Wall clock time and date at job start Tue Mar 31 2020 20:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50698 * 120.00179 * 2 1 4 4 H 1.09007 * 109.47104 * 359.97438 * 3 2 1 5 5 C 1.52996 * 109.47511 * 120.00303 * 3 2 1 6 6 C 1.53001 * 109.47415 * 185.75751 * 5 3 2 7 7 C 1.53000 * 109.47211 * 240.00292 * 3 2 1 8 8 C 1.50700 * 109.46986 * 66.20161 * 7 3 2 9 9 O 1.21277 * 120.00537 * 6.04393 * 8 7 3 10 10 N 1.34781 * 120.00080 * 186.04025 * 8 7 3 11 11 C 1.47428 * 125.64668 * 355.12144 * 10 8 7 12 12 C 1.54907 * 104.83198 * 155.83064 * 11 10 8 13 13 C 1.55159 * 101.58381 * 37.00656 * 12 11 10 14 14 C 1.47023 * 125.65021 * 174.80490 * 10 8 7 15 15 H 1.09004 * 109.87797 * 300.51400 * 14 10 8 16 16 C 1.52990 * 109.88170 * 61.68195 * 14 10 8 17 17 N 1.46900 * 109.47230 * 184.90580 * 16 14 10 18 18 C 1.46908 * 111.00138 * 185.08895 * 17 16 14 19 19 C 1.50699 * 109.47055 * 184.53704 * 18 17 16 20 20 O 1.21296 * 120.00138 * 4.97171 * 19 18 17 21 21 N 1.34779 * 119.99818 * 184.96701 * 19 18 17 22 22 C 1.37100 * 119.99483 * 180.02562 * 21 19 18 23 23 H 1.07993 * 120.00557 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99197 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00274 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 119.99464 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.47581 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.47214 * 120.00346 * 26 24 22 29 29 H 1.48500 * 109.47277 * 240.00095 * 26 24 22 30 30 H 1.08004 * 120.00057 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00105 * 359.72300 * 1 2 3 32 32 H 1.08000 * 120.00348 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.47004 * 305.75840 * 5 3 2 34 34 H 1.09001 * 109.47591 * 65.75655 * 5 3 2 35 35 H 1.08997 * 109.46838 * 304.33817 * 6 5 3 36 36 H 1.09000 * 109.47059 * 64.33939 * 6 5 3 37 37 H 1.09002 * 109.47256 * 184.33755 * 6 5 3 38 38 H 1.09003 * 109.47122 * 186.20040 * 7 3 2 39 39 H 1.08997 * 109.47225 * 306.20012 * 7 3 2 40 40 H 1.09004 * 110.36238 * 274.66696 * 11 10 8 41 41 H 1.09000 * 110.36971 * 36.87972 * 11 10 8 42 42 H 1.09004 * 111.00353 * 155.08237 * 12 11 10 43 43 H 1.09002 * 111.00414 * 278.89637 * 12 11 10 44 44 H 1.08995 * 110.71667 * 82.86262 * 13 12 11 45 45 H 1.09001 * 110.71929 * 205.95644 * 13 12 11 46 46 H 1.09004 * 109.47702 * 304.90327 * 16 14 10 47 47 H 1.09003 * 109.47332 * 64.89954 * 16 14 10 48 48 H 1.00895 * 111.00141 * 61.12964 * 17 16 14 49 49 H 1.09000 * 109.46443 * 304.53836 * 18 17 16 50 50 H 1.08990 * 109.47226 * 64.53111 * 18 17 16 51 51 H 0.96991 * 119.99897 * 0.02562 * 21 19 18 52 52 H 0.97001 * 119.99726 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9432 1.3861 1.2491 6 6 3.5973 2.7673 1.3236 7 6 2.9430 1.3861 -1.2493 8 6 2.0692 1.4598 -2.4749 9 8 0.8663 1.5592 -2.3570 10 7 2.6246 1.4154 -3.7021 11 6 4.0702 1.3984 -3.9909 12 6 4.1880 0.7369 -5.3867 13 6 2.9356 1.3031 -6.1066 14 6 1.8891 1.3691 -4.9744 15 1 1.2531 0.4843 -5.0029 16 6 1.0378 2.6308 -5.1293 17 7 0.2187 2.5227 -6.3439 18 6 -0.5230 3.7665 -6.5912 19 6 -1.4338 3.5808 -7.7774 20 8 -1.5300 2.4923 -8.3037 21 7 -2.1416 4.6244 -8.2533 22 6 -2.9706 4.4553 -9.3321 23 1 -3.0568 3.4859 -9.8002 24 6 -3.6999 5.5314 -9.8231 25 7 -3.5946 6.7110 -9.2538 26 14 -4.8289 5.3012 -11.2934 27 1 -4.7686 3.8886 -11.7476 28 1 -6.2224 5.6367 -10.9048 29 1 -4.3938 6.1953 -12.3964 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 0.0045 32 1 1.8500 -0.9353 0.0004 33 1 2.3302 1.2261 2.1362 34 1 3.7168 0.6200 1.1991 35 1 4.1477 2.9586 0.4025 36 1 2.8269 3.5277 1.4512 37 1 4.2832 2.7993 2.1701 38 1 3.5694 2.2766 -1.1955 39 1 3.5753 0.5002 -1.3066 40 1 4.4635 2.4147 -4.0184 41 1 4.5996 0.8076 -3.2434 42 1 5.1028 1.0487 -5.8909 43 1 4.1375 -0.3492 -5.3098 44 1 3.1376 2.2960 -6.5083 45 1 2.6071 0.6283 -6.8970 46 1 0.3876 2.7394 -4.2612 47 1 1.6891 3.5014 -5.2065 48 1 -0.4073 1.7333 -6.2889 49 1 -1.1173 4.0159 -5.7122 50 1 0.1799 4.5740 -6.7956 51 1 -2.0644 5.4949 -7.8327 52 1 -4.1040 7.4620 -9.5964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483942701.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:41 Heat of formation + Delta-G solvation = -86.186076 kcal Electronic energy + Delta-G solvation = -29321.924175 eV Core-core repulsion = 25320.254748 eV Total energy + Delta-G solvation = -4001.669427 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.33812 -40.20850 -39.03199 -37.33451 -36.63609 -35.81406 -33.33106 -33.20080 -32.72005 -31.45448 -30.17859 -28.27136 -26.44304 -26.25295 -24.67995 -23.39227 -22.18585 -21.68804 -21.22820 -20.62497 -20.03421 -19.74053 -18.18161 -17.94870 -17.33637 -16.96919 -16.55066 -16.41282 -16.08883 -15.98439 -15.36309 -15.30911 -15.20519 -14.91661 -14.79794 -14.59050 -14.25637 -14.00676 -13.90779 -13.64297 -13.51415 -13.28280 -13.20422 -13.12243 -12.89084 -12.79446 -12.62939 -12.50044 -12.43638 -12.12587 -12.01012 -11.90255 -11.81867 -11.60278 -11.54882 -11.53107 -11.35048 -10.80971 -10.43147 -10.11632 -10.05901 -9.64091 -9.41039 -8.49686 -5.99035 1.34866 1.40175 1.47243 1.55045 1.71896 1.94940 1.99757 2.27758 2.93357 3.16850 3.43081 3.56671 3.71513 3.79716 3.88649 3.90741 3.94345 4.23282 4.24731 4.33047 4.33829 4.37918 4.41867 4.47076 4.48735 4.50406 4.53963 4.64609 4.67281 4.72074 4.78283 4.88612 4.96269 5.03726 5.07739 5.08522 5.14080 5.19632 5.23498 5.35305 5.37908 5.39057 5.45954 5.53281 5.77808 5.80026 6.00439 6.01858 6.24019 6.55164 6.62390 7.08183 7.25768 7.50475 8.05052 8.68062 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.015775 B = 0.002054 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.516505 B =13629.861686 C =14464.883620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.151 4.151 3 C -0.045 4.045 4 H 0.055 0.945 5 C -0.108 4.108 6 C -0.157 4.157 7 C -0.120 4.120 8 C 0.514 3.486 9 O -0.574 6.574 10 N -0.617 5.617 11 C 0.096 3.904 12 C -0.127 4.127 13 C -0.112 4.112 14 C 0.144 3.856 15 H 0.051 0.949 16 C 0.059 3.941 17 N -0.668 5.668 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.623 6.623 21 N -0.571 5.571 22 C -0.334 4.334 23 H 0.080 0.920 24 C -0.015 4.015 25 N -0.920 5.920 26 Si 0.996 3.004 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.269 1.269 30 H 0.095 0.905 31 H 0.077 0.923 32 H 0.120 0.880 33 H 0.060 0.940 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.043 0.957 37 H 0.065 0.935 38 H 0.118 0.882 39 H 0.118 0.882 40 H 0.083 0.917 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.023 0.977 47 H 0.078 0.922 48 H 0.341 0.659 49 H 0.055 0.945 50 H 0.106 0.894 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.778 -9.354 20.520 32.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.169 4.169 3 C -0.064 4.064 4 H 0.074 0.926 5 C -0.146 4.146 6 C -0.214 4.214 7 C -0.160 4.160 8 C 0.305 3.695 9 O -0.453 6.453 10 N -0.352 5.352 11 C -0.026 4.026 12 C -0.164 4.164 13 C -0.150 4.150 14 C 0.039 3.961 15 H 0.069 0.931 16 C -0.071 4.071 17 N -0.300 5.300 18 C -0.066 4.066 19 C 0.227 3.773 20 O -0.509 6.509 21 N -0.208 5.208 22 C -0.464 4.464 23 H 0.098 0.902 24 C -0.214 4.214 25 N -0.561 5.561 26 Si 0.820 3.180 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.194 1.194 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.138 0.862 33 H 0.079 0.921 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.041 0.959 47 H 0.096 0.904 48 H 0.159 0.841 49 H 0.073 0.927 50 H 0.124 0.876 51 H 0.230 0.770 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 22.485 -9.654 19.868 31.520 hybrid contribution -2.023 0.526 -0.017 2.090 sum 20.462 -9.128 19.851 29.935 Atomic orbital electron populations 1.23762 0.96840 1.00929 1.00977 1.22958 0.95676 0.98457 0.99807 1.20151 0.96544 0.95404 0.94348 0.92620 1.21482 0.98680 0.98624 0.95792 1.21872 1.00604 0.96237 1.02677 1.21792 0.98058 1.06424 0.89686 1.21167 0.88776 0.75142 0.84408 1.90716 1.17316 1.50732 1.86572 1.48745 1.08947 1.73102 1.04400 1.22627 0.79347 1.02309 0.98288 1.22834 0.98358 1.00826 0.94419 1.22511 0.94106 1.02656 0.95754 1.21333 0.94242 0.95956 0.84529 0.93064 1.22251 0.96120 0.99002 0.89712 1.60124 1.27954 1.04243 1.37694 1.21516 0.95786 0.94594 0.94724 1.20719 0.84213 0.84605 0.87795 1.90479 1.69861 1.27173 1.63422 1.41924 1.38972 1.10979 1.28921 1.19728 1.21091 0.97380 1.08197 0.90198 1.26108 0.99384 0.94169 1.01772 1.69684 1.42760 1.01069 1.42591 0.84825 0.77593 0.78357 0.77259 1.19728 1.19587 1.19367 0.88635 0.90464 0.86248 0.92096 0.89980 0.91529 0.93798 0.91572 0.86366 0.86420 0.89917 0.87705 0.87556 0.90308 0.90488 0.90740 0.95918 0.90409 0.84093 0.92745 0.87598 0.76986 0.91213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.20 13.43 67.79 0.91 -3.29 16 2 C -0.15 -2.74 7.90 25.65 0.20 -2.54 16 3 C -0.05 -0.71 1.79 -11.54 -0.02 -0.73 16 4 H 0.06 1.19 7.46 -2.38 -0.02 1.17 16 5 C -0.11 -1.10 5.38 30.59 0.16 -0.94 16 6 C -0.16 -1.39 9.78 71.98 0.70 -0.69 16 7 C -0.12 -1.52 4.10 29.85 0.12 -1.40 16 8 C 0.51 11.29 7.36 87.66 0.64 11.94 16 9 O -0.57 -18.12 13.27 -3.02 -0.04 -18.16 16 10 N -0.62 -11.81 3.07 -788.07 -2.42 -14.23 16 11 C 0.10 0.97 6.74 86.85 0.59 1.55 16 12 C -0.13 -1.38 7.08 31.99 0.23 -1.15 16 13 C -0.11 -2.16 6.28 31.78 0.20 -1.96 16 14 C 0.14 3.49 3.13 45.33 0.14 3.63 16 15 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 16 C 0.06 1.73 5.07 86.30 0.44 2.17 16 17 N -0.67 -23.65 6.01 -517.94 -3.12 -26.77 16 18 C 0.07 2.54 6.18 85.56 0.53 3.07 16 19 C 0.44 22.13 7.82 87.66 0.69 22.82 16 20 O -0.62 -35.92 15.63 -3.08 -0.05 -35.97 16 21 N -0.57 -30.66 5.29 -306.98 -1.62 -32.28 16 22 C -0.33 -19.59 9.68 84.04 0.81 -18.78 16 23 H 0.08 4.98 7.16 -2.91 -0.02 4.96 16 24 C -0.01 -0.80 5.50 84.93 0.47 -0.34 16 25 N -0.92 -50.86 13.05 21.66 0.28 -50.58 16 26 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 30 H 0.10 1.95 8.06 -2.91 -0.02 1.92 16 31 H 0.08 2.00 7.83 -2.91 -0.02 1.97 16 32 H 0.12 1.71 8.06 -2.91 -0.02 1.69 16 33 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.46 6.28 -2.39 -0.02 0.44 16 36 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 38 H 0.12 1.00 6.25 -2.39 -0.01 0.99 16 39 H 0.12 0.88 7.67 -2.39 -0.02 0.86 16 40 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 41 H 0.10 0.48 7.29 -2.39 -0.02 0.46 16 42 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 44 H 0.08 1.56 7.78 -2.39 -0.02 1.54 16 45 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 46 H 0.02 0.77 6.55 -2.39 -0.02 0.76 16 47 H 0.08 2.10 8.01 -2.39 -0.02 2.08 16 48 H 0.34 13.28 8.23 -89.70 -0.74 12.54 16 49 H 0.05 1.99 8.13 -2.39 -0.02 1.97 16 50 H 0.11 3.61 8.14 -2.39 -0.02 3.59 16 51 H 0.40 20.26 7.90 -92.72 -0.73 19.53 16 52 H 0.28 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -75.32 416.80 1.32 -74.00 By element: Atomic # 1 Polarization: 45.28 SS G_CDS: -0.56 Total: 44.72 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 6.81 Total: 13.37 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -6.87 Total: -123.86 kcal Atomic # 8 Polarization: -54.04 SS G_CDS: -0.09 Total: -54.13 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -75.32 1.32 -74.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483942701.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.189 kcal (2) G-P(sol) polarization free energy of solvation -75.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds