Wall clock time and date at job start Tue Mar 31 2020 20:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52994 * 109.47310 * 2 1 4 4 H 1.09001 * 109.46924 * 304.99637 * 3 2 1 5 5 C 1.52998 * 109.47229 * 65.00206 * 3 2 1 6 6 C 1.50700 * 109.47327 * 185.00199 * 3 2 1 7 7 O 1.21285 * 119.99868 * 298.79212 * 6 3 2 8 8 N 1.34775 * 120.00627 * 118.78919 * 6 3 2 9 9 C 1.45105 * 116.62233 * 172.99174 * 8 6 3 10 10 C 1.53038 * 110.41879 * 153.04527 * 9 8 6 11 11 C 1.53312 * 107.66238 * 52.04631 * 10 9 8 12 12 C 1.51363 * 108.73729 * 291.40413 * 11 10 9 13 13 H 1.09007 * 109.24162 * 178.30750 * 12 11 10 14 14 C 1.54055 * 110.40247 * 299.74056 * 12 11 10 15 15 N 1.47381 * 106.11647 * 150.17314 * 14 12 11 16 16 C 1.46904 * 111.00679 * 219.21842 * 15 14 12 17 17 C 1.50693 * 109.47656 * 191.39487 * 16 15 14 18 18 O 1.21295 * 120.00044 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00251 * 179.97438 * 17 16 15 20 20 C 1.37095 * 120.00096 * 180.02562 * 19 17 16 21 21 H 1.08005 * 120.00160 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00015 * 180.02562 * 20 19 17 23 23 N 1.31419 * 120.00276 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00083 * 359.97438 * 22 20 19 25 25 H 1.48506 * 109.46850 * 270.00220 * 24 22 20 26 26 H 1.48496 * 109.46995 * 30.00220 * 24 22 20 27 27 H 1.48499 * 109.47436 * 150.00404 * 24 22 20 28 28 C 1.47239 * 109.09914 * 341.84345 * 15 14 12 29 29 C 1.44280 * 116.61467 * 353.01615 * 8 6 3 30 30 H 1.08997 * 109.30647 * 70.98802 * 29 8 6 31 31 H 1.09005 * 109.47040 * 300.00152 * 1 2 3 32 32 H 1.09000 * 109.47233 * 59.99893 * 1 2 3 33 33 H 1.09000 * 109.47587 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47040 * 239.99848 * 2 1 3 35 35 H 1.09000 * 109.47233 * 120.00107 * 2 1 3 36 36 H 1.08996 * 109.47367 * 75.21182 * 5 3 2 37 37 H 1.09004 * 109.46986 * 195.22005 * 5 3 2 38 38 H 1.08999 * 109.46854 * 315.20985 * 5 3 2 39 39 H 1.09006 * 109.31310 * 273.33333 * 9 8 6 40 40 H 1.08994 * 109.31579 * 32.75441 * 9 8 6 41 41 H 1.08995 * 109.82381 * 171.58816 * 10 9 8 42 42 H 1.09005 * 109.82148 * 292.50906 * 10 9 8 43 43 H 1.08999 * 109.52327 * 51.49551 * 11 10 9 44 44 H 1.09008 * 109.52152 * 171.61082 * 11 10 9 45 45 H 1.09004 * 110.12389 * 31.01066 * 14 12 11 46 46 H 1.09005 * 110.12941 * 269.33774 * 14 12 11 47 47 H 1.08998 * 109.46772 * 71.38921 * 16 15 14 48 48 H 1.09010 * 109.46338 * 311.39764 * 16 15 14 49 49 H 0.96996 * 119.99771 * 0.02562 * 19 17 16 50 50 H 0.97000 * 120.00075 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.84475 * 119.73335 * 28 15 14 52 52 H 1.08997 * 109.84247 * 240.64257 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9814 -0.8419 5 6 1.6353 2.1265 1.3073 6 6 3.5419 1.4442 -0.1239 7 8 4.2213 0.9125 0.7286 8 7 4.1302 2.0366 -1.1819 9 6 5.5776 2.1338 -1.1509 10 6 6.1403 2.1789 -2.5734 11 6 5.4007 3.2876 -3.3312 12 6 3.9630 2.8608 -3.5359 13 1 3.4215 3.6564 -4.0479 14 6 3.9009 1.5587 -4.3569 15 7 2.6850 0.8534 -3.9140 16 6 2.9187 -0.5942 -3.8254 17 6 1.6024 -1.3057 -3.6463 18 8 0.5710 -0.6694 -3.5969 19 7 1.5712 -2.6490 -3.5412 20 6 0.3737 -3.2962 -3.3788 21 1 -0.5448 -2.7297 -3.3348 22 6 0.3416 -4.6810 -3.2698 23 7 -0.8064 -5.3015 -3.1137 24 14 1.9302 -5.6609 -3.3453 25 1 2.2195 -6.0269 -4.7552 26 1 3.0445 -4.8393 -2.8084 27 1 1.7893 -6.8957 -2.5324 28 6 2.2575 1.3992 -2.6150 29 6 3.2552 2.5087 -2.2275 30 1 2.7042 3.3788 -1.8707 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 2.2709 1.7679 2.1169 37 1 1.7520 3.2053 1.2042 38 1 0.5945 1.8936 1.5322 39 1 5.8668 3.0409 -0.6200 40 1 5.9860 1.2684 -0.6290 41 1 7.2070 2.4009 -2.5421 42 1 5.9757 1.2209 -3.0666 43 1 5.4347 4.2101 -2.7518 44 1 5.8767 3.4475 -4.2987 45 1 4.7819 0.9481 -4.1588 46 1 3.8347 1.7886 -5.4204 47 1 3.5652 -0.8064 -2.9739 48 1 3.3980 -0.9415 -4.7409 49 1 2.3961 -3.1577 -3.5803 50 1 -0.8288 -6.2683 -3.0380 51 1 1.2545 1.8171 -2.7013 52 1 2.2664 0.6115 -1.8617 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484469271.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:00 Heat of formation + Delta-G solvation = -64.569818 kcal Electronic energy + Delta-G solvation = -32664.654392 eV Core-core repulsion = 28663.922316 eV Total energy + Delta-G solvation = -4000.732075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.67609 -40.42133 -39.62471 -37.47318 -36.42810 -35.84143 -34.66100 -33.72718 -32.68901 -30.66325 -29.08952 -28.93921 -27.11721 -26.31690 -25.05067 -23.95699 -23.11376 -22.02736 -21.21568 -20.75473 -20.15219 -19.29791 -18.46582 -17.78159 -17.31163 -16.97733 -16.72844 -16.49321 -16.32069 -15.97170 -15.75246 -15.40082 -15.25670 -14.82831 -14.67327 -14.58469 -14.34492 -14.19309 -14.06596 -13.97473 -13.66162 -13.36647 -13.27276 -13.06734 -12.98191 -12.75868 -12.68824 -12.57916 -12.42721 -12.36046 -12.09867 -12.00990 -11.74111 -11.71052 -11.63421 -11.48950 -11.46818 -11.34621 -10.74499 -10.34546 -10.21083 -9.82687 -9.09348 -8.39791 -5.98280 1.27046 1.31010 1.39112 1.41756 1.93558 1.97299 2.20774 2.64232 3.11510 3.17483 3.31347 3.43221 3.53122 3.68664 3.81106 3.87461 3.96259 4.00847 4.10765 4.19386 4.24424 4.32036 4.36769 4.40024 4.42601 4.46060 4.49533 4.52135 4.55882 4.69086 4.78427 4.82940 4.89325 4.91599 4.92766 4.97253 5.00793 5.03100 5.14007 5.16706 5.23002 5.26857 5.37081 5.38550 5.53831 5.64437 5.88916 5.99344 6.10876 6.18585 6.61337 6.91112 7.05087 7.42047 7.98063 8.77612 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012088 B = 0.004375 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2315.704418 B = 6398.529742 C = 7316.643902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 C -0.118 4.118 4 H 0.109 0.891 5 C -0.137 4.137 6 C 0.509 3.491 7 O -0.576 6.576 8 N -0.592 5.592 9 C 0.111 3.889 10 C -0.132 4.132 11 C -0.103 4.103 12 C -0.090 4.090 13 H 0.112 0.888 14 C 0.041 3.959 15 N -0.521 5.521 16 C 0.051 3.949 17 C 0.455 3.545 18 O -0.589 6.589 19 N -0.598 5.598 20 C -0.315 4.315 21 H 0.062 0.938 22 C -0.011 4.011 23 N -0.933 5.933 24 Si 0.953 3.047 25 H -0.255 1.255 26 H -0.242 1.242 27 H -0.276 1.276 28 C 0.018 3.982 29 C 0.127 3.873 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.035 0.965 34 H 0.040 0.960 35 H 0.060 0.940 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.102 0.898 42 H 0.064 0.936 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.061 0.939 46 H 0.095 0.905 47 H 0.053 0.947 48 H 0.116 0.884 49 H 0.384 0.616 50 H 0.277 0.723 51 H 0.078 0.922 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.865 19.496 1.083 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.140 4.140 3 C -0.139 4.139 4 H 0.127 0.873 5 C -0.195 4.195 6 C 0.298 3.702 7 O -0.455 6.455 8 N -0.324 5.324 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.141 4.141 12 C -0.109 4.109 13 H 0.130 0.870 14 C -0.085 4.085 15 N -0.245 5.245 16 C -0.081 4.081 17 C 0.242 3.758 18 O -0.471 6.471 19 N -0.240 5.240 20 C -0.444 4.444 21 H 0.080 0.920 22 C -0.210 4.210 23 N -0.574 5.574 24 Si 0.774 3.226 25 H -0.180 1.180 26 H -0.166 1.166 27 H -0.201 1.201 28 C -0.110 4.110 29 C 0.022 3.978 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.083 0.917 43 H 0.100 0.900 44 H 0.114 0.886 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.071 0.929 48 H 0.134 0.866 49 H 0.218 0.782 50 H 0.087 0.913 51 H 0.096 0.904 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 16.053 19.587 1.153 25.351 hybrid contribution 0.654 -1.701 0.627 1.928 sum 16.707 17.886 1.780 24.539 Atomic orbital electron populations 1.21664 0.94234 1.01295 1.02362 1.21387 0.97161 0.94732 1.00732 1.21763 0.90969 0.98405 1.02783 0.87324 1.21795 1.02819 1.00598 0.94248 1.21097 0.91309 0.76630 0.81189 1.90631 1.66540 1.45642 1.42720 1.47194 1.07343 1.58676 1.19219 1.21291 0.78524 1.02107 0.99201 1.22026 1.01419 1.00182 0.93355 1.21207 0.92465 0.98207 1.02219 1.21639 0.98361 0.98375 0.92562 0.86965 1.23205 0.90373 0.93972 1.00985 1.62853 1.32540 1.01141 1.28004 1.21987 0.93274 0.89944 1.02893 1.20662 0.91805 0.81941 0.81344 1.90533 1.36365 1.66124 1.54125 1.42089 1.07868 1.06489 1.67556 1.18956 0.86219 0.90764 1.48456 0.92005 1.25932 1.01379 0.97094 0.96583 1.69788 1.27300 1.10126 1.50224 0.85529 0.78508 0.78787 0.79766 1.17964 1.16565 1.20122 1.24037 0.98762 0.97504 0.90651 1.21509 0.90597 0.96723 0.88928 0.88390 0.89917 0.93146 0.94626 0.94168 0.92134 0.92945 0.90596 0.89910 0.91008 0.92110 0.87960 0.91740 0.89992 0.88625 0.92128 0.88647 0.92878 0.86602 0.78159 0.91338 0.90370 0.91197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.58 9.70 71.98 0.70 -3.88 16 2 C -0.10 -3.41 4.79 30.59 0.15 -3.26 16 3 C -0.12 -3.18 1.63 -11.54 -0.02 -3.20 16 4 H 0.11 2.73 4.19 -2.39 -0.01 2.72 16 5 C -0.14 -3.05 9.26 71.98 0.67 -2.38 16 6 C 0.51 14.72 5.64 87.66 0.49 15.21 16 7 O -0.58 -20.54 15.79 -3.04 -0.05 -20.58 16 8 N -0.59 -13.44 3.06 -804.35 -2.46 -15.90 16 9 C 0.11 2.11 6.00 86.65 0.52 2.63 16 10 C -0.13 -1.68 6.03 30.71 0.19 -1.49 16 11 C -0.10 -1.02 5.46 30.16 0.16 -0.85 16 12 C -0.09 -1.32 3.15 -11.02 -0.03 -1.35 16 13 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 14 C 0.04 0.78 6.12 86.57 0.53 1.31 16 15 N -0.52 -15.03 4.82 -894.00 -4.31 -19.34 16 16 C 0.05 1.64 4.98 85.55 0.43 2.07 16 17 C 0.46 20.51 7.34 87.66 0.64 21.16 16 18 O -0.59 -31.11 15.12 -3.07 -0.05 -31.16 16 19 N -0.60 -28.66 5.09 -306.99 -1.56 -30.23 16 20 C -0.31 -18.36 10.16 84.04 0.85 -17.51 16 21 H 0.06 4.25 7.39 -2.91 -0.02 4.23 16 22 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 23 N -0.93 -56.56 13.96 21.66 0.30 -56.26 16 24 Si 0.95 40.21 27.74 68.60 1.90 42.11 16 25 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 26 H -0.24 -8.98 6.52 99.48 0.65 -8.33 16 27 H -0.28 -11.60 7.11 99.48 0.71 -10.90 16 28 C 0.02 0.52 3.43 86.63 0.30 0.81 16 29 C 0.13 2.54 2.75 45.75 0.13 2.67 16 30 H 0.10 1.65 7.80 -2.39 -0.02 1.63 16 31 H 0.08 2.16 6.29 -2.38 -0.02 2.15 16 32 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.04 1.57 6.12 -2.38 -0.01 1.56 16 35 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 36 H 0.05 1.30 7.71 -2.39 -0.02 1.28 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.66 6.02 -2.39 -0.01 1.65 16 39 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 40 H 0.06 1.46 7.12 -2.39 -0.02 1.44 16 41 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.06 0.98 5.73 -2.38 -0.01 0.97 16 43 H 0.08 0.69 8.10 -2.39 -0.02 0.67 16 44 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 45 H 0.06 1.08 5.16 -2.38 -0.01 1.07 16 46 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 47 H 0.05 1.66 7.96 -2.39 -0.02 1.64 16 48 H 0.12 3.13 8.06 -2.38 -0.02 3.11 16 49 H 0.38 15.87 5.76 -92.71 -0.53 15.34 16 50 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.08 2.45 7.75 -2.39 -0.02 2.43 16 52 H 0.07 2.30 1.70 -2.39 0.00 2.29 16 Total: -1.00 -77.67 382.70 0.29 -77.38 By element: Atomic # 1 Polarization: 41.85 SS G_CDS: 0.35 Total: 42.20 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: 6.17 Total: 11.77 kcal Atomic # 7 Polarization: -113.70 SS G_CDS: -8.03 Total: -121.73 kcal Atomic # 8 Polarization: -51.65 SS G_CDS: -0.09 Total: -51.74 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.90 Total: 42.11 kcal Total: -77.67 0.29 -77.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484469271.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.813 kcal (2) G-P(sol) polarization free energy of solvation -77.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds