 B = 0.003900 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4410.636666 B = 7177.907394 C =10789.255685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 C -0.115 4.115 4 H 0.117 0.883 5 C -0.149 4.149 6 C -0.193 4.193 7 H 0.125 0.875 8 C 0.545 3.455 9 O -0.542 6.542 10 N -0.723 5.723 11 C 0.090 3.910 12 C 0.101 3.899 13 N -0.647 5.647 14 C 0.043 3.957 15 C 0.441 3.559 16 O -0.586 6.586 17 N -0.561 5.561 18 C -0.301 4.301 19 H 0.102 0.898 20 C 0.023 3.977 21 N -0.900 5.900 22 Si 0.930 3.070 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.274 1.274 26 C -0.111 4.111 27 C -0.117 4.117 28 C -0.119 4.119 29 C -0.117 4.117 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.400 0.600 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.346 0.654 41 H 0.088 0.912 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.062 0.938 49 H 0.064 0.936 50 H 0.061 0.939 51 H 0.078 0.922 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.712 8.537 -17.612 20.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.134 4.134 3 C -0.133 4.133 4 H 0.135 0.865 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.143 0.857 8 C 0.332 3.668 9 O -0.419 6.419 10 N -0.375 5.375 11 C -0.036 4.036 12 C 0.009 3.991 13 N -0.279 5.279 14 C -0.090 4.090 15 C 0.226 3.774 16 O -0.471 6.471 17 N -0.198 5.198 18 C -0.431 4.431 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.541 5.541 22 Si 0.757 3.243 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.150 4.150 27 C -0.154 4.154 28 C -0.157 4.157 29 C -0.155 4.155 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.166 0.834 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.093 0.907 48 H 0.081 0.919 49 H 0.083 0.917 50 H 0.080 0.920 51 H 0.096 0.904 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.295 8.820 -17.197 19.798 hybrid contribution -0.685 -0.994 0.447 1.287 sum -4.980 7.826 -16.750 19.147 Atomic orbital electron populations 1.21736 0.95183 1.01675 1.02043 1.21174 0.96284 0.93575 1.02407 1.22467 0.91323 0.98826 1.00720 0.86467 1.23091 1.02267 1.02951 0.90319 1.22318 0.98089 0.99050 1.01914 0.85715 1.19643 0.82072 0.85447 0.79669 1.90689 1.53910 1.48786 1.48486 1.45878 1.07110 1.28656 1.55846 1.22213 0.96086 0.88242 0.97016 1.21946 0.90029 0.92172 0.94967 1.60426 1.60544 1.03068 1.03878 1.21793 0.96968 0.98074 0.92118 1.19769 0.85737 0.88242 0.83611 1.90511 1.39807 1.56263 1.60491 1.41850 1.43261 1.18328 1.16335 1.19642 1.27488 0.94430 1.01493 0.87996 1.25262 0.96531 0.99673 0.96373 1.69609 1.32832 1.37422 1.14281 0.85926 0.78854 0.81609 0.77870 1.19874 1.20955 1.19929 1.22426 0.97182 0.95572 0.99780 1.22416 0.97797 1.00650 0.94578 1.22279 0.99333 0.97001 0.97069 1.22275 0.99170 0.99292 0.94738 0.92441 0.92661 0.92578 0.91648 0.91089 0.87820 0.88457 0.76535 0.91366 0.90739 0.83389 0.89368 0.93491 0.77478 0.91790 0.91364 0.90277 0.90708 0.91923 0.91682 0.92005 0.90366 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.87 37.16 0.37 -0.86 16 2 C -0.10 -0.88 6.22 -26.73 -0.17 -1.05 16 3 C -0.11 -1.20 5.25 -90.62 -0.48 -1.68 16 4 H 0.12 1.43 7.60 -51.93 -0.39 1.03 16 5 C -0.15 -1.32 9.88 -26.73 -0.26 -1.58 16 6 C -0.19 -2.11 5.91 -91.77 -0.54 -2.66 16 7 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 8 C 0.55 7.49 7.61 -10.99 -0.08 7.40 16 9 O -0.54 -9.38 16.25 5.56 0.09 -9.29 16 10 N -0.72 -8.65 5.05 -60.29 -0.30 -8.96 16 11 C 0.09 1.10 3.63 -4.05 -0.01 1.09 16 12 C 0.10 1.18 0.55 -130.48 -0.07 1.11 16 13 N -0.65 -9.73 5.62 -100.08 -0.56 -10.29 16 14 C 0.04 0.75 5.50 -4.98 -0.03 0.72 16 15 C 0.44 10.34 7.81 -10.99 -0.09 10.25 16 16 O -0.59 -15.58 15.71 5.55 0.09 -15.50 16 17 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 18 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.54 16 21 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 22 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 26 C -0.11 -1.24 5.87 -25.03 -0.15 -1.39 16 27 C -0.12 -1.18 6.91 -24.70 -0.17 -1.35 16 28 C -0.12 -1.08 6.83 -25.08 -0.17 -1.25 16 29 C -0.12 -1.16 5.74 -25.61 -0.15 -1.30 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 34 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.10 0.72 8.03 -51.93 -0.42 0.31 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 4.18 7.15 -40.82 -0.29 3.89 16 38 H 0.07 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.07 1.07 6.56 -51.93 -0.34 0.73 16 40 H 0.35 5.35 7.03 -39.29 -0.28 5.07 16 41 H 0.09 1.46 6.32 -51.93 -0.33 1.13 16 42 H 0.05 0.81 6.20 -51.92 -0.32 0.49 16 43 H 0.39 9.72 7.90 -40.82 -0.32 9.39 16 44 H 0.27 7.10 8.31 -40.82 -0.34 6.76 16 45 H 0.07 0.68 7.85 -51.93 -0.41 0.27 16 46 H 0.08 0.99 6.07 -51.93 -0.32 0.68 16 47 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 51 H 0.08 0.82 7.88 -51.93 -0.41 0.42 16 52 H 0.06 0.59 7.55 -51.93 -0.39 0.20 16 LS Contribution 413.65 15.07 6.23 6.23 Total: -1.00 -32.39 413.65 -9.84 -42.23 By element: Atomic # 1 Polarization: 27.21 SS G_CDS: -8.79 Total: 18.42 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.24 Total: -0.58 kcal Atomic # 7 Polarization: -57.44 SS G_CDS: -0.20 Total: -57.64 kcal Atomic # 8 Polarization: -24.96 SS G_CDS: 0.18 Total: -24.78 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -32.39 -9.84 -42.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482231201.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.700 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds