Wall clock time and date at job start Tue Mar 31 2020 20:11:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47648 * 2 1 4 4 H 1.08997 * 109.49328 * 305.06442 * 3 2 1 5 5 C 1.53191 * 109.52182 * 65.14018 * 3 2 1 6 6 N 1.46931 * 108.77703 * 65.33820 * 5 3 2 7 7 C 1.34766 * 120.63288 * 233.63188 * 6 5 3 8 8 O 1.21617 * 120.00025 * 354.85227 * 7 6 5 9 9 C 1.47107 * 120.00090 * 174.85449 * 7 6 5 10 10 C 1.32993 * 119.99875 * 185.47404 * 9 7 6 11 11 C 1.50705 * 120.00201 * 359.97438 * 10 9 7 12 12 C 1.50703 * 119.99652 * 179.97438 * 10 9 7 13 13 C 1.46931 * 118.73374 * 53.60613 * 6 5 3 14 14 C 1.53194 * 108.76577 * 306.38046 * 13 6 5 15 15 C 1.53031 * 109.50237 * 184.99877 * 3 2 1 16 16 H 1.08994 * 109.46160 * 181.37201 * 15 3 2 17 17 N 1.46899 * 109.46100 * 61.39931 * 15 3 2 18 18 C 1.46906 * 111.00192 * 154.96963 * 17 15 3 19 19 C 1.50702 * 109.47257 * 180.02562 * 18 17 15 20 20 O 1.21295 * 119.99734 * 0.02562 * 19 18 17 21 21 N 1.34767 * 119.99804 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00029 * 179.97438 * 21 19 18 23 23 H 1.08007 * 119.99874 * 0.02562 * 22 21 19 24 24 C 1.38948 * 120.00521 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00255 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99555 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.46855 * 90.00168 * 26 24 22 28 28 H 1.48507 * 109.46918 * 209.99501 * 26 24 22 29 29 H 1.48499 * 109.47408 * 329.99691 * 26 24 22 30 30 H 1.08997 * 109.46857 * 59.99988 * 1 2 3 31 31 H 1.08996 * 109.47232 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47166 * 300.00520 * 1 2 3 33 33 H 1.09001 * 109.47590 * 239.99732 * 2 1 3 34 34 H 1.09005 * 109.47384 * 119.99637 * 2 1 3 35 35 H 1.08997 * 109.58539 * 185.12372 * 5 3 2 36 36 H 1.09002 * 109.59015 * 305.55057 * 5 3 2 37 37 H 1.07992 * 120.00026 * 5.47182 * 9 7 6 38 38 H 1.08995 * 109.46979 * 60.00585 * 11 10 9 39 39 H 1.08997 * 109.46562 * 180.02562 * 11 10 9 40 40 H 1.08993 * 109.47214 * 300.00307 * 11 10 9 41 41 H 1.09001 * 109.46794 * 90.00336 * 12 10 9 42 42 H 1.08999 * 109.47077 * 209.99308 * 12 10 9 43 43 H 1.08996 * 109.47528 * 329.99796 * 12 10 9 44 44 H 1.08994 * 109.58596 * 66.18043 * 13 6 5 45 45 H 1.09000 * 109.58020 * 186.46777 * 13 6 5 46 46 H 1.08993 * 109.51427 * 294.70223 * 14 13 6 47 47 H 1.09001 * 109.48902 * 174.60031 * 14 13 6 48 48 H 1.00899 * 111.00379 * 278.92745 * 17 15 3 49 49 H 1.08993 * 109.47048 * 300.00776 * 18 17 15 50 50 H 1.09004 * 109.46695 * 60.00168 * 18 17 15 51 51 H 0.96997 * 120.00622 * 359.97438 * 21 19 18 52 52 H 0.97007 * 120.00202 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6049 1.9822 -0.8410 5 6 1.6385 2.1275 1.3101 6 7 2.3367 1.4679 2.4220 7 6 1.6492 0.9929 3.4793 8 8 0.4522 1.1903 3.5647 9 6 2.3466 0.2358 4.5302 10 6 1.6533 -0.3257 5.5165 11 6 0.1534 -0.1859 5.5579 12 6 2.3678 -1.1019 6.5927 13 6 3.7987 1.3355 2.3589 14 6 4.1757 0.6591 1.0371 15 6 3.5652 1.4450 -0.1257 16 1 3.9299 2.4718 -0.1011 17 7 3.9526 0.8184 -1.3966 18 6 5.2667 1.3006 -1.8424 19 6 5.6292 0.6377 -3.1463 20 8 4.8675 -0.1578 -3.6546 21 7 6.7996 0.9288 -3.7476 22 6 7.1297 0.3254 -4.9337 23 1 6.4515 -0.3829 -5.3863 24 6 8.3362 0.6259 -5.5540 25 7 8.6523 0.0479 -6.6910 26 14 9.5088 1.8515 -4.7715 27 1 10.4395 1.1352 -3.8627 28 1 10.2859 2.5402 -5.8332 29 1 8.7334 2.8534 -3.9968 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9212 3.1795 1.2738 36 1 0.5613 2.0411 1.4524 37 1 3.4215 0.1359 4.5008 38 1 -0.2769 -0.6181 4.6545 39 1 -0.2361 -0.7080 6.4319 40 1 -0.1117 0.8696 5.6175 41 1 2.6354 -0.4300 7.4083 42 1 1.7131 -1.8877 6.9694 43 1 3.2716 -1.5492 6.1790 44 1 4.2574 2.3230 2.4082 45 1 4.1469 0.7286 3.1946 46 1 3.7921 -0.3611 1.0278 47 1 5.2607 0.6413 0.9342 48 1 3.9431 -0.1878 -1.3215 49 1 5.2290 2.3808 -1.9824 50 1 6.0171 1.0578 -1.0900 51 1 7.4086 1.5652 -3.3414 52 1 9.4947 0.2573 -7.1239 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483610273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:31 Heat of formation + Delta-G solvation = -77.934868 kcal Electronic energy + Delta-G solvation = -30031.981318 eV Core-core repulsion = 26030.669691 eV Total energy + Delta-G solvation = -4001.311628 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57049 -40.32301 -39.40150 -36.57798 -36.13667 -35.75299 -34.95695 -33.73305 -31.97418 -30.75850 -29.13687 -28.63266 -28.08425 -26.13448 -24.99733 -24.35728 -23.31223 -21.89534 -21.28507 -20.32310 -19.57032 -18.96118 -18.43105 -17.61355 -17.03006 -16.71932 -16.43586 -16.37085 -16.05848 -15.63068 -15.54889 -15.35465 -15.01062 -14.91020 -14.74652 -14.49704 -14.41147 -14.23338 -13.92504 -13.65433 -13.49162 -13.37479 -13.21864 -13.16096 -13.07034 -12.87731 -12.73294 -12.64606 -12.43143 -12.40260 -12.30860 -12.08742 -11.97168 -11.55804 -11.49893 -11.48630 -11.15376 -10.48739 -10.40124 -10.23666 -10.13949 -9.48182 -9.20262 -8.40111 -6.01148 0.45427 1.31297 1.36836 1.46049 1.98319 2.10709 2.24371 2.35034 2.75045 3.16582 3.41766 3.59102 3.71598 3.88069 3.92065 4.01922 4.08397 4.12562 4.20829 4.23502 4.37683 4.45066 4.49995 4.57606 4.58855 4.59892 4.67999 4.70896 4.72298 4.74495 4.77544 4.87279 4.91757 4.95350 4.99184 5.05060 5.09691 5.20158 5.22204 5.28395 5.37881 5.43872 5.54415 5.55941 5.58352 5.73309 5.93402 6.12704 6.41403 6.52812 6.61457 6.89860 7.27932 7.41707 7.99092 8.77619 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020000 B = 0.002220 C = 0.002112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.662883 B =12610.159706 C =13254.201639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 C -0.082 4.082 4 H 0.080 0.920 5 C 0.119 3.881 6 N -0.604 5.604 7 C 0.538 3.462 8 O -0.580 6.580 9 C -0.252 4.252 10 C -0.031 4.031 11 C -0.115 4.115 12 C -0.125 4.125 13 C 0.112 3.888 14 C -0.164 4.164 15 C 0.097 3.903 16 H 0.094 0.906 17 N -0.679 5.679 18 C 0.063 3.937 19 C 0.448 3.552 20 O -0.616 6.616 21 N -0.591 5.591 22 C -0.328 4.328 23 H 0.053 0.947 24 C -0.018 4.018 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.256 1.256 28 H -0.277 1.277 29 H -0.229 1.229 30 H 0.053 0.947 31 H 0.048 0.952 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.055 0.945 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.059 0.941 39 H 0.071 0.929 40 H 0.067 0.933 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.088 0.912 48 H 0.343 0.657 49 H 0.113 0.887 50 H 0.081 0.919 51 H 0.390 0.610 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.106 5.544 30.699 32.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.146 4.146 3 C -0.102 4.102 4 H 0.098 0.902 5 C -0.004 4.004 6 N -0.336 5.336 7 C 0.332 3.668 8 O -0.463 6.463 9 C -0.273 4.273 10 C -0.033 4.033 11 C -0.171 4.171 12 C -0.181 4.181 13 C -0.011 4.011 14 C -0.204 4.204 15 C -0.013 4.013 16 H 0.113 0.887 17 N -0.310 5.310 18 C -0.069 4.069 19 C 0.236 3.764 20 O -0.501 6.501 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.071 0.929 24 C -0.217 4.217 25 N -0.577 5.577 26 Si 0.787 3.213 27 H -0.180 1.180 28 H -0.202 1.202 29 H -0.153 1.153 30 H 0.072 0.928 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.169 0.831 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.124 0.876 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.162 0.838 49 H 0.131 0.869 50 H 0.099 0.901 51 H 0.226 0.774 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -9.437 5.541 29.805 31.751 hybrid contribution 1.215 -0.251 -0.257 1.267 sum -8.221 5.290 29.548 31.123 Atomic orbital electron populations 1.21755 0.96095 1.01245 1.01407 1.21415 0.95639 0.96654 1.00920 1.21446 0.95192 0.96555 0.96995 0.90162 1.21636 0.98182 0.96089 0.84511 1.48012 1.08290 1.57928 1.19355 1.18999 0.86445 0.78835 0.82566 1.90744 1.16483 1.60514 1.78514 1.22602 1.01374 1.05954 0.97346 1.22880 0.96310 0.90727 0.93365 1.20971 0.91981 1.02445 1.01701 1.21079 1.00694 0.99770 0.96547 1.21916 0.78538 1.02392 0.98246 1.22688 1.02012 1.00267 0.95443 1.21624 0.94591 0.98977 0.86106 0.88745 1.60149 1.27744 1.12449 1.30699 1.21667 0.91966 1.00928 0.92323 1.21088 0.81555 0.85036 0.88759 1.90553 1.51766 1.39481 1.68263 1.42029 1.18784 1.41138 1.21356 1.18992 1.04254 1.23460 0.99020 0.92899 1.26161 0.99060 1.00183 0.96246 1.69813 1.24912 1.44614 1.18324 0.85339 0.78461 0.78557 0.78978 1.17999 1.20248 1.15256 0.92783 0.93330 0.92982 0.92814 0.92653 0.90301 0.90147 0.83084 0.92235 0.91057 0.91488 0.88966 0.90148 0.90023 0.89401 0.87623 0.91829 0.89326 0.83801 0.86889 0.90117 0.77420 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.68 71.98 0.70 -2.67 16 2 C -0.11 -2.48 4.67 30.59 0.14 -2.34 16 3 C -0.08 -1.65 2.37 -10.72 -0.03 -1.67 16 4 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 5 C 0.12 2.20 5.68 86.36 0.49 2.69 16 6 N -0.60 -10.31 2.33 -823.17 -1.92 -12.23 16 7 C 0.54 11.12 7.59 86.57 0.66 11.78 16 8 O -0.58 -15.72 12.54 -4.08 -0.05 -15.78 16 9 C -0.25 -3.76 8.95 23.43 0.21 -3.55 16 10 C -0.03 -0.43 6.11 -17.61 -0.11 -0.53 16 11 C -0.11 -1.92 8.33 71.24 0.59 -1.33 16 12 C -0.12 -0.87 9.98 71.24 0.71 -0.16 16 13 C 0.11 1.27 6.35 86.36 0.55 1.82 16 14 C -0.16 -2.38 4.99 30.67 0.15 -2.22 16 15 C 0.10 1.81 2.13 44.94 0.10 1.90 16 16 H 0.09 1.51 7.80 -2.39 -0.02 1.49 16 17 N -0.68 -18.52 5.42 -495.44 -2.69 -21.21 16 18 C 0.06 1.78 5.97 85.56 0.51 2.29 16 19 C 0.45 19.67 7.82 87.66 0.69 20.35 16 20 O -0.62 -33.93 15.78 -3.08 -0.05 -33.98 16 21 N -0.59 -27.27 5.09 -306.99 -1.56 -28.83 16 22 C -0.33 -19.11 10.16 84.04 0.85 -18.25 16 23 H 0.05 3.70 7.39 -2.91 -0.02 3.68 16 24 C -0.02 -1.00 5.50 84.93 0.47 -0.54 16 25 N -0.94 -56.38 13.96 21.66 0.30 -56.07 16 26 Si 0.97 38.06 27.74 68.60 1.90 39.96 16 27 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 28 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 29 H -0.23 -7.49 6.52 99.48 0.65 -6.84 16 30 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.05 1.08 8.14 -2.39 -0.02 1.07 16 32 H 0.05 1.24 6.46 -2.39 -0.02 1.22 16 33 H 0.05 1.44 7.00 -2.39 -0.02 1.43 16 34 H 0.05 1.27 6.13 -2.38 -0.01 1.25 16 35 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.08 1.79 5.24 -2.39 -0.01 1.78 16 37 H 0.15 1.40 5.87 -2.91 -0.02 1.39 16 38 H 0.06 1.25 7.38 -2.39 -0.02 1.23 16 39 H 0.07 0.85 7.94 -2.39 -0.02 0.84 16 40 H 0.07 1.37 7.08 -2.39 -0.02 1.35 16 41 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.08 0.46 8.05 -2.39 -0.02 0.44 16 43 H 0.08 0.43 8.07 -2.39 -0.02 0.41 16 44 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 45 H 0.11 0.83 5.30 -2.39 -0.01 0.81 16 46 H 0.06 1.10 6.45 -2.39 -0.02 1.09 16 47 H 0.09 1.10 7.42 -2.39 -0.02 1.08 16 48 H 0.34 10.41 7.33 -89.69 -0.66 9.75 16 49 H 0.11 2.66 8.05 -2.39 -0.02 2.64 16 50 H 0.08 1.74 7.41 -2.38 -0.02 1.72 16 51 H 0.39 14.66 5.76 -92.71 -0.53 14.13 16 52 H 0.28 15.32 8.31 -92.70 -0.77 14.55 16 Total: -1.00 -80.02 399.17 2.31 -77.71 By element: Atomic # 1 Polarization: 43.18 SS G_CDS: -0.31 Total: 42.87 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 6.68 Total: 7.56 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -5.87 Total: -118.34 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.10 Total: -49.76 kcal Atomic # 14 Polarization: 38.06 SS G_CDS: 1.90 Total: 39.96 kcal Total: -80.02 2.31 -77.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483610273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.229 kcal (2) G-P(sol) polarization free energy of solvation -80.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds