Wall clock time and date at job start Tue Mar 31 2020 20:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31008 * 1 3 3 C 1.50694 * 120.00078 * 2 1 4 4 H 1.09008 * 109.47265 * 0.02562 * 3 2 1 5 5 C 1.52992 * 109.47205 * 239.99847 * 3 2 1 6 6 C 1.52997 * 109.47211 * 65.00478 * 5 3 2 7 7 C 1.53002 * 109.46969 * 119.99724 * 3 2 1 8 8 C 1.50695 * 109.47505 * 295.00052 * 7 3 2 9 9 O 1.21284 * 119.99612 * 0.02562 * 8 7 3 10 10 N 1.34775 * 120.00477 * 179.72162 * 8 7 3 11 11 C 1.47425 * 125.64378 * 354.90998 * 10 8 7 12 12 C 1.54690 * 104.94115 * 204.07149 * 11 10 8 13 13 C 1.55161 * 101.67372 * 323.27708 * 12 11 10 14 14 C 1.47018 * 125.65254 * 175.20865 * 10 8 7 15 15 H 1.09002 * 109.88055 * 59.49027 * 14 10 8 16 16 C 1.53003 * 109.88517 * 298.48327 * 14 10 8 17 17 N 1.46898 * 109.46912 * 175.62297 * 16 14 10 18 18 C 1.46900 * 110.99783 * 184.82254 * 17 16 14 19 19 C 1.50696 * 109.47252 * 179.97438 * 18 17 16 20 20 O 1.21297 * 120.00227 * 0.02562 * 19 18 17 21 21 N 1.34777 * 120.00133 * 180.02562 * 19 18 17 22 22 C 1.37101 * 120.00183 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99442 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00063 * 180.02562 * 22 21 19 25 25 N 1.31410 * 120.00123 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00028 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46921 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47300 * 119.99827 * 26 24 22 29 29 H 1.48499 * 109.46985 * 239.99844 * 26 24 22 30 30 H 1.07999 * 119.99709 * 359.97438 * 1 2 3 31 31 H 1.07998 * 120.00309 * 179.97438 * 1 2 3 32 32 H 1.07999 * 119.99709 * 180.02562 * 2 1 3 33 33 H 1.09007 * 109.47308 * 184.99834 * 5 3 2 34 34 H 1.08997 * 109.47679 * 304.99945 * 5 3 2 35 35 H 1.08995 * 109.47654 * 59.99519 * 6 5 3 36 36 H 1.09001 * 109.47610 * 180.02562 * 6 5 3 37 37 H 1.09007 * 109.46858 * 299.99515 * 6 5 3 38 38 H 1.09005 * 109.47231 * 175.00120 * 7 3 2 39 39 H 1.09003 * 109.47051 * 55.00173 * 7 3 2 40 40 H 1.09001 * 110.36589 * 323.00037 * 11 10 8 41 41 H 1.09003 * 110.37155 * 85.32319 * 11 10 8 42 42 H 1.09001 * 111.10389 * 205.11098 * 12 11 10 43 43 H 1.08999 * 110.85068 * 81.33366 * 12 11 10 44 44 H 1.08999 * 110.71906 * 276.96996 * 13 12 11 45 45 H 1.08999 * 110.72138 * 153.70028 * 13 12 11 46 46 H 1.08996 * 109.46775 * 295.62569 * 16 14 10 47 47 H 1.08999 * 109.47096 * 55.61953 * 16 14 10 48 48 H 1.00899 * 111.00126 * 308.77592 * 17 16 14 49 49 H 1.08995 * 109.47592 * 300.00287 * 18 17 16 50 50 H 1.09005 * 109.46925 * 60.00609 * 18 17 16 51 51 H 0.97004 * 120.00040 * 0.02562 * 21 19 18 52 52 H 0.97001 * 120.00364 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9432 1.3861 -1.2491 6 6 2.0566 1.4308 -2.4952 7 6 2.9431 1.3861 1.2493 8 6 2.0698 1.4300 2.4766 9 8 0.8627 1.3990 2.3633 10 7 2.6302 1.4975 3.7005 11 6 4.0743 1.4287 3.9891 12 6 4.1655 0.9337 5.4519 13 6 2.9509 1.6482 6.1014 14 6 1.9024 1.6457 4.9692 15 1 1.2153 0.8100 5.1022 16 6 1.1251 2.9636 4.9725 17 7 0.3196 3.0539 6.1976 18 6 -0.5283 4.2535 6.1828 19 6 -1.3384 4.3116 7.4521 20 8 -1.2208 3.4399 8.2872 21 7 -2.1938 5.3324 7.6594 22 6 -2.9305 5.3856 8.8145 23 1 -2.8250 4.6097 9.5584 24 6 -3.8127 6.4376 9.0279 25 7 -3.9406 7.3818 8.1230 26 14 -4.8159 6.5105 10.6020 27 1 -4.4898 5.3370 11.4516 28 1 -4.4931 7.7595 11.3374 29 1 -6.2628 6.4925 10.2681 30 1 -0.5399 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 3.5541 2.2878 -1.2055 34 1 3.5907 0.5105 -1.2951 35 1 1.4091 2.3064 -2.4494 36 1 2.6832 1.4880 -3.3853 37 1 1.4456 0.5290 -2.5390 38 1 3.5541 2.2878 1.2057 39 1 3.5906 0.5104 1.2952 40 1 4.5621 0.7219 3.3179 41 1 4.5272 2.4158 3.8962 42 1 5.0994 1.2508 5.9160 43 1 4.0545 -0.1494 5.5025 44 1 3.2100 2.6683 6.3849 45 1 2.5893 1.0874 6.9633 46 1 1.8251 3.7982 4.9354 47 1 0.4692 3.0007 4.1027 48 1 -0.2346 2.2210 6.3282 49 1 0.0996 5.1415 6.1111 50 1 -1.1999 4.2131 5.3251 51 1 -2.2882 6.0294 6.9914 52 1 -4.5568 8.1161 8.2718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483942698.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:38 Heat of formation + Delta-G solvation = -86.416331 kcal Electronic energy + Delta-G solvation = -29253.348758 eV Core-core repulsion = 25251.669347 eV Total energy + Delta-G solvation = -4001.679411 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.32837 -40.18966 -39.04008 -37.35486 -36.64173 -35.81494 -33.32004 -32.93020 -32.57445 -31.53169 -30.67569 -28.27034 -26.41796 -25.98079 -24.54843 -23.29499 -22.54227 -21.82221 -21.21702 -20.55539 -20.02676 -19.69600 -18.08045 -17.96020 -17.24053 -16.93959 -16.55065 -16.42528 -16.03666 -15.95676 -15.40384 -15.34681 -15.23147 -14.94836 -14.80570 -14.75689 -14.09108 -14.04204 -14.01540 -13.63912 -13.49097 -13.28609 -13.21830 -12.97219 -12.91959 -12.87486 -12.61695 -12.43292 -12.22607 -12.12308 -12.06710 -11.96841 -11.81977 -11.66764 -11.57730 -11.54193 -11.35936 -10.84082 -10.41076 -10.05409 -10.04539 -9.61592 -9.43934 -8.49253 -5.98629 1.35122 1.40230 1.52267 1.55176 1.72061 1.95775 2.00040 2.27896 2.91960 3.17174 3.42704 3.56051 3.70964 3.82284 3.87019 3.89887 3.95106 4.22647 4.23799 4.32175 4.36135 4.38140 4.41006 4.45954 4.46646 4.50716 4.54758 4.65190 4.68850 4.72812 4.84602 4.87497 5.00814 5.03976 5.05446 5.08657 5.09251 5.18770 5.19203 5.36721 5.38662 5.39990 5.45841 5.46887 5.78766 5.81614 6.01965 6.04708 6.23543 6.55883 6.62207 7.08835 7.26028 7.51314 8.06056 8.68530 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014343 B = 0.002093 C = 0.001904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.715534 B =13377.247604 C =14705.348578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.143 4.143 3 C -0.046 4.046 4 H 0.054 0.946 5 C -0.108 4.108 6 C -0.154 4.154 7 C -0.119 4.119 8 C 0.514 3.486 9 O -0.573 6.573 10 N -0.617 5.617 11 C 0.097 3.903 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.141 3.859 15 H 0.050 0.950 16 C 0.062 3.938 17 N -0.666 5.666 18 C 0.066 3.934 19 C 0.440 3.560 20 O -0.620 6.620 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.921 5.921 26 Si 0.997 3.003 27 H -0.272 1.272 28 H -0.269 1.269 29 H -0.271 1.271 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.043 0.957 36 H 0.065 0.935 37 H 0.048 0.952 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.103 0.897 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.079 0.921 47 H 0.020 0.980 48 H 0.341 0.659 49 H 0.106 0.894 50 H 0.054 0.946 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.342 -12.018 -19.379 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.161 4.161 3 C -0.065 4.065 4 H 0.073 0.927 5 C -0.145 4.145 6 C -0.211 4.211 7 C -0.159 4.159 8 C 0.304 3.696 9 O -0.452 6.452 10 N -0.352 5.352 11 C -0.025 4.025 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.037 3.963 15 H 0.068 0.932 16 C -0.068 4.068 17 N -0.298 5.298 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.506 6.506 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.098 0.902 24 C -0.215 4.215 25 N -0.562 5.562 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.196 1.196 30 H 0.094 0.906 31 H 0.111 0.889 32 H 0.134 0.866 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.067 0.933 38 H 0.136 0.864 39 H 0.137 0.863 40 H 0.121 0.879 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.093 0.907 46 H 0.098 0.902 47 H 0.038 0.962 48 H 0.159 0.841 49 H 0.124 0.876 50 H 0.072 0.928 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.142 -12.141 -18.626 31.378 hybrid contribution -2.078 0.359 -0.050 2.110 sum 20.064 -11.782 -18.676 29.836 Atomic orbital electron populations 1.23677 0.96800 1.00648 1.01250 1.22860 0.95597 0.98203 0.99467 1.20177 0.96623 0.95517 0.94169 0.92747 1.21501 0.97442 1.03344 0.92258 1.21778 0.99964 1.01318 0.98062 1.21739 0.98002 1.06494 0.89616 1.21178 0.88858 0.75090 0.84426 1.90734 1.16971 1.50929 1.86572 1.48745 1.09191 1.72436 1.04832 1.22574 0.79417 1.02908 0.97585 1.22798 0.98812 1.00711 0.94146 1.22526 0.94352 1.02306 0.95913 1.21360 0.94806 0.95285 0.84861 0.93193 1.22228 0.96348 0.98651 0.89604 1.60114 1.28136 1.04539 1.37037 1.21511 0.95331 0.96029 0.93774 1.20714 0.83261 0.83318 0.89997 1.90483 1.70258 1.41223 1.48655 1.41939 1.36666 1.22915 1.19445 1.19732 1.19692 1.09274 0.97643 0.90162 1.26111 0.98488 0.94572 1.02322 1.69687 1.38029 1.12421 1.36056 0.84820 0.77691 0.78376 0.77126 1.19687 1.19398 1.19613 0.90644 0.88941 0.86558 0.90399 0.90214 0.93816 0.91620 0.93295 0.86429 0.86288 0.87869 0.89702 0.87467 0.90508 0.90336 0.90734 0.90246 0.96218 0.84142 0.87637 0.92808 0.77046 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.18 13.22 67.77 0.90 -3.29 16 2 C -0.14 -2.59 6.76 25.64 0.17 -2.42 16 3 C -0.05 -0.70 1.82 -11.54 -0.02 -0.72 16 4 H 0.05 1.14 7.60 -2.38 -0.02 1.12 16 5 C -0.11 -1.06 5.39 30.59 0.16 -0.90 16 6 C -0.15 -1.83 9.73 71.98 0.70 -1.13 16 7 C -0.12 -1.45 4.26 29.85 0.13 -1.33 16 8 C 0.51 11.12 7.32 87.66 0.64 11.76 16 9 O -0.57 -17.88 13.34 -3.04 -0.04 -17.92 16 10 N -0.62 -11.65 3.07 -788.50 -2.42 -14.07 16 11 C 0.10 0.96 6.64 86.78 0.58 1.53 16 12 C -0.13 -1.38 7.07 31.91 0.23 -1.16 16 13 C -0.11 -2.15 6.28 31.78 0.20 -1.95 16 14 C 0.14 3.38 2.98 45.34 0.14 3.52 16 15 H 0.05 1.43 8.13 -2.39 -0.02 1.41 16 16 C 0.06 1.77 5.10 86.30 0.44 2.21 16 17 N -0.67 -23.36 5.95 -517.95 -3.08 -26.43 16 18 C 0.07 2.53 6.16 85.56 0.53 3.06 16 19 C 0.44 22.13 7.82 87.66 0.69 22.82 16 20 O -0.62 -35.67 15.78 -3.08 -0.05 -35.72 16 21 N -0.57 -30.77 5.29 -306.98 -1.62 -32.39 16 22 C -0.33 -19.57 9.68 84.04 0.81 -18.75 16 23 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 24 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 25 N -0.92 -51.05 13.05 21.66 0.28 -50.77 16 26 Si 1.00 43.92 29.55 68.60 2.03 45.94 16 27 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 28 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 29 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 30 H 0.08 1.96 7.83 -2.91 -0.02 1.94 16 31 H 0.09 1.92 8.06 -2.91 -0.02 1.89 16 32 H 0.12 1.70 8.06 -2.91 -0.02 1.68 16 33 H 0.08 0.58 8.14 -2.38 -0.02 0.56 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.05 0.66 7.38 -2.38 -0.02 0.64 16 38 H 0.12 0.91 8.14 -2.38 -0.02 0.90 16 39 H 0.12 0.83 7.75 -2.39 -0.02 0.81 16 40 H 0.10 0.48 7.50 -2.39 -0.02 0.46 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 44 H 0.08 1.58 7.79 -2.39 -0.02 1.57 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 2.10 8.05 -2.39 -0.02 2.09 16 47 H 0.02 0.65 6.88 -2.39 -0.02 0.64 16 48 H 0.34 12.88 8.36 -89.69 -0.75 12.13 16 49 H 0.11 3.62 8.14 -2.39 -0.02 3.60 16 50 H 0.05 1.97 8.14 -2.38 -0.02 1.95 16 51 H 0.40 20.30 7.90 -92.71 -0.73 19.57 16 52 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -75.53 419.38 1.27 -74.26 By element: Atomic # 1 Polarization: 44.82 SS G_CDS: -0.58 Total: 44.24 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: 6.75 Total: 12.87 kcal Atomic # 7 Polarization: -116.83 SS G_CDS: -6.84 Total: -123.67 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -0.09 Total: -53.64 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Total: -75.53 1.27 -74.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483942698.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.160 kcal (2) G-P(sol) polarization free energy of solvation -75.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds