Wall clock time and date at job start Tue Mar 31 2020 20:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47131 * 2 1 4 4 H 1.08997 * 109.49892 * 54.93111 * 3 2 1 5 5 C 1.53201 * 109.49572 * 294.83622 * 3 2 1 6 6 N 1.46918 * 108.77288 * 185.41289 * 5 3 2 7 7 C 1.34775 * 120.63233 * 233.58603 * 6 5 3 8 8 O 1.21615 * 119.99720 * 356.32019 * 7 6 5 9 9 C 1.47098 * 120.00278 * 176.32305 * 7 6 5 10 10 C 1.32997 * 120.00312 * 173.15961 * 9 7 6 11 11 C 1.50698 * 119.99804 * 352.76748 * 10 9 7 12 12 C 1.50701 * 120.00121 * 172.76423 * 10 9 7 13 13 C 1.46932 * 118.74059 * 53.61142 * 6 5 3 14 14 C 1.53193 * 108.77449 * 306.39269 * 13 6 5 15 15 C 1.53036 * 109.49535 * 175.00231 * 3 2 1 16 16 H 1.09001 * 109.46500 * 61.30986 * 15 3 2 17 17 N 1.46903 * 109.45997 * 301.33262 * 15 3 2 18 18 C 1.46899 * 110.99666 * 155.00345 * 17 15 3 19 19 C 1.50706 * 109.46565 * 180.02562 * 18 17 15 20 20 O 1.21287 * 120.00375 * 0.02562 * 19 18 17 21 21 N 1.34784 * 119.99669 * 180.02562 * 19 18 17 22 22 C 1.37095 * 119.99663 * 180.02562 * 21 19 18 23 23 H 1.07996 * 120.00437 * 0.02562 * 22 21 19 24 24 C 1.38950 * 119.99626 * 179.97438 * 22 21 19 25 25 N 1.31407 * 120.00169 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 119.99939 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47072 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.47112 * 120.00351 * 26 24 22 29 29 H 1.48502 * 109.47377 * 240.00652 * 26 24 22 30 30 H 1.09000 * 109.47093 * 300.00340 * 1 2 3 31 31 H 1.09003 * 109.47451 * 60.00136 * 1 2 3 32 32 H 1.08994 * 109.47596 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47331 * 240.00078 * 2 1 3 34 34 H 1.08993 * 109.47278 * 119.99928 * 2 1 3 35 35 H 1.08996 * 109.58815 * 305.20433 * 5 3 2 36 36 H 1.09002 * 109.58278 * 65.62748 * 5 3 2 37 37 H 1.07998 * 119.99984 * 353.15379 * 9 7 6 38 38 H 1.09003 * 109.47254 * 84.02137 * 11 10 9 39 39 H 1.08997 * 109.47375 * 204.02828 * 11 10 9 40 40 H 1.08997 * 109.46855 * 324.02648 * 11 10 9 41 41 H 1.09004 * 109.47059 * 0.02562 * 12 10 9 42 42 H 1.09004 * 109.46307 * 119.99873 * 12 10 9 43 43 H 1.08997 * 109.47269 * 239.99692 * 12 10 9 44 44 H 1.09001 * 109.58646 * 186.60314 * 13 6 5 45 45 H 1.09004 * 109.69884 * 66.24523 * 13 6 5 46 46 H 1.09006 * 109.49177 * 294.68031 * 14 13 6 47 47 H 1.08993 * 109.49718 * 174.58721 * 14 13 6 48 48 H 1.00902 * 110.99755 * 278.95814 * 17 15 3 49 49 H 1.09003 * 109.47377 * 299.99866 * 18 17 15 50 50 H 1.08998 * 109.47127 * 60.00434 * 18 17 15 51 51 H 0.97001 * 119.99673 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00131 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6047 1.9823 0.8409 5 6 1.6385 2.1268 -1.3106 6 7 2.2451 3.4643 -1.3508 7 6 1.4858 4.5564 -1.5683 8 8 0.2981 4.4349 -1.8000 9 6 2.0936 5.8953 -1.5254 10 6 1.3786 6.9616 -1.8726 11 6 0.0035 6.7869 -2.4637 12 6 1.9436 8.3446 -1.6749 13 6 3.6953 3.5888 -1.1499 14 6 4.0737 2.8881 0.1588 15 6 3.5652 1.4450 0.1257 16 1 4.0009 0.9263 -0.7283 17 7 3.9552 0.7602 1.3654 18 6 5.3166 0.2181 1.2614 19 6 5.6804 -0.4760 2.5487 20 8 4.8840 -0.5156 3.4625 21 7 6.8911 -1.0527 2.6844 22 6 7.2219 -1.6846 3.8552 23 1 6.5124 -1.7206 4.6686 24 6 8.4697 -2.2796 3.9949 25 7 9.3329 -2.2362 3.0050 26 14 8.9208 -3.1400 5.5904 27 1 7.7835 -3.0485 6.5408 28 1 9.2215 -4.5679 5.3149 29 1 10.1159 -2.4880 6.1837 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8899 35 1 1.9964 1.5377 -2.1549 36 1 0.5532 2.2161 -1.3586 37 1 3.1204 6.0124 -1.2119 38 1 -0.7249 6.6708 -1.6612 39 1 -0.2497 7.6633 -3.0603 40 1 -0.0096 5.9000 -3.0973 41 1 2.9405 8.2711 -1.2400 42 1 2.0040 8.8533 -2.6371 43 1 1.2954 8.9097 -1.0052 44 1 3.9670 4.6428 -1.0920 45 1 4.2228 3.1205 -1.9809 46 1 3.6192 3.4148 0.9980 47 1 5.1577 2.8894 0.2718 48 1 3.8708 1.3758 2.1604 49 1 5.3616 -0.4956 0.4388 50 1 6.0182 1.0313 1.0758 51 1 7.5279 -1.0213 1.9534 52 1 10.2042 -2.6513 3.1027 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483610274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:11:34 Heat of formation + Delta-G solvation = -85.810429 kcal Electronic energy + Delta-G solvation = -29637.593796 eV Core-core repulsion = 25635.940658 eV Total energy + Delta-G solvation = -4001.653137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.45310 -40.21480 -39.32236 -36.57730 -36.13767 -35.79402 -35.26544 -33.26095 -31.98217 -30.60429 -29.08017 -28.64475 -27.96806 -26.22770 -25.23686 -24.42927 -22.40143 -21.74635 -21.25672 -20.60869 -19.86327 -18.96981 -18.44269 -17.68818 -16.83227 -16.80694 -16.47966 -16.20765 -16.08534 -15.65041 -15.49547 -15.15497 -15.00269 -14.93706 -14.82149 -14.43054 -14.34177 -14.06031 -13.71959 -13.66810 -13.51731 -13.37254 -13.18477 -13.12692 -13.03926 -12.88815 -12.71337 -12.55408 -12.48519 -12.39802 -12.33251 -12.11906 -11.93906 -11.62350 -11.51273 -11.46265 -11.28132 -10.55073 -10.31664 -10.14393 -10.00000 -9.55144 -9.17958 -8.46170 -5.94337 0.41722 1.36566 1.42006 1.55826 2.06342 2.07586 2.27952 2.30399 2.92911 3.21476 3.52256 3.55975 3.67227 3.86066 3.96180 4.00574 4.06718 4.18432 4.27964 4.34250 4.42846 4.43909 4.46550 4.53395 4.55775 4.62426 4.67525 4.69567 4.70841 4.74491 4.77732 4.84961 4.91753 4.99282 5.01335 5.03405 5.09192 5.19159 5.22306 5.28248 5.41898 5.44438 5.48497 5.56728 5.61496 5.71533 5.93505 6.16225 6.41692 6.47943 6.61788 7.14251 7.22214 7.58377 8.14126 8.71346 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018454 B = 0.002110 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.925461 B =13264.083988 C =14272.103833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C -0.076 4.076 4 H 0.054 0.946 5 C 0.121 3.879 6 N -0.609 5.609 7 C 0.537 3.463 8 O -0.581 6.581 9 C -0.253 4.253 10 C -0.028 4.028 11 C -0.123 4.123 12 C -0.125 4.125 13 C 0.111 3.889 14 C -0.162 4.162 15 C 0.095 3.905 16 H 0.089 0.911 17 N -0.672 5.672 18 C 0.068 3.932 19 C 0.438 3.562 20 O -0.625 6.625 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.013 4.013 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.043 0.957 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.152 0.848 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.078 0.922 42 H 0.089 0.911 43 H 0.086 0.914 44 H 0.108 0.892 45 H 0.087 0.913 46 H 0.061 0.939 47 H 0.087 0.913 48 H 0.342 0.658 49 H 0.103 0.897 50 H 0.070 0.930 51 H 0.397 0.603 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 18.508 -15.317 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C -0.096 4.096 4 H 0.073 0.927 5 C -0.002 4.002 6 N -0.340 5.340 7 C 0.330 3.670 8 O -0.464 6.464 9 C -0.273 4.273 10 C -0.030 4.030 11 C -0.179 4.179 12 C -0.181 4.181 13 C -0.011 4.011 14 C -0.202 4.202 15 C -0.015 4.015 16 H 0.108 0.892 17 N -0.302 5.302 18 C -0.064 4.064 19 C 0.226 3.774 20 O -0.511 6.511 21 N -0.212 5.212 22 C -0.461 4.461 23 H 0.095 0.905 24 C -0.213 4.213 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.200 1.200 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.062 0.938 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.079 0.921 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.169 0.831 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.097 0.903 42 H 0.108 0.892 43 H 0.105 0.895 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.080 0.920 47 H 0.106 0.894 48 H 0.160 0.840 49 H 0.121 0.879 50 H 0.088 0.912 51 H 0.231 0.769 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -11.703 17.714 -15.012 26.002 hybrid contribution 1.141 -0.060 0.809 1.401 sum -10.562 17.654 -14.203 24.998 Atomic orbital electron populations 1.21797 0.95912 1.01654 1.01364 1.21349 0.95313 0.95297 1.02512 1.21358 0.94828 0.96507 0.96885 0.92744 1.21652 0.99261 0.82096 0.97167 1.48115 1.08987 1.06353 1.70566 1.19077 0.85859 0.86015 0.76014 1.90728 1.17134 1.87435 1.51140 1.22610 1.02256 0.90768 1.11686 1.22890 0.95033 0.96138 0.88955 1.21051 0.93676 1.02330 1.00857 1.21077 1.01848 0.91414 1.03749 1.21920 0.78842 1.03120 0.97225 1.22655 1.02308 0.96621 0.98590 1.21656 0.94991 0.92414 0.92409 0.89242 1.60128 1.23464 1.41377 1.05268 1.21543 0.90938 0.99205 0.94725 1.20963 0.82150 0.83543 0.90786 1.90499 1.51204 1.64980 1.44411 1.41938 1.14204 1.49262 1.15747 1.19669 1.00098 1.32297 0.94062 0.90517 1.26005 0.95122 0.98103 1.02070 1.69667 1.07983 1.45394 1.33006 0.84899 0.78095 0.78025 0.77491 1.19959 1.19686 1.19541 0.93784 0.92343 0.92446 0.91580 0.92075 0.90332 0.90208 0.83085 0.91653 0.90581 0.91666 0.90267 0.89216 0.89532 0.87426 0.89482 0.92030 0.89434 0.83972 0.87916 0.91231 0.76935 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.27 9.67 71.98 0.70 -2.57 16 2 C -0.11 -2.52 5.31 30.60 0.16 -2.35 16 3 C -0.08 -1.69 2.06 -10.71 -0.02 -1.71 16 4 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 5 C 0.12 2.50 5.32 86.37 0.46 2.96 16 6 N -0.61 -11.82 2.97 -823.16 -2.45 -14.27 16 7 C 0.54 12.14 7.48 86.57 0.65 12.78 16 8 O -0.58 -16.89 12.73 -4.08 -0.05 -16.95 16 9 C -0.25 -4.11 8.92 23.43 0.21 -3.91 16 10 C -0.03 -0.41 6.11 -17.62 -0.11 -0.52 16 11 C -0.12 -2.10 8.46 71.24 0.60 -1.49 16 12 C -0.12 -0.95 10.10 71.24 0.72 -0.23 16 13 C 0.11 1.54 6.35 86.36 0.55 2.09 16 14 C -0.16 -2.77 5.33 30.67 0.16 -2.60 16 15 C 0.10 2.04 1.89 44.94 0.08 2.12 16 16 H 0.09 1.76 7.80 -2.39 -0.02 1.74 16 17 N -0.67 -19.86 4.96 -495.43 -2.46 -22.32 16 18 C 0.07 2.18 5.96 85.56 0.51 2.69 16 19 C 0.44 20.35 7.82 87.66 0.69 21.04 16 20 O -0.62 -34.37 15.78 -3.05 -0.05 -34.42 16 21 N -0.57 -28.96 5.29 -306.98 -1.62 -30.59 16 22 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -49.06 13.05 21.66 0.28 -48.78 16 26 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 27 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 28 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.06 1.17 6.70 -2.39 -0.02 1.16 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 34 H 0.06 1.82 7.41 -2.39 -0.02 1.80 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.92 5.75 -2.39 -0.01 1.91 16 37 H 0.15 1.64 5.73 -2.91 -0.02 1.62 16 38 H 0.06 1.29 8.01 -2.39 -0.02 1.27 16 39 H 0.08 0.91 8.09 -2.39 -0.02 0.89 16 40 H 0.06 1.43 6.20 -2.39 -0.01 1.42 16 41 H 0.08 0.46 7.82 -2.39 -0.02 0.44 16 42 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.11 1.06 5.31 -2.39 -0.01 1.05 16 45 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 46 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 47 H 0.09 1.37 7.42 -2.39 -0.02 1.35 16 48 H 0.34 11.03 8.18 -89.69 -0.73 10.30 16 49 H 0.10 2.97 8.06 -2.39 -0.02 2.96 16 50 H 0.07 1.88 7.41 -2.39 -0.02 1.86 16 51 H 0.40 18.87 7.90 -92.71 -0.73 18.14 16 52 H 0.28 13.81 8.31 -92.71 -0.77 13.04 16 Total: -1.00 -71.42 408.16 1.79 -69.63 By element: Atomic # 1 Polarization: 43.25 SS G_CDS: -0.53 Total: 42.71 kcal Atomic # 6 Polarization: 3.49 SS G_CDS: 6.64 Total: 10.13 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -6.25 Total: -115.96 kcal Atomic # 8 Polarization: -51.27 SS G_CDS: -0.10 Total: -51.37 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -71.42 1.79 -69.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483610274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.182 kcal (2) G-P(sol) polarization free energy of solvation -71.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.628 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds