Wall clock time and date at job start Tue Mar 31 2020 20:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00179 * 2 1 4 4 H 1.09007 * 109.47104 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47511 * 120.00303 * 3 2 1 6 6 C 1.53001 * 109.47415 * 185.75751 * 5 3 2 7 7 C 1.53000 * 109.47211 * 240.00292 * 3 2 1 8 8 C 1.50700 * 109.46986 * 66.20161 * 7 3 2 9 9 O 1.21277 * 120.00537 * 6.04393 * 8 7 3 10 10 N 1.34781 * 120.00080 * 186.04025 * 8 7 3 11 11 C 1.47428 * 125.64668 * 355.12144 * 10 8 7 12 12 C 1.54907 * 104.83198 * 155.83064 * 11 10 8 13 13 C 1.55159 * 101.58381 * 37.00656 * 12 11 10 14 14 C 1.47023 * 125.65021 * 174.80490 * 10 8 7 15 15 H 1.09004 * 109.87797 * 300.51400 * 14 10 8 16 16 C 1.52990 * 109.88170 * 61.68195 * 14 10 8 17 17 N 1.46900 * 109.47230 * 184.90580 * 16 14 10 18 18 C 1.46908 * 111.00138 * 185.08895 * 17 16 14 19 19 C 1.50699 * 109.47055 * 184.53704 * 18 17 16 20 20 O 1.21296 * 120.00138 * 4.97171 * 19 18 17 21 21 N 1.34779 * 119.99818 * 184.96701 * 19 18 17 22 22 C 1.37100 * 119.99483 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00557 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99197 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00274 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99464 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47581 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47214 * 120.00346 * 26 24 22 29 29 H 1.48500 * 109.47277 * 240.00095 * 26 24 22 30 30 H 1.08004 * 120.00057 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00105 * 359.72300 * 1 2 3 32 32 H 1.08000 * 120.00348 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47004 * 305.75840 * 5 3 2 34 34 H 1.09001 * 109.47591 * 65.75655 * 5 3 2 35 35 H 1.08997 * 109.46838 * 304.33817 * 6 5 3 36 36 H 1.09000 * 109.47059 * 64.33939 * 6 5 3 37 37 H 1.09002 * 109.47256 * 184.33755 * 6 5 3 38 38 H 1.09003 * 109.47122 * 186.20040 * 7 3 2 39 39 H 1.08997 * 109.47225 * 306.20012 * 7 3 2 40 40 H 1.09004 * 110.36238 * 274.66696 * 11 10 8 41 41 H 1.09000 * 110.36971 * 36.87972 * 11 10 8 42 42 H 1.09004 * 111.00353 * 155.08237 * 12 11 10 43 43 H 1.09002 * 111.00414 * 278.89637 * 12 11 10 44 44 H 1.08995 * 110.71667 * 82.86262 * 13 12 11 45 45 H 1.09001 * 110.71929 * 205.95644 * 13 12 11 46 46 H 1.09004 * 109.47702 * 304.90327 * 16 14 10 47 47 H 1.09003 * 109.47332 * 64.89954 * 16 14 10 48 48 H 1.00895 * 111.00141 * 61.12964 * 17 16 14 49 49 H 1.09000 * 109.46443 * 304.53836 * 18 17 16 50 50 H 1.08990 * 109.47226 * 64.53111 * 18 17 16 51 51 H 0.96991 * 119.99897 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99726 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9432 1.3861 1.2491 6 6 3.5973 2.7673 1.3236 7 6 2.9430 1.3861 -1.2493 8 6 2.0692 1.4598 -2.4749 9 8 0.8663 1.5592 -2.3570 10 7 2.6246 1.4154 -3.7021 11 6 4.0702 1.3984 -3.9909 12 6 4.1880 0.7369 -5.3867 13 6 2.9356 1.3031 -6.1066 14 6 1.8891 1.3691 -4.9744 15 1 1.2531 0.4843 -5.0029 16 6 1.0378 2.6308 -5.1293 17 7 0.2187 2.5227 -6.3439 18 6 -0.5230 3.7665 -6.5912 19 6 -1.4338 3.5808 -7.7774 20 8 -1.5300 2.4923 -8.3037 21 7 -2.1416 4.6244 -8.2533 22 6 -2.9706 4.4553 -9.3321 23 1 -3.0568 3.4859 -9.8002 24 6 -3.6999 5.5314 -9.8231 25 7 -3.5946 6.7110 -9.2538 26 14 -4.8289 5.3012 -11.2934 27 1 -4.7686 3.8886 -11.7476 28 1 -6.2224 5.6367 -10.9048 29 1 -4.3938 6.1953 -12.3964 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9353 0.0004 33 1 2.3302 1.2261 2.1362 34 1 3.7168 0.6200 1.1991 35 1 4.1477 2.9586 0.4025 36 1 2.8269 3.5277 1.4512 37 1 4.2832 2.7993 2.1701 38 1 3.5694 2.2766 -1.1955 39 1 3.5753 0.5002 -1.3066 40 1 4.4635 2.4147 -4.0184 41 1 4.5996 0.8076 -3.2434 42 1 5.1028 1.0487 -5.8909 43 1 4.1375 -0.3492 -5.3098 44 1 3.1376 2.2960 -6.5083 45 1 2.6071 0.6283 -6.8970 46 1 0.3876 2.7394 -4.2612 47 1 1.6891 3.5014 -5.2065 48 1 -0.4073 1.7333 -6.2889 49 1 -1.1173 4.0159 -5.7122 50 1 0.1799 4.5740 -6.7956 51 1 -2.0644 5.4949 -7.8327 52 1 -4.1040 7.4620 -9.5964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483942701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:42 Heat of formation + Delta-G solvation = -63.719969 kcal Electronic energy + Delta-G solvation = -29320.949971 eV Core-core repulsion = 25320.254748 eV Total energy + Delta-G solvation = -4000.695223 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.49025 -38.42712 -38.03706 -36.56777 -35.18109 -33.79448 -32.53141 -31.93963 -31.21534 -30.46709 -29.41581 -26.77254 -25.69594 -24.72545 -23.44347 -22.42954 -21.56393 -20.91100 -19.92949 -19.37698 -18.87672 -17.85224 -17.27595 -16.78301 -16.07896 -15.63321 -15.34569 -15.28157 -14.69976 -14.60599 -14.41734 -14.10714 -13.95056 -13.86797 -13.66855 -13.41982 -13.34807 -13.23866 -12.96745 -12.56031 -12.30447 -12.20197 -12.03156 -11.96639 -11.68749 -11.52751 -11.47175 -11.39354 -11.35046 -11.07032 -10.96186 -10.83636 -10.80787 -10.73589 -10.32035 -10.19653 -9.90813 -9.49177 -9.34541 -8.80087 -8.38379 -7.99302 -7.91686 -6.38700 -3.79362 2.24772 2.56020 2.77531 3.18602 3.28826 3.36429 3.94258 4.14844 4.21299 4.34327 4.43694 4.48845 4.53910 4.64803 4.73822 4.89508 4.96565 5.00673 5.06868 5.10794 5.14042 5.18923 5.23183 5.27368 5.29098 5.32011 5.45113 5.53518 5.56916 5.59484 5.66546 5.69485 5.83837 5.85629 5.86855 5.87888 5.90648 5.99880 6.04140 6.08422 6.20958 6.27928 6.36260 6.56229 6.74963 7.25721 7.41856 7.58381 7.74229 8.09587 8.10100 8.64414 9.20840 9.57768 10.09014 10.79204 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002054 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.516505 B =13629.861686 C =14464.883620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.161 4.161 3 C -0.045 4.045 4 H 0.084 0.916 5 C -0.115 4.115 6 C -0.157 4.157 7 C -0.130 4.130 8 C 0.525 3.475 9 O -0.526 6.526 10 N -0.618 5.618 11 C 0.100 3.900 12 C -0.138 4.138 13 C -0.113 4.113 14 C 0.143 3.857 15 H 0.074 0.926 16 C 0.049 3.951 17 N -0.666 5.666 18 C 0.053 3.947 19 C 0.443 3.557 20 O -0.586 6.586 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.021 3.979 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.091 0.909 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.055 0.945 37 H 0.054 0.946 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.351 0.649 49 H 0.044 0.956 50 H 0.084 0.916 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.902 -9.391 19.992 29.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C -0.064 4.064 4 H 0.102 0.898 5 C -0.153 4.153 6 C -0.214 4.214 7 C -0.170 4.170 8 C 0.314 3.686 9 O -0.401 6.401 10 N -0.354 5.354 11 C -0.023 4.023 12 C -0.176 4.176 13 C -0.151 4.151 14 C 0.040 3.960 15 H 0.092 0.908 16 C -0.081 4.081 17 N -0.300 5.300 18 C -0.080 4.080 19 C 0.228 3.772 20 O -0.470 6.470 21 N -0.200 5.200 22 C -0.427 4.427 23 H 0.121 0.879 24 C -0.181 4.181 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.119 0.881 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.170 0.830 49 H 0.062 0.938 50 H 0.102 0.898 51 H 0.226 0.774 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 19.555 -9.716 19.318 29.155 hybrid contribution -1.140 0.532 0.130 1.265 sum 18.415 -9.184 19.448 28.314 Atomic orbital electron populations 1.23785 0.95973 1.01604 0.98444 1.22669 0.96002 0.97156 1.02117 1.20153 0.96537 0.97058 0.92626 0.89814 1.21534 0.98773 0.97567 0.97423 1.21865 1.00743 0.97103 1.01681 1.21762 0.98667 1.04114 0.92476 1.20373 0.88862 0.76134 0.83239 1.90722 1.15012 1.48572 1.85842 1.48631 1.07436 1.73917 1.05433 1.22328 0.81586 1.00815 0.97603 1.22836 0.99328 1.00641 0.94754 1.22577 0.93003 1.02905 0.96633 1.21473 0.93855 0.98341 0.82370 0.90762 1.22271 0.96640 0.97156 0.92074 1.60069 1.28463 1.05396 1.36024 1.21638 0.96147 0.93173 0.97050 1.19811 0.84576 0.85648 0.87140 1.90511 1.68749 1.25820 1.61932 1.41863 1.38738 1.10401 1.29029 1.19758 1.18851 0.97659 1.06474 0.87857 1.25273 0.98632 0.94772 0.99393 1.69624 1.42454 1.00567 1.41691 0.85794 0.79325 0.78621 0.80559 1.19217 1.20792 1.20759 0.89073 0.88415 0.88089 0.91532 0.91897 0.92512 0.92563 0.92669 0.88631 0.89227 0.91312 0.90792 0.89856 0.90758 0.90001 0.89543 0.93703 0.91424 0.82970 0.93826 0.89799 0.77438 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.69 13.43 29.02 0.39 -1.30 16 2 C -0.16 -1.51 7.90 -36.03 -0.28 -1.79 16 3 C -0.04 -0.37 1.79 -91.77 -0.16 -0.54 16 4 H 0.08 0.86 7.46 -51.93 -0.39 0.47 16 5 C -0.12 -0.72 5.38 -26.73 -0.14 -0.86 16 6 C -0.16 -0.88 9.78 37.16 0.36 -0.52 16 7 C -0.13 -1.00 4.10 -27.88 -0.11 -1.12 16 8 C 0.53 6.01 7.36 -10.98 -0.08 5.93 16 9 O -0.53 -8.00 13.27 5.56 0.07 -7.92 16 10 N -0.62 -6.41 3.07 -163.02 -0.50 -6.91 16 11 C 0.10 0.69 6.74 -2.53 -0.02 0.67 16 12 C -0.14 -0.96 7.08 -24.58 -0.17 -1.14 16 13 C -0.11 -1.15 6.28 -24.90 -0.16 -1.31 16 14 C 0.14 1.74 3.13 -66.96 -0.21 1.53 16 15 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 16 C 0.05 0.71 5.07 -3.83 -0.02 0.69 16 17 N -0.67 -11.54 6.01 -115.06 -0.69 -12.23 16 18 C 0.05 1.00 6.18 -4.97 -0.03 0.97 16 19 C 0.44 10.87 7.82 -10.98 -0.09 10.78 16 20 O -0.59 -16.30 15.63 5.54 0.09 -16.22 16 21 N -0.56 -14.77 5.29 -10.96 -0.06 -14.83 16 22 C -0.30 -8.51 9.68 -14.93 -0.14 -8.65 16 23 H 0.10 3.09 7.16 -52.49 -0.38 2.72 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 25 N -0.90 -25.06 13.05 55.50 0.72 -24.33 16 26 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 30 H 0.09 0.87 8.06 -52.48 -0.42 0.45 16 31 H 0.10 1.12 7.83 -52.49 -0.41 0.71 16 32 H 0.10 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.29 6.28 -51.93 -0.33 -0.04 16 36 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 38 H 0.10 0.59 6.25 -51.93 -0.32 0.27 16 39 H 0.09 0.54 7.67 -51.93 -0.40 0.14 16 40 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.07 0.37 7.29 -51.93 -0.38 -0.01 16 42 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.08 0.89 7.78 -51.93 -0.40 0.48 16 45 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 46 H 0.04 0.74 6.55 -51.93 -0.34 0.40 16 47 H 0.07 0.94 8.01 -51.93 -0.42 0.53 16 48 H 0.35 6.52 8.23 -39.29 -0.32 6.19 16 49 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 50 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 51 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 52 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 416.80 15.07 6.28 6.28 Total: -1.00 -33.23 416.80 -9.11 -42.34 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -9.04 Total: 13.57 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: -0.97 Total: 3.83 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.53 Total: -58.31 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: 0.16 Total: -24.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -33.23 -9.11 -42.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483942701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.375 kcal (2) G-P(sol) polarization free energy of solvation -33.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds