Wall clock time and date at job start Tue Mar 31 2020 20:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47648 * 2 1 4 4 H 1.08997 * 109.49328 * 305.06442 * 3 2 1 5 5 C 1.53191 * 109.52182 * 65.14018 * 3 2 1 6 6 N 1.46931 * 108.77703 * 65.33820 * 5 3 2 7 7 C 1.34766 * 120.63288 * 233.63188 * 6 5 3 8 8 O 1.21617 * 120.00025 * 354.85227 * 7 6 5 9 9 C 1.47107 * 120.00090 * 174.85449 * 7 6 5 10 10 C 1.32993 * 119.99875 * 185.47404 * 9 7 6 11 11 C 1.50705 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99652 * 179.97438 * 10 9 7 13 13 C 1.46931 * 118.73374 * 53.60613 * 6 5 3 14 14 C 1.53194 * 108.76577 * 306.38046 * 13 6 5 15 15 C 1.53031 * 109.50237 * 184.99877 * 3 2 1 16 16 H 1.08994 * 109.46160 * 181.37201 * 15 3 2 17 17 N 1.46899 * 109.46100 * 61.39931 * 15 3 2 18 18 C 1.46906 * 111.00192 * 154.96963 * 17 15 3 19 19 C 1.50702 * 109.47257 * 180.02562 * 18 17 15 20 20 O 1.21295 * 119.99734 * 0.02562 * 19 18 17 21 21 N 1.34767 * 119.99804 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00029 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99874 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00521 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00255 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99555 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46855 * 90.00168 * 26 24 22 28 28 H 1.48507 * 109.46918 * 209.99501 * 26 24 22 29 29 H 1.48499 * 109.47408 * 329.99691 * 26 24 22 30 30 H 1.08997 * 109.46857 * 59.99988 * 1 2 3 31 31 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47166 * 300.00520 * 1 2 3 33 33 H 1.09001 * 109.47590 * 239.99732 * 2 1 3 34 34 H 1.09005 * 109.47384 * 119.99637 * 2 1 3 35 35 H 1.08997 * 109.58539 * 185.12372 * 5 3 2 36 36 H 1.09002 * 109.59015 * 305.55057 * 5 3 2 37 37 H 1.07992 * 120.00026 * 5.47182 * 9 7 6 38 38 H 1.08995 * 109.46979 * 60.00585 * 11 10 9 39 39 H 1.08997 * 109.46562 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47214 * 300.00307 * 11 10 9 41 41 H 1.09001 * 109.46794 * 90.00336 * 12 10 9 42 42 H 1.08999 * 109.47077 * 209.99308 * 12 10 9 43 43 H 1.08996 * 109.47528 * 329.99796 * 12 10 9 44 44 H 1.08994 * 109.58596 * 66.18043 * 13 6 5 45 45 H 1.09000 * 109.58020 * 186.46777 * 13 6 5 46 46 H 1.08993 * 109.51427 * 294.70223 * 14 13 6 47 47 H 1.09001 * 109.48902 * 174.60031 * 14 13 6 48 48 H 1.00899 * 111.00379 * 278.92745 * 17 15 3 49 49 H 1.08993 * 109.47048 * 300.00776 * 18 17 15 50 50 H 1.09004 * 109.46695 * 60.00168 * 18 17 15 51 51 H 0.96997 * 120.00622 * 359.97438 * 21 19 18 52 52 H 0.97007 * 120.00202 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9822 -0.8410 5 6 1.6385 2.1275 1.3101 6 7 2.3367 1.4679 2.4220 7 6 1.6492 0.9929 3.4793 8 8 0.4522 1.1903 3.5647 9 6 2.3466 0.2358 4.5302 10 6 1.6533 -0.3257 5.5165 11 6 0.1534 -0.1859 5.5579 12 6 2.3678 -1.1019 6.5927 13 6 3.7987 1.3355 2.3589 14 6 4.1757 0.6591 1.0371 15 6 3.5652 1.4450 -0.1257 16 1 3.9299 2.4718 -0.1011 17 7 3.9526 0.8184 -1.3966 18 6 5.2667 1.3006 -1.8424 19 6 5.6292 0.6377 -3.1463 20 8 4.8675 -0.1578 -3.6546 21 7 6.7996 0.9288 -3.7476 22 6 7.1297 0.3254 -4.9337 23 1 6.4515 -0.3829 -5.3863 24 6 8.3362 0.6259 -5.5540 25 7 8.6523 0.0479 -6.6910 26 14 9.5088 1.8515 -4.7715 27 1 10.4395 1.1352 -3.8627 28 1 10.2859 2.5402 -5.8332 29 1 8.7334 2.8534 -3.9968 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9212 3.1795 1.2738 36 1 0.5613 2.0411 1.4524 37 1 3.4215 0.1359 4.5008 38 1 -0.2769 -0.6181 4.6545 39 1 -0.2361 -0.7080 6.4319 40 1 -0.1117 0.8696 5.6175 41 1 2.6354 -0.4300 7.4083 42 1 1.7131 -1.8877 6.9694 43 1 3.2716 -1.5492 6.1790 44 1 4.2574 2.3230 2.4082 45 1 4.1469 0.7286 3.1946 46 1 3.7921 -0.3611 1.0278 47 1 5.2607 0.6413 0.9342 48 1 3.9431 -0.1878 -1.3215 49 1 5.2290 2.3808 -1.9824 50 1 6.0171 1.0578 -1.0900 51 1 7.4086 1.5652 -3.3414 52 1 9.4947 0.2573 -7.1239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483610273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:32 Heat of formation + Delta-G solvation = -54.729097 kcal Electronic energy + Delta-G solvation = -30030.975040 eV Core-core repulsion = 26030.669691 eV Total energy + Delta-G solvation = -4000.305350 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.77762 -38.94365 -38.14769 -35.81622 -35.09645 -34.17160 -33.81565 -31.69223 -31.03094 -29.94096 -28.36557 -28.03720 -26.79639 -24.78623 -24.00034 -23.30003 -22.42955 -21.16164 -19.44416 -18.83986 -18.45974 -18.12495 -17.63778 -16.08212 -15.96051 -15.70253 -15.41504 -15.08406 -14.81615 -14.72588 -14.58557 -14.28434 -14.06661 -13.99577 -13.75474 -13.32936 -13.24837 -12.87328 -12.78728 -12.76087 -12.62839 -12.41548 -12.32034 -12.08055 -12.02432 -11.91389 -11.82899 -11.73653 -11.53511 -11.33604 -11.17737 -10.69006 -10.61060 -10.55042 -10.28206 -9.98493 -9.70060 -9.58418 -9.50036 -8.74983 -8.59102 -8.20231 -8.10908 -6.32073 -3.83559 1.09472 2.81611 3.01104 3.04761 3.08475 3.13581 3.73155 4.04752 4.09506 4.23166 4.37395 4.50022 4.65586 4.74279 4.76948 4.83973 4.91727 4.99328 5.06235 5.09539 5.14550 5.19712 5.27086 5.32098 5.39905 5.43937 5.45863 5.49277 5.51117 5.57185 5.58696 5.62595 5.73327 5.77666 5.82435 5.86663 5.89990 5.93839 6.09705 6.13229 6.17986 6.21361 6.26648 6.39519 6.47615 7.11519 7.24475 7.56163 7.57999 8.04218 8.13664 8.58777 8.94131 9.41444 9.81874 10.81056 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002220 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.662883 B =12610.159706 C =13254.201639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.088 4.088 4 H 0.091 0.909 5 C 0.114 3.886 6 N -0.605 5.605 7 C 0.549 3.451 8 O -0.544 6.544 9 C -0.241 4.241 10 C -0.032 4.032 11 C -0.117 4.117 12 C -0.128 4.128 13 C 0.111 3.889 14 C -0.171 4.171 15 C 0.093 3.907 16 H 0.078 0.922 17 N -0.660 5.660 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.119 0.881 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.269 1.269 30 H 0.054 0.946 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.097 0.903 37 H 0.127 0.873 38 H 0.080 0.920 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.075 0.925 47 H 0.075 0.925 48 H 0.351 0.649 49 H 0.086 0.914 50 H 0.044 0.956 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 3.375 27.031 29.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.153 4.153 3 C -0.108 4.108 4 H 0.109 0.891 5 C -0.009 4.009 6 N -0.338 5.338 7 C 0.341 3.659 8 O -0.424 6.424 9 C -0.262 4.262 10 C -0.034 4.034 11 C -0.173 4.173 12 C -0.184 4.184 13 C -0.012 4.012 14 C -0.211 4.211 15 C -0.017 4.017 16 H 0.096 0.904 17 N -0.291 5.291 18 C -0.085 4.085 19 C 0.235 3.765 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.707 3.293 27 H -0.197 1.197 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.082 0.918 36 H 0.115 0.885 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.087 0.913 45 H 0.104 0.896 46 H 0.094 0.906 47 H 0.093 0.907 48 H 0.172 0.828 49 H 0.105 0.895 50 H 0.061 0.939 51 H 0.203 0.797 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -11.672 3.355 26.109 28.795 hybrid contribution 2.076 0.535 0.933 2.338 sum -9.595 3.890 27.042 28.956 Atomic orbital electron populations 1.21810 0.96087 1.01385 1.01715 1.21509 0.95708 0.96043 1.02043 1.21529 0.94900 0.97468 0.96880 0.89095 1.21753 0.98924 0.95385 0.84815 1.47934 1.07334 1.58531 1.19980 1.18495 0.86652 0.78912 0.81863 1.90756 1.14889 1.59137 1.77616 1.22477 1.00264 1.05672 0.97775 1.22602 0.96846 0.91118 0.92845 1.21050 0.90831 1.03535 1.01867 1.21031 1.00480 0.99708 0.97209 1.21741 0.79994 1.01086 0.98413 1.22772 1.01494 1.01183 0.95664 1.21573 0.94879 0.98215 0.87064 0.90398 1.60181 1.28105 1.12781 1.28079 1.21745 0.90475 1.00502 0.95788 1.19729 0.83006 0.86451 0.87289 1.90571 1.50330 1.37302 1.66386 1.42210 1.17679 1.40630 1.22545 1.19430 1.04304 1.22945 0.96654 0.86302 1.25046 0.97289 0.97897 0.96002 1.69622 1.23846 1.42499 1.16165 0.86667 0.81638 0.81394 0.79649 1.19694 1.20175 1.19487 0.92732 0.93243 0.92524 0.90850 0.92553 0.91766 0.88467 0.85519 0.90107 0.93028 0.89696 0.90310 0.90921 0.91102 0.91287 0.89570 0.90635 0.90693 0.82822 0.89548 0.93853 0.79731 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 9.68 37.16 0.36 -1.32 16 2 C -0.12 -1.31 4.67 -26.73 -0.12 -1.43 16 3 C -0.09 -0.93 2.37 -90.50 -0.21 -1.14 16 4 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 5 C 0.11 1.12 5.68 -3.71 -0.02 1.10 16 6 N -0.60 -5.76 2.33 -174.16 -0.41 -6.16 16 7 C 0.55 5.95 7.59 -12.67 -0.10 5.85 16 8 O -0.54 -7.26 12.54 5.26 0.07 -7.19 16 9 C -0.24 -2.05 8.95 -37.80 -0.34 -2.39 16 10 C -0.03 -0.25 6.11 -101.16 -0.62 -0.87 16 11 C -0.12 -0.99 8.33 36.01 0.30 -0.69 16 12 C -0.13 -0.64 9.98 36.01 0.36 -0.28 16 13 C 0.11 0.84 6.35 -3.71 -0.02 0.82 16 14 C -0.17 -1.52 4.99 -26.61 -0.13 -1.66 16 15 C 0.09 1.00 2.13 -67.67 -0.14 0.86 16 16 H 0.08 0.80 7.80 -51.93 -0.40 0.39 16 17 N -0.66 -9.56 5.42 -107.95 -0.59 -10.14 16 18 C 0.05 0.75 5.97 -4.97 -0.03 0.72 16 19 C 0.45 9.99 7.82 -10.99 -0.09 9.91 16 20 O -0.56 -14.98 15.78 5.54 0.09 -14.90 16 21 N -0.59 -13.88 5.09 -10.96 -0.06 -13.94 16 22 C -0.30 -8.57 10.16 -14.93 -0.15 -8.72 16 23 H 0.12 3.84 7.39 -52.48 -0.39 3.45 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 25 N -0.88 -25.67 13.96 55.50 0.77 -24.89 16 26 Si 0.88 19.17 27.74 -169.99 -4.71 14.45 16 27 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 33 H 0.07 0.95 7.00 -51.93 -0.36 0.59 16 34 H 0.06 0.65 6.13 -51.93 -0.32 0.33 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.10 1.08 5.24 -51.93 -0.27 0.81 16 37 H 0.13 0.82 5.87 -52.49 -0.31 0.51 16 38 H 0.08 0.81 7.38 -51.93 -0.38 0.43 16 39 H 0.05 0.34 7.94 -51.93 -0.41 -0.08 16 40 H 0.08 0.84 7.08 -51.93 -0.37 0.48 16 41 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.07 0.31 8.05 -51.93 -0.42 -0.11 16 43 H 0.07 0.31 8.07 -51.93 -0.42 -0.11 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.52 5.30 -51.93 -0.28 0.25 16 46 H 0.08 0.74 6.45 -51.93 -0.33 0.40 16 47 H 0.07 0.64 7.42 -51.93 -0.39 0.26 16 48 H 0.35 5.42 7.33 -39.29 -0.29 5.13 16 49 H 0.09 1.23 8.05 -51.93 -0.42 0.81 16 50 H 0.04 0.58 7.41 -51.93 -0.38 0.20 16 51 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 52 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 399.17 15.07 6.02 6.02 Total: -1.00 -33.29 399.17 -8.29 -41.59 By element: Atomic # 1 Polarization: 21.82 SS G_CDS: -8.42 Total: 13.40 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -1.06 Total: 1.77 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: -0.27 Total: -55.13 kcal Atomic # 8 Polarization: -22.24 SS G_CDS: 0.15 Total: -22.09 kcal Atomic # 14 Polarization: 19.17 SS G_CDS: -4.71 Total: 14.45 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.29 -8.29 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483610273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.144 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds