Wall clock time and date at job start Tue Mar 31 2020 20:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47345 * 2 1 4 4 H 1.09003 * 109.49913 * 55.06358 * 3 2 1 5 5 C 1.53186 * 109.50023 * 294.99911 * 3 2 1 6 6 N 1.46923 * 108.77662 * 294.68659 * 5 3 2 7 7 C 1.34775 * 120.63464 * 126.36798 * 6 5 3 8 8 O 1.21608 * 120.00027 * 354.48162 * 7 6 5 9 9 C 1.47102 * 120.00118 * 174.48491 * 7 6 5 10 10 C 1.32996 * 119.99969 * 173.30701 * 9 7 6 11 11 C 1.50698 * 120.00059 * 352.13252 * 10 9 7 12 12 C 1.50700 * 119.99663 * 172.13178 * 10 9 7 13 13 C 1.46927 * 118.73654 * 306.38907 * 6 5 3 14 14 C 1.53190 * 108.77619 * 53.60653 * 13 6 5 15 15 C 1.53044 * 109.33826 * 305.35006 * 14 13 6 16 16 H 1.09000 * 109.45987 * 301.35488 * 15 14 13 17 17 N 1.46906 * 109.45780 * 181.40049 * 15 14 13 18 18 C 1.46903 * 110.99937 * 84.99956 * 17 15 14 19 19 C 1.50692 * 109.47157 * 179.97438 * 18 17 15 20 20 O 1.21300 * 120.00029 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00428 * 180.02562 * 19 18 17 22 22 C 1.37092 * 120.00301 * 180.02562 * 21 19 18 23 23 H 1.08003 * 120.00189 * 359.97438 * 22 21 19 24 24 C 1.38954 * 119.99943 * 179.97438 * 22 21 19 25 25 N 1.31407 * 119.99988 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 119.99811 * 180.02562 * 24 22 21 27 27 H 1.48499 * 109.47768 * 59.99958 * 26 24 22 28 28 H 1.48501 * 109.47102 * 180.02562 * 26 24 22 29 29 H 1.48503 * 109.47108 * 299.99387 * 26 24 22 30 30 H 1.09001 * 109.47123 * 59.99776 * 1 2 3 31 31 H 1.08999 * 109.47410 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47351 * 300.00370 * 1 2 3 33 33 H 1.09000 * 109.46868 * 239.99628 * 2 1 3 34 34 H 1.08998 * 109.46622 * 120.00194 * 2 1 3 35 35 H 1.09001 * 109.59194 * 174.89359 * 5 3 2 36 36 H 1.09002 * 109.70203 * 54.53812 * 5 3 2 37 37 H 1.07999 * 119.99844 * 353.30687 * 9 7 6 38 38 H 1.09002 * 109.46879 * 83.67688 * 11 10 9 39 39 H 1.08996 * 109.46815 * 203.67189 * 11 10 9 40 40 H 1.08999 * 109.47295 * 323.68054 * 11 10 9 41 41 H 1.08994 * 109.47560 * 0.02562 * 12 10 9 42 42 H 1.09008 * 109.47185 * 120.00183 * 12 10 9 43 43 H 1.09006 * 109.47193 * 239.99884 * 12 10 9 44 44 H 1.09003 * 109.58647 * 293.82207 * 13 6 5 45 45 H 1.09003 * 109.58706 * 173.39522 * 13 6 5 46 46 H 1.09004 * 109.49790 * 65.31854 * 14 13 6 47 47 H 1.09001 * 109.49573 * 185.38292 * 14 13 6 48 48 H 1.00900 * 111.00165 * 321.04740 * 17 15 14 49 49 H 1.08996 * 109.47062 * 300.00178 * 18 17 15 50 50 H 1.08997 * 109.46985 * 60.00065 * 18 17 15 51 51 H 0.97001 * 119.99357 * 359.97438 * 21 19 18 52 52 H 0.96998 * 120.00209 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6066 1.9816 0.8423 5 6 1.6352 2.1279 -1.3087 6 7 2.3303 1.4687 -2.4226 7 6 1.6400 0.9942 -3.4784 8 8 0.4242 1.0188 -3.4707 9 6 2.3572 0.4464 -4.6401 10 6 1.6806 -0.1423 -5.6222 11 6 0.2052 -0.4073 -5.4674 12 6 2.3895 -0.5442 -6.8899 13 6 3.7924 1.3361 -2.3635 14 6 4.1731 0.6595 -1.0429 15 6 3.5662 1.4446 0.1222 16 1 3.9309 2.4715 0.0973 17 7 3.9575 0.8172 1.3916 18 6 5.2727 1.2998 1.8339 19 6 5.6392 0.6362 3.1362 20 8 4.8794 -0.1600 3.6462 21 7 6.8108 0.9281 3.7350 22 6 7.1445 0.3240 4.9196 23 1 6.4684 -0.3855 5.3732 24 6 8.3527 0.6247 5.5366 25 7 9.1756 1.4877 4.9845 26 14 8.8077 -0.1990 7.1503 27 1 8.8597 -1.6705 6.9577 28 1 10.1368 0.2894 7.5979 29 1 7.7881 0.1299 8.1787 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8932 -0.5139 0.8900 35 1 1.9179 3.1800 -1.2729 36 1 0.5576 2.0438 -1.4495 37 1 3.4331 0.5222 -4.6954 38 1 -0.3547 0.4895 -5.7325 39 1 -0.0877 -1.2260 -6.1247 40 1 -0.0089 -0.6770 -4.4333 41 1 3.4432 -0.2746 -6.8182 42 1 2.2993 -1.6213 -7.0308 43 1 1.9389 -0.0279 -7.7376 44 1 4.2512 2.3237 -2.4136 45 1 4.1382 0.7274 -3.1990 46 1 3.7897 -0.3608 -1.0331 47 1 5.2584 0.6413 -0.9432 48 1 3.9483 -0.1889 1.3157 49 1 6.0210 1.0580 1.0792 50 1 5.2347 2.3799 1.9750 51 1 7.4182 1.5652 3.3274 52 1 10.0188 1.6978 5.4153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483610272.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:28 Heat of formation + Delta-G solvation = -82.014197 kcal Electronic energy + Delta-G solvation = -29955.454088 eV Core-core repulsion = 25953.965567 eV Total energy + Delta-G solvation = -4001.488521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.57259 -40.20567 -39.36507 -36.56249 -36.11519 -35.72413 -34.94752 -33.25998 -31.94887 -30.73464 -29.08666 -28.63561 -27.99088 -26.24791 -25.03986 -24.40083 -23.31717 -21.88990 -21.10267 -19.93059 -19.61269 -18.93755 -18.42713 -17.63748 -16.92911 -16.64562 -16.44750 -16.29458 -16.11858 -15.71346 -15.58763 -15.41501 -15.14215 -14.89932 -14.71246 -14.50519 -14.21324 -14.05044 -13.64151 -13.52793 -13.45918 -13.31976 -13.20610 -13.11433 -13.06715 -12.85948 -12.72093 -12.66492 -12.43672 -12.41904 -12.29265 -12.13655 -12.09018 -11.56768 -11.49681 -11.47578 -11.16154 -10.49661 -10.31596 -10.09828 -10.00469 -9.48885 -9.20319 -8.45898 -5.94305 0.44551 1.39926 1.41901 1.52528 2.07232 2.11376 2.29317 2.34460 2.93882 3.21562 3.53004 3.59255 3.72358 3.88960 3.93347 4.02319 4.08165 4.14988 4.23973 4.33328 4.40175 4.46278 4.50644 4.57384 4.59007 4.61809 4.68452 4.70939 4.72398 4.74942 4.77175 4.85285 4.92135 4.94883 4.98698 5.04230 5.09469 5.20548 5.22656 5.27450 5.37905 5.41476 5.45565 5.56914 5.59639 5.73541 5.93175 6.16380 6.42360 6.52969 6.61725 7.13852 7.28128 7.58031 8.13846 8.71142 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.022070 B = 0.002084 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1268.403242 B =13432.528546 C =14023.543408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.107 4.107 3 C -0.081 4.081 4 H 0.080 0.920 5 C 0.118 3.882 6 N -0.604 5.604 7 C 0.538 3.462 8 O -0.577 6.577 9 C -0.252 4.252 10 C -0.031 4.031 11 C -0.121 4.121 12 C -0.124 4.124 13 C 0.113 3.887 14 C -0.164 4.164 15 C 0.096 3.904 16 H 0.090 0.910 17 N -0.675 5.675 18 C 0.067 3.933 19 C 0.437 3.563 20 O -0.625 6.625 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.052 0.948 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.151 0.849 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.062 0.938 47 H 0.084 0.916 48 H 0.342 0.658 49 H 0.070 0.930 50 H 0.104 0.896 51 H 0.397 0.603 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.804 1.236 -24.956 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.145 4.145 3 C -0.101 4.101 4 H 0.098 0.902 5 C -0.005 4.005 6 N -0.336 5.336 7 C 0.332 3.668 8 O -0.460 6.460 9 C -0.272 4.272 10 C -0.032 4.032 11 C -0.177 4.177 12 C -0.181 4.181 13 C -0.009 4.009 14 C -0.203 4.203 15 C -0.014 4.014 16 H 0.108 0.892 17 N -0.306 5.306 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.512 6.512 21 N -0.211 5.211 22 C -0.463 4.463 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.199 1.199 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.169 0.831 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.103 0.897 43 H 0.106 0.894 44 H 0.106 0.894 45 H 0.123 0.877 46 H 0.081 0.919 47 H 0.102 0.898 48 H 0.161 0.839 49 H 0.088 0.912 50 H 0.122 0.878 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.068 1.260 -24.126 26.573 hybrid contribution 1.161 -0.530 0.533 1.384 sum -9.907 0.729 -23.593 25.598 Atomic orbital electron populations 1.21754 0.95920 1.01245 1.01503 1.21393 0.95780 0.96539 1.00765 1.21445 0.94898 0.96656 0.97129 0.90169 1.21648 0.98368 0.95993 0.84503 1.48011 1.08195 1.58075 1.19315 1.19011 0.86852 0.77603 0.83372 1.90726 1.15124 1.58174 1.81926 1.22627 1.01159 1.08055 0.95359 1.22866 0.96203 0.89586 0.94590 1.21023 0.92460 1.01754 1.02512 1.21069 1.00634 1.02957 0.93391 1.21871 0.78673 1.02307 0.98076 1.22672 1.01775 1.00264 0.95627 1.21635 0.94742 0.98785 0.86195 0.89161 1.60162 1.27447 1.12278 1.30707 1.21554 0.91580 1.00526 0.92859 1.20971 0.82125 0.85603 0.88876 1.90498 1.52228 1.40060 1.68389 1.41923 1.17635 1.40181 1.21313 1.19605 1.03474 1.23439 0.99829 0.90496 1.26014 0.95234 0.97329 1.02690 1.69655 1.11116 1.33995 1.41234 0.85014 0.77634 0.78395 0.77446 1.19714 1.19440 1.19893 0.92756 0.93380 0.92773 0.92866 0.92876 0.90255 0.89892 0.83118 0.91356 0.90914 0.91978 0.90185 0.89653 0.89351 0.89442 0.87681 0.91885 0.89770 0.83877 0.91246 0.87842 0.76921 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.68 71.98 0.70 -2.80 16 2 C -0.11 -2.60 4.67 30.59 0.14 -2.46 16 3 C -0.08 -1.78 2.38 -10.70 -0.03 -1.80 16 4 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 5 C 0.12 2.33 5.70 86.36 0.49 2.82 16 6 N -0.60 -11.10 2.33 -823.19 -1.92 -13.02 16 7 C 0.54 11.59 7.47 86.57 0.65 12.23 16 8 O -0.58 -15.99 12.74 -4.06 -0.05 -16.05 16 9 C -0.25 -3.94 8.82 23.43 0.21 -3.73 16 10 C -0.03 -0.44 6.10 -17.62 -0.11 -0.54 16 11 C -0.12 -2.08 8.45 71.24 0.60 -1.48 16 12 C -0.12 -0.93 10.09 71.24 0.72 -0.21 16 13 C 0.11 1.52 6.30 86.36 0.54 2.06 16 14 C -0.16 -2.81 4.99 30.67 0.15 -2.66 16 15 C 0.10 2.05 2.13 44.96 0.10 2.15 16 16 H 0.09 1.75 7.80 -2.39 -0.02 1.73 16 17 N -0.67 -20.23 5.42 -495.32 -2.69 -22.92 16 18 C 0.07 2.17 5.96 85.55 0.51 2.68 16 19 C 0.44 20.46 7.82 87.65 0.69 21.14 16 20 O -0.63 -34.63 15.78 -3.09 -0.05 -34.68 16 21 N -0.57 -29.06 5.29 -306.99 -1.62 -30.68 16 22 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 25 N -0.92 -49.15 13.05 21.66 0.28 -48.86 16 26 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 27 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 29 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 30 H 0.05 1.35 6.46 -2.39 -0.02 1.34 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.05 1.31 6.12 -2.39 -0.01 1.30 16 34 H 0.05 1.49 7.01 -2.39 -0.02 1.48 16 35 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 36 H 0.08 1.92 5.20 -2.39 -0.01 1.91 16 37 H 0.15 1.53 5.93 -2.91 -0.02 1.51 16 38 H 0.07 1.30 7.98 -2.39 -0.02 1.28 16 39 H 0.07 0.92 8.09 -2.39 -0.02 0.90 16 40 H 0.06 1.41 6.27 -2.39 -0.01 1.39 16 41 H 0.08 0.43 7.82 -2.39 -0.02 0.41 16 42 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 43 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 44 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 45 H 0.11 1.03 5.46 -2.39 -0.01 1.01 16 46 H 0.06 1.25 6.45 -2.38 -0.02 1.24 16 47 H 0.08 1.35 7.43 -2.39 -0.02 1.33 16 48 H 0.34 11.19 7.34 -89.69 -0.66 10.53 16 49 H 0.07 1.90 7.41 -2.39 -0.02 1.88 16 50 H 0.10 3.02 8.05 -2.39 -0.02 3.00 16 51 H 0.40 18.95 7.90 -92.71 -0.73 18.22 16 52 H 0.28 13.93 8.31 -92.71 -0.77 13.16 16 Total: -1.00 -70.95 402.43 2.18 -68.77 By element: Atomic # 1 Polarization: 43.91 SS G_CDS: -0.45 Total: 43.46 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 6.64 Total: 9.08 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -5.95 Total: -115.48 kcal Atomic # 8 Polarization: -50.62 SS G_CDS: -0.10 Total: -50.73 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -70.95 2.18 -68.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483610272.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.243 kcal (2) G-P(sol) polarization free energy of solvation -70.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds