Wall clock time and date at job start Tue Mar 31 2020 20:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99745 * 2 1 4 4 H 1.08999 * 109.47060 * 0.02562 * 3 2 1 5 5 C 1.53004 * 109.47261 * 239.99674 * 3 2 1 6 6 C 1.52996 * 109.46697 * 65.00143 * 5 3 2 7 7 C 1.53005 * 109.46648 * 119.99894 * 3 2 1 8 8 C 1.50697 * 109.47363 * 295.00033 * 7 3 2 9 9 O 1.21280 * 119.99823 * 359.97438 * 8 7 3 10 10 N 1.34775 * 119.99909 * 180.28268 * 8 7 3 11 11 C 1.47419 * 125.65197 * 354.81473 * 10 8 7 12 12 C 1.54911 * 104.83509 * 155.83939 * 11 10 8 13 13 C 1.55157 * 101.57782 * 37.01401 * 12 11 10 14 14 C 1.47023 * 125.64774 * 174.51772 * 10 8 7 15 15 H 1.09004 * 109.87903 * 300.50549 * 14 10 8 16 16 C 1.53001 * 109.88321 * 61.67129 * 14 10 8 17 17 N 1.46908 * 109.47244 * 184.52287 * 16 14 10 18 18 C 1.46892 * 111.00131 * 185.03785 * 17 16 14 19 19 C 1.50699 * 109.47110 * 180.02562 * 18 17 16 20 20 O 1.21298 * 119.99962 * 359.97438 * 19 18 17 21 21 N 1.34774 * 120.00066 * 180.02562 * 19 18 17 22 22 C 1.37099 * 120.00226 * 179.97438 * 21 19 18 23 23 H 1.08002 * 119.99914 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00494 * 180.02562 * 22 21 19 25 25 N 1.31409 * 120.00563 * 179.97438 * 24 22 21 26 26 Si 1.86803 * 119.99712 * 359.97438 * 24 22 21 27 27 H 1.48510 * 109.46970 * 90.00459 * 26 24 22 28 28 H 1.48501 * 109.47512 * 210.00157 * 26 24 22 29 29 H 1.48501 * 109.47527 * 330.00871 * 26 24 22 30 30 H 1.08002 * 119.99960 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00241 * 0.02562 * 1 2 3 32 32 H 1.08000 * 120.00241 * 179.97438 * 2 1 3 33 33 H 1.08993 * 109.47202 * 185.00309 * 5 3 2 34 34 H 1.09001 * 109.47136 * 305.00590 * 5 3 2 35 35 H 1.09001 * 109.47256 * 299.99764 * 6 5 3 36 36 H 1.08998 * 109.47309 * 59.99655 * 6 5 3 37 37 H 1.08996 * 109.47182 * 180.02562 * 6 5 3 38 38 H 1.08999 * 109.46951 * 174.99930 * 7 3 2 39 39 H 1.08999 * 109.47116 * 55.00197 * 7 3 2 40 40 H 1.09005 * 110.37171 * 274.68382 * 11 10 8 41 41 H 1.09005 * 110.36163 * 36.89423 * 11 10 8 42 42 H 1.09000 * 111.00103 * 155.08722 * 12 11 10 43 43 H 1.08994 * 111.00281 * 278.90362 * 12 11 10 44 44 H 1.08995 * 110.72311 * 82.86022 * 13 12 11 45 45 H 1.09000 * 110.71515 * 205.96084 * 13 12 11 46 46 H 1.09001 * 109.47365 * 304.51951 * 16 14 10 47 47 H 1.08995 * 109.47166 * 64.52401 * 16 14 10 48 48 H 1.00902 * 110.99222 * 61.07847 * 17 16 14 49 49 H 1.09007 * 109.47128 * 299.99927 * 18 17 16 50 50 H 1.09000 * 109.47347 * 59.99860 * 18 17 16 51 51 H 0.96999 * 119.99838 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00261 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9432 1.3863 -1.2492 6 6 2.0565 1.4308 -2.4952 7 6 2.9430 1.3862 1.2493 8 6 2.0697 1.4300 2.4766 9 8 0.8626 1.3999 2.3633 10 7 2.6299 1.5088 3.6999 11 6 4.0744 1.4513 3.9887 12 6 4.2370 2.1819 5.3451 13 6 2.9534 1.7367 6.0944 14 6 1.9020 1.6727 4.9667 15 1 1.3227 2.5958 4.9447 16 6 0.9737 0.4775 5.1918 17 7 0.1725 0.7009 6.4028 18 6 -0.6452 -0.4780 6.7179 19 6 -1.4516 -0.2117 7.9629 20 8 -1.3543 0.8551 8.5319 21 7 -2.2802 -1.1592 8.4445 22 6 -3.0134 -0.9172 9.5774 23 1 -2.9268 0.0326 10.0841 24 6 -3.8673 -1.8943 10.0744 25 7 -4.5697 -1.6625 11.1605 26 14 -4.0166 -3.5374 9.1984 27 1 -3.0145 -4.4850 9.7494 28 1 -5.3813 -4.0857 9.4037 29 1 -3.7724 -3.3482 7.7459 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5540 2.2879 -1.2055 34 1 3.5906 0.5106 -1.2951 35 1 1.4456 0.5291 -2.5389 36 1 1.4089 2.3064 -2.4493 37 1 2.6831 1.4881 -3.3852 38 1 3.5539 2.2878 1.2057 39 1 3.5905 0.5105 1.2952 40 1 4.4034 0.4156 4.0738 41 1 4.6377 1.9647 3.2095 42 1 5.1317 1.8422 5.8669 43 1 4.2544 3.2629 5.2069 44 1 3.0939 0.7573 6.5517 45 1 2.6699 2.4743 6.8452 46 1 0.3112 0.3653 4.3336 47 1 1.5691 -0.4275 5.3120 48 1 -0.4020 1.5251 6.3092 49 1 -1.3189 -0.6856 5.8866 50 1 0.0046 -1.3375 6.8824 51 1 -2.3577 -2.0125 7.9897 52 1 -5.1661 -2.3445 11.5072 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483942704.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:20:45 Heat of formation + Delta-G solvation = -56.369231 kcal Electronic energy + Delta-G solvation = -29371.320648 eV Core-core repulsion = 25370.944177 eV Total energy + Delta-G solvation = -4000.376471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.52674 -38.53396 -38.14661 -36.62692 -35.29225 -33.84544 -32.16587 -31.95104 -31.63085 -30.71616 -29.86369 -26.93741 -25.43171 -24.59662 -23.22211 -22.41714 -21.95884 -21.08667 -19.85532 -19.43259 -19.02012 -18.24186 -17.24558 -16.77560 -15.94782 -15.72791 -15.46856 -15.22047 -14.89425 -14.76854 -14.52056 -14.33347 -13.99713 -13.83182 -13.72421 -13.44888 -13.30412 -13.12921 -12.87136 -12.59409 -12.47609 -12.31709 -12.17303 -12.00894 -11.73920 -11.67750 -11.60140 -11.50979 -11.39896 -11.16230 -11.12023 -10.89351 -10.87057 -10.75944 -10.56487 -9.98455 -9.94525 -9.53746 -9.29638 -8.85002 -8.50739 -8.15258 -8.05169 -6.28015 -3.79163 2.27265 2.51088 2.72443 3.05857 3.09632 3.17419 3.78763 4.10842 4.13387 4.27000 4.35561 4.42516 4.47252 4.63326 4.69914 4.89092 4.92575 4.94014 4.95731 5.04543 5.12131 5.13863 5.17805 5.23005 5.25275 5.36980 5.39489 5.51650 5.53973 5.57621 5.63208 5.63319 5.70232 5.79688 5.80685 5.83570 5.90107 5.91070 5.94962 5.99108 5.99582 6.17092 6.28372 6.57502 6.76350 7.12718 7.36413 7.61317 7.63424 8.04856 8.18010 8.63484 8.98341 9.46069 9.86824 10.85157 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.002272 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.518489 B =12323.286760 C =13904.965892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.156 4.156 3 C -0.044 4.044 4 H 0.081 0.919 5 C -0.115 4.115 6 C -0.152 4.152 7 C -0.129 4.129 8 C 0.525 3.475 9 O -0.525 6.525 10 N -0.619 5.619 11 C 0.100 3.900 12 C -0.138 4.138 13 C -0.113 4.113 14 C 0.143 3.857 15 H 0.075 0.925 16 C 0.049 3.951 17 N -0.664 5.664 18 C 0.051 3.949 19 C 0.452 3.548 20 O -0.564 6.564 21 N -0.592 5.592 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.100 0.900 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.067 0.933 48 H 0.351 0.649 49 H 0.044 0.956 50 H 0.085 0.915 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.311 3.773 -25.150 33.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.174 4.174 3 C -0.063 4.063 4 H 0.099 0.901 5 C -0.153 4.153 6 C -0.209 4.209 7 C -0.169 4.169 8 C 0.314 3.686 9 O -0.400 6.400 10 N -0.354 5.354 11 C -0.023 4.023 12 C -0.176 4.176 13 C -0.151 4.151 14 C 0.039 3.961 15 H 0.093 0.907 16 C -0.081 4.081 17 N -0.297 5.297 18 C -0.082 4.082 19 C 0.238 3.762 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.108 0.892 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.110 0.890 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.092 0.908 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.100 0.900 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.170 0.830 49 H 0.062 0.938 50 H 0.104 0.896 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 21.022 4.228 -24.322 32.424 hybrid contribution -0.887 -1.504 -1.121 2.075 sum 20.135 2.724 -25.443 32.560 Atomic orbital electron populations 1.23723 0.95931 1.01428 0.98604 1.22594 0.95971 0.96944 1.01871 1.20169 0.96561 0.97203 0.92385 0.90070 1.21532 0.97841 1.01857 0.94055 1.21758 0.99839 1.02239 0.97049 1.21702 0.98636 1.04035 0.92528 1.20366 0.88920 0.76113 0.83243 1.90730 1.14657 1.48818 1.85826 1.48638 1.07677 1.73250 1.05874 1.22328 0.81492 1.00660 0.97840 1.22836 0.99114 1.00617 0.94993 1.22578 0.92589 1.03479 0.96481 1.21475 0.93661 0.98387 0.82534 0.90708 1.22278 0.96379 0.97552 0.91913 1.59997 1.28981 1.05455 1.35298 1.21667 0.95731 0.94333 0.96508 1.19712 0.83501 0.85727 0.87306 1.90559 1.67802 1.25222 1.61019 1.42208 1.39732 1.14867 1.26320 1.19431 1.18801 1.03986 1.01020 0.86279 1.25035 0.96580 0.98265 0.96342 1.69621 1.26646 1.34813 1.21157 0.86673 0.78780 0.84295 0.79655 1.19619 1.20199 1.19522 0.89178 0.88608 0.88171 0.91888 0.91865 0.92345 0.92775 0.92914 0.88970 0.89080 0.91356 0.90756 0.89835 0.90709 0.90013 0.89461 0.93615 0.91414 0.83034 0.93808 0.89643 0.79706 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.65 13.22 29.02 0.38 -1.27 16 2 C -0.16 -1.42 6.76 -36.02 -0.24 -1.67 16 3 C -0.04 -0.35 1.82 -91.76 -0.17 -0.51 16 4 H 0.08 0.77 7.60 -51.93 -0.39 0.38 16 5 C -0.12 -0.67 5.39 -26.73 -0.14 -0.82 16 6 C -0.15 -0.93 9.73 37.16 0.36 -0.57 16 7 C -0.13 -0.92 4.10 -27.88 -0.11 -1.03 16 8 C 0.52 5.68 7.42 -10.99 -0.08 5.60 16 9 O -0.52 -7.59 12.96 5.56 0.07 -7.52 16 10 N -0.62 -6.07 3.07 -163.02 -0.50 -6.57 16 11 C 0.10 0.65 6.74 -2.53 -0.02 0.63 16 12 C -0.14 -0.92 7.08 -24.58 -0.17 -1.09 16 13 C -0.11 -1.11 6.27 -24.90 -0.16 -1.26 16 14 C 0.14 1.65 3.13 -66.96 -0.21 1.44 16 15 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 16 C 0.05 0.67 5.07 -3.82 -0.02 0.65 16 17 N -0.66 -10.90 5.89 -115.06 -0.68 -11.58 16 18 C 0.05 0.90 6.16 -4.98 -0.03 0.87 16 19 C 0.45 10.62 7.82 -10.99 -0.09 10.53 16 20 O -0.56 -15.47 15.78 5.54 0.09 -15.39 16 21 N -0.59 -14.55 5.09 -10.96 -0.06 -14.60 16 22 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 23 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -26.17 13.96 55.50 0.77 -25.40 16 26 Si 0.88 19.84 27.74 -169.99 -4.71 15.12 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 29 H -0.27 -5.60 6.52 56.52 0.37 -5.23 16 30 H 0.09 0.88 8.06 -52.49 -0.42 0.45 16 31 H 0.10 1.07 7.83 -52.49 -0.41 0.66 16 32 H 0.10 0.84 8.06 -52.49 -0.42 0.41 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.39 7.38 -51.93 -0.38 0.01 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.09 0.49 7.95 -51.93 -0.41 0.08 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.07 0.33 7.46 -51.93 -0.39 -0.05 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.86 7.78 -51.93 -0.40 0.45 16 45 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.05 0.71 6.56 -51.93 -0.34 0.37 16 47 H 0.07 0.89 8.02 -51.93 -0.42 0.48 16 48 H 0.35 6.11 8.48 -39.29 -0.33 5.77 16 49 H 0.04 0.73 8.14 -51.92 -0.42 0.30 16 50 H 0.09 1.36 8.14 -51.93 -0.42 0.93 16 51 H 0.37 8.05 5.76 -40.82 -0.24 7.81 16 52 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 415.91 15.07 6.27 6.27 Total: -1.00 -34.32 415.91 -8.89 -43.20 By element: Atomic # 1 Polarization: 22.04 SS G_CDS: -9.19 Total: 12.85 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -0.95 Total: 3.61 kcal Atomic # 7 Polarization: -57.69 SS G_CDS: -0.46 Total: -58.15 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.16 Total: -22.90 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.71 Total: 15.12 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.32 -8.89 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483942704.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.165 kcal (2) G-P(sol) polarization free energy of solvation -34.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds