Wall clock time and date at job start Tue Mar 31 2020 20:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47016 * 2 1 4 4 H 1.09000 * 109.47416 * 55.00224 * 3 2 1 5 5 C 1.53004 * 109.47489 * 295.00279 * 3 2 1 6 6 C 1.50701 * 109.47362 * 175.00037 * 3 2 1 7 7 O 1.21284 * 119.99926 * 23.58375 * 6 3 2 8 8 N 1.34881 * 120.00357 * 203.58983 * 6 3 2 9 9 C 1.44807 * 120.20697 * 175.20182 * 8 6 3 10 10 C 1.51414 * 113.24902 * 269.19212 * 9 8 6 11 11 C 1.51297 * 114.15987 * 298.00779 * 10 9 8 12 12 H 1.09737 * 110.62803 * 177.32305 * 11 10 9 13 13 C 1.54071 * 108.43741 * 299.24343 * 11 10 9 14 14 C 1.53937 * 105.06729 * 94.10679 * 13 11 10 15 15 C 1.52065 * 105.73361 * 10.36294 * 14 13 11 16 16 H 1.09236 * 108.57946 * 124.08024 * 15 14 13 17 17 C 1.49387 * 120.07644 * 354.92123 * 8 6 3 18 18 N 1.48095 * 109.47550 * 5.75806 * 15 14 13 19 19 C 1.46882 * 111.18054 * 100.82512 * 18 15 14 20 20 C 1.50699 * 109.47462 * 72.31874 * 19 18 15 21 21 O 1.21290 * 119.99797 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00229 * 179.97438 * 20 19 18 23 23 C 1.37100 * 120.00267 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99597 * 0.02562 * 23 22 20 25 25 C 1.38945 * 120.00115 * 179.97438 * 23 22 20 26 26 N 1.31409 * 120.00297 * 0.02562 * 25 23 22 27 27 Si 1.86802 * 119.99873 * 179.97438 * 25 23 22 28 28 H 1.48502 * 109.46886 * 90.00900 * 27 25 23 29 29 H 1.48507 * 109.47000 * 210.00262 * 27 25 23 30 30 H 1.48495 * 109.47390 * 330.00218 * 27 25 23 31 31 H 1.08997 * 109.47325 * 299.99367 * 1 2 3 32 32 H 1.08993 * 109.47135 * 59.99857 * 1 2 3 33 33 H 1.09001 * 109.46763 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47242 * 240.00004 * 2 1 3 35 35 H 1.09001 * 109.47407 * 119.99963 * 2 1 3 36 36 H 1.09006 * 109.46327 * 305.94948 * 5 3 2 37 37 H 1.08995 * 109.46931 * 65.94361 * 5 3 2 38 38 H 1.08999 * 109.47375 * 185.95088 * 5 3 2 39 39 H 1.08945 * 109.07556 * 147.37230 * 9 8 6 40 40 H 1.09317 * 108.43643 * 29.76933 * 9 8 6 41 41 H 1.09180 * 108.77013 * 59.48514 * 10 9 8 42 42 H 1.09258 * 108.57024 * 176.75190 * 10 9 8 43 43 H 1.09377 * 110.61593 * 213.35117 * 13 11 10 44 44 H 1.09350 * 110.65751 * 334.81279 * 13 11 10 45 45 H 1.09121 * 110.52797 * 250.82671 * 14 13 11 46 46 H 1.09276 * 110.28888 * 129.44419 * 14 13 11 47 47 H 1.09039 * 109.55071 * 11.53544 * 17 8 6 48 48 H 1.08988 * 109.63958 * 251.32659 * 17 8 6 49 49 H 1.09003 * 109.47445 * 192.32569 * 19 18 15 50 50 H 1.09007 * 109.47151 * 312.31734 * 19 18 15 51 51 H 0.97003 * 119.99941 * 0.02562 * 22 20 19 52 52 H 0.96995 * 120.00438 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1266 -1.3073 6 6 3.5419 1.4443 0.1238 7 8 4.1797 0.4707 -0.2170 8 7 4.1769 2.5288 0.6138 9 6 5.6081 2.4983 0.8320 10 6 5.9909 2.0405 2.2235 11 6 5.4858 2.9382 3.3317 12 1 5.7544 2.5287 4.3137 13 6 6.0902 4.3418 3.1353 14 6 5.0348 5.1231 2.3319 15 6 3.7895 4.2504 2.3290 16 1 2.9573 4.8301 2.7350 17 6 3.4062 3.7693 0.9279 18 7 4.0104 3.0720 3.1983 19 6 3.3697 3.2510 4.5079 20 6 1.8748 3.1361 4.3558 21 8 1.3908 2.9253 3.2638 22 7 1.0758 3.2665 5.4333 23 6 -0.2842 3.1615 5.2950 24 1 -0.7151 2.9738 4.3226 25 6 -1.1078 3.2954 6.4059 26 7 -0.5835 3.5233 7.5891 27 14 -2.9609 3.1530 6.2173 28 1 -3.3690 1.7363 6.3952 29 1 -3.6289 3.9932 7.2436 30 1 -3.3577 3.6163 4.8634 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 1.9802 1.5297 -2.1516 37 1 0.5500 2.2198 -1.3477 38 1 2.0870 3.1174 -1.3540 39 1 6.0162 3.4932 0.6573 40 1 6.0541 1.8142 0.1053 41 1 5.5976 1.0346 2.3831 42 1 7.0806 1.9903 2.2859 43 1 6.2692 4.8226 4.1013 44 1 7.0294 4.2829 2.5784 45 1 5.3813 5.2961 1.3118 46 1 4.8230 6.0802 2.8149 47 1 2.3379 3.5532 0.8959 48 1 3.6432 4.5427 0.1974 49 1 3.7252 2.4826 5.1944 50 1 3.6201 4.2354 4.9034 51 1 1.4629 3.4347 6.3066 52 1 -1.1585 3.6172 8.3645 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484013886.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:22:09 Heat of formation + Delta-G solvation = -70.284246 kcal Electronic energy + Delta-G solvation = -32298.567126 eV Core-core repulsion = 28297.587254 eV Total energy + Delta-G solvation = -4000.979872 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.73404 -39.06958 -37.79311 -35.22566 -34.72634 -33.94922 -32.98376 -31.75408 -31.12451 -29.64333 -27.97739 -27.12535 -25.71734 -24.99284 -24.02064 -22.93308 -21.10478 -20.38872 -19.47810 -19.15393 -18.30918 -17.84404 -16.99060 -16.05362 -15.91832 -15.76552 -15.10971 -14.86854 -14.54001 -14.49601 -14.18261 -14.09374 -13.89308 -13.50436 -13.31111 -13.10930 -12.83381 -12.65083 -12.32772 -12.22708 -12.07458 -11.96047 -11.83373 -11.69392 -11.54309 -11.37656 -11.24598 -11.21528 -11.10225 -10.89309 -10.74819 -10.66629 -10.43647 -10.41423 -10.23047 -10.22178 -10.18683 -9.50170 -9.21573 -8.47214 -8.30380 -8.02454 -7.96428 -6.42627 -3.83226 3.03456 3.16403 3.25327 3.29863 3.34117 3.89109 3.96842 4.21340 4.58000 4.62756 4.82860 4.86356 5.04297 5.08241 5.12331 5.18750 5.23514 5.24857 5.32103 5.43433 5.50943 5.55004 5.62347 5.64090 5.66969 5.74747 5.76252 5.78857 5.82798 5.84274 5.87884 5.93520 5.96739 6.08346 6.10982 6.13761 6.17633 6.23209 6.25598 6.29500 6.37942 6.41791 6.59639 6.68119 6.90494 7.18615 7.28015 7.53791 7.73362 8.05215 8.60593 8.61629 9.17410 9.54207 10.05586 10.75236 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.010304 B = 0.004511 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.621680 B = 6204.879673 C = 8151.573944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.097 4.097 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.139 4.139 6 C 0.533 3.467 7 O -0.560 6.560 8 N -0.587 5.587 9 C 0.125 3.875 10 C -0.120 4.120 11 C 0.069 3.931 12 H 0.082 0.918 13 C -0.143 4.143 14 C -0.139 4.139 15 C 0.059 3.941 16 H 0.082 0.918 17 C 0.130 3.870 18 N -0.470 5.470 19 C 0.036 3.964 20 C 0.447 3.553 21 O -0.576 6.576 22 N -0.566 5.566 23 C -0.296 4.296 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.903 5.903 27 Si 0.928 3.072 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.062 0.938 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.102 0.898 48 H 0.061 0.939 49 H 0.086 0.914 50 H 0.047 0.953 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.317 2.727 -10.628 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.135 4.135 3 C -0.139 4.139 4 H 0.136 0.864 5 C -0.197 4.197 6 C 0.323 3.677 7 O -0.439 6.439 8 N -0.319 5.319 9 C 0.002 3.998 10 C -0.159 4.159 11 C -0.040 4.040 12 H 0.100 0.900 13 C -0.182 4.182 14 C -0.178 4.178 15 C -0.051 4.051 16 H 0.101 0.899 17 C 0.007 3.993 18 N -0.193 5.193 19 C -0.095 4.095 20 C 0.232 3.768 21 O -0.459 6.459 22 N -0.203 5.203 23 C -0.425 4.425 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.544 5.544 27 Si 0.755 3.245 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.195 1.195 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.086 0.914 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.120 0.880 48 H 0.079 0.921 49 H 0.104 0.896 50 H 0.065 0.935 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.983 1.622 -11.580 16.042 hybrid contribution -0.313 0.913 1.367 1.673 sum 10.670 2.534 -10.213 14.986 Atomic orbital electron populations 1.21815 0.95603 1.01350 1.02203 1.21252 0.95426 0.94478 1.02384 1.21430 0.92034 0.99357 1.01058 0.86394 1.21765 1.02024 0.99900 0.95961 1.20631 0.90183 0.81534 0.75390 1.90608 1.68508 1.33943 1.50808 1.47836 1.07268 1.13653 1.63101 1.20500 0.81738 1.01288 0.96317 1.21334 0.99482 1.00453 0.94673 1.22538 0.87984 0.94774 0.98712 0.89998 1.22840 0.98875 0.96242 1.00288 1.22403 0.95594 0.98927 1.00854 1.22375 0.97533 0.90445 0.94745 0.89933 1.22308 0.97992 0.85283 0.93713 1.64335 1.06946 1.37085 1.10901 1.22068 0.95418 1.00620 0.91427 1.19676 0.87149 0.84411 0.85572 1.90444 1.75798 1.53700 1.25996 1.41872 1.06723 1.62948 1.08725 1.19655 0.80961 1.45812 0.96106 0.87933 1.25236 1.00580 0.97385 0.94731 1.69606 1.36401 1.49366 0.99049 0.85896 0.82292 0.78216 0.78108 1.20438 1.21014 1.19451 0.91879 0.92902 0.93049 0.91955 0.91879 0.92619 0.91424 0.92682 0.91761 0.90834 0.91431 0.91460 0.91831 0.90935 0.91089 0.91421 0.87969 0.92131 0.89614 0.93477 0.77637 0.91933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.67 37.16 0.36 -1.75 16 2 C -0.10 -1.50 4.83 -26.73 -0.13 -1.63 16 3 C -0.12 -1.82 1.86 -91.77 -0.17 -1.99 16 4 H 0.12 2.10 5.99 -51.93 -0.31 1.79 16 5 C -0.14 -1.73 8.56 37.16 0.32 -1.41 16 6 C 0.53 8.92 6.80 -10.94 -0.07 8.85 16 7 O -0.56 -10.85 15.69 5.55 0.09 -10.77 16 8 N -0.59 -8.52 2.45 -173.42 -0.43 -8.94 16 9 C 0.13 1.60 5.03 -5.75 -0.03 1.57 16 10 C -0.12 -1.49 5.04 -28.39 -0.14 -1.63 16 11 C 0.07 0.85 3.21 -66.99 -0.22 0.63 16 12 H 0.08 0.97 7.73 -51.51 -0.40 0.57 16 13 C -0.14 -1.44 5.98 -25.68 -0.15 -1.59 16 14 C -0.14 -1.47 5.74 -26.72 -0.15 -1.63 16 15 C 0.06 0.81 1.88 -67.52 -0.13 0.69 16 16 H 0.08 1.33 6.89 -51.80 -0.36 0.97 16 17 C 0.13 1.76 5.23 -2.43 -0.01 1.74 16 18 N -0.47 -7.20 3.75 -218.20 -0.82 -8.02 16 19 C 0.04 0.61 5.21 -4.99 -0.03 0.59 16 20 C 0.45 9.78 7.24 -10.99 -0.08 9.70 16 21 O -0.58 -13.77 14.17 5.55 0.08 -13.69 16 22 N -0.57 -13.67 5.29 -10.97 -0.06 -13.73 16 23 C -0.30 -7.90 9.68 -14.93 -0.14 -8.04 16 24 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.13 13.05 55.50 0.72 -23.40 16 27 Si 0.93 20.63 29.55 -169.99 -5.02 15.60 16 28 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 30 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.05 0.64 6.70 -51.93 -0.35 0.29 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.07 0.78 6.86 -51.93 -0.36 0.42 16 38 H 0.05 0.63 7.32 -51.93 -0.38 0.25 16 39 H 0.06 0.68 5.86 -51.96 -0.30 0.38 16 40 H 0.07 1.01 7.29 -51.75 -0.38 0.63 16 41 H 0.07 1.02 8.16 -51.83 -0.42 0.60 16 42 H 0.07 0.67 8.11 -51.78 -0.42 0.25 16 43 H 0.06 0.61 8.17 -51.72 -0.42 0.19 16 44 H 0.07 0.62 7.65 -51.73 -0.40 0.23 16 45 H 0.07 0.67 6.63 -51.86 -0.34 0.32 16 46 H 0.07 0.69 8.17 -51.77 -0.42 0.27 16 47 H 0.10 1.58 4.88 -51.91 -0.25 1.32 16 48 H 0.06 0.67 7.77 -51.94 -0.40 0.27 16 49 H 0.09 1.37 7.86 -51.93 -0.41 0.97 16 50 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 51 H 0.39 9.20 7.90 -40.82 -0.32 8.88 16 52 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -30.39 390.81 -9.11 -39.49 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -8.68 Total: 13.00 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -0.88 Total: 4.56 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: -0.58 Total: -54.10 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -30.39 -9.11 -39.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484013886.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.791 kcal (2) G-P(sol) polarization free energy of solvation -30.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds