Wall clock time and date at job start Tue Mar 31 2020 20:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 H 1.08994 * 109.47205 * 54.99689 * 3 2 1 5 5 C 1.52995 * 109.46907 * 294.99674 * 3 2 1 6 6 C 1.50697 * 109.46765 * 174.99772 * 3 2 1 7 7 O 1.21279 * 120.00389 * 17.17794 * 6 3 2 8 8 N 1.34776 * 119.99780 * 197.17025 * 6 3 2 9 9 C 1.45110 * 116.64346 * 354.95426 * 8 6 3 10 10 C 1.53015 * 110.48577 * 152.69371 * 9 8 6 11 11 C 1.54425 * 107.51570 * 52.05768 * 10 9 8 12 12 C 1.52134 * 108.50828 * 291.17771 * 11 10 9 13 13 H 1.09005 * 109.75962 * 178.63464 * 12 11 10 14 14 C 1.53777 * 110.18558 * 299.61706 * 12 11 10 15 15 N 1.47280 * 107.41202 * 138.68486 * 14 12 11 16 16 C 1.46901 * 111.00185 * 123.18132 * 15 14 12 17 17 C 1.50693 * 109.47377 * 170.00492 * 16 15 14 18 18 O 1.21297 * 120.00076 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00294 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00113 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00479 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99859 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00041 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47108 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47640 * 300.00485 * 24 22 20 27 27 H 1.48503 * 109.46939 * 60.00882 * 24 22 20 28 28 C 1.47338 * 109.08616 * 0.56771 * 15 14 12 29 29 C 1.44273 * 116.63926 * 174.92695 * 8 6 3 30 30 H 1.08997 * 109.61235 * 70.81484 * 29 8 6 31 31 H 1.08997 * 109.46986 * 59.99871 * 1 2 3 32 32 H 1.08999 * 109.46899 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46820 * 300.00214 * 1 2 3 34 34 H 1.08996 * 109.46937 * 239.99243 * 2 1 3 35 35 H 1.09000 * 109.46698 * 119.99688 * 2 1 3 36 36 H 1.09004 * 109.47628 * 306.43952 * 5 3 2 37 37 H 1.09007 * 109.46902 * 66.43818 * 5 3 2 38 38 H 1.09000 * 109.47332 * 186.43527 * 5 3 2 39 39 H 1.08999 * 109.30469 * 273.01116 * 9 8 6 40 40 H 1.09004 * 109.29911 * 32.38914 * 9 8 6 41 41 H 1.08998 * 109.80821 * 171.36693 * 10 9 8 42 42 H 1.08998 * 109.80844 * 292.25580 * 10 9 8 43 43 H 1.08994 * 109.30780 * 171.77719 * 11 10 9 44 44 H 1.09004 * 110.34999 * 51.18837 * 11 10 9 45 45 H 1.09005 * 109.85792 * 19.23173 * 14 12 11 46 46 H 1.08996 * 109.97088 * 258.20478 * 14 12 11 47 47 H 1.08996 * 109.46997 * 50.00004 * 16 15 14 48 48 H 1.09002 * 109.47161 * 290.00343 * 16 15 14 49 49 H 0.96996 * 119.99652 * 359.97438 * 19 17 16 50 50 H 0.96992 * 119.99701 * 359.97438 * 23 22 20 51 51 H 1.08994 * 110.10558 * 100.79742 * 28 15 14 52 52 H 1.08999 * 110.10201 * 222.42304 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1706 0.4329 -0.1061 8 7 4.1866 2.5697 0.4901 9 6 3.3768 3.7648 0.6375 10 6 4.0138 4.7223 1.6468 11 6 5.4823 4.9375 1.2204 12 6 6.2439 3.6387 1.4387 13 1 7.2794 3.7608 1.1210 14 6 6.1992 3.2404 2.9233 15 7 5.9826 1.7848 2.9828 16 6 7.0521 1.1240 3.7428 17 6 6.6761 -0.3136 3.9929 18 8 5.6208 -0.7453 3.5792 19 7 7.5120 -1.1196 4.6771 20 6 7.1697 -2.4274 4.9050 21 1 6.2304 -2.8120 4.5360 22 6 8.0318 -3.2585 5.6100 23 7 9.1750 -2.7906 6.0586 24 14 7.5651 -5.0402 5.9213 25 1 8.6462 -5.7081 6.6898 26 1 6.3009 -5.0924 6.6986 27 1 7.3772 -5.7367 4.6232 28 6 5.9036 1.2530 1.6110 29 6 5.6105 2.4619 0.6959 30 1 6.1093 2.3236 -0.2634 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9728 1.5252 -2.1517 37 1 0.5506 2.2276 -1.3438 38 1 2.0942 3.1139 -1.3581 39 1 3.2914 4.2635 -0.3280 40 1 2.3819 3.4854 0.9844 41 1 3.4847 5.6752 1.6368 42 1 3.9733 4.2869 2.6453 43 1 5.9231 5.7254 1.8310 44 1 5.5344 5.2180 0.1684 45 1 5.3786 3.7575 3.4208 46 1 7.1432 3.4943 3.4054 47 1 7.1895 1.6348 4.6958 48 1 7.9803 1.1629 3.1726 49 1 8.3558 -0.7743 5.0082 50 1 9.4171 -1.8654 5.8973 51 1 6.8517 0.7932 1.3323 52 1 5.0969 0.5236 1.5379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484469274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:04 Heat of formation + Delta-G solvation = -58.535042 kcal Electronic energy + Delta-G solvation = -31427.911258 eV Core-core repulsion = 27427.440870 eV Total energy + Delta-G solvation = -4000.470388 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.30687 -39.00721 -37.99503 -36.09587 -35.45056 -34.14494 -33.40075 -31.65018 -30.89140 -29.81737 -27.93623 -27.23799 -25.60051 -24.80166 -23.95370 -23.01465 -22.20475 -20.86972 -19.54560 -19.35374 -18.61195 -17.80164 -17.22619 -16.52436 -16.05753 -15.88210 -15.41090 -14.97300 -14.84103 -14.51560 -14.43379 -14.39379 -14.04546 -13.69788 -13.54845 -13.46184 -13.19753 -12.89198 -12.71617 -12.42756 -12.25715 -12.20855 -11.99267 -11.81183 -11.67422 -11.51066 -11.31169 -11.12444 -11.05914 -10.94076 -10.88233 -10.82665 -10.75302 -10.68399 -10.61979 -10.14664 -9.77135 -9.44393 -9.32728 -8.54046 -8.37526 -7.93477 -7.76622 -6.66400 -3.78447 2.72407 2.99524 3.38082 3.40440 3.60980 3.95897 4.08236 4.22021 4.36893 4.40989 4.49196 4.58787 4.65818 4.69901 4.81336 4.87249 4.99555 5.06411 5.16880 5.24750 5.26594 5.29809 5.34574 5.36737 5.40528 5.44722 5.52237 5.56574 5.61206 5.63141 5.70203 5.72892 5.76904 5.79189 5.83859 5.87606 5.90074 6.01496 6.04576 6.14224 6.17376 6.18793 6.34913 6.57309 6.91392 7.28642 7.35359 7.39032 7.91097 8.17889 8.30220 8.70916 8.92031 9.58230 10.01050 10.77456 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.003387 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.811295 B = 8264.173266 C =10147.047683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.109 4.109 3 C -0.110 4.110 4 H 0.094 0.906 5 C -0.145 4.145 6 C 0.510 3.490 7 O -0.521 6.521 8 N -0.592 5.592 9 C 0.112 3.888 10 C -0.139 4.139 11 C -0.107 4.107 12 C -0.112 4.112 13 H 0.084 0.916 14 C 0.043 3.957 15 N -0.505 5.505 16 C 0.041 3.959 17 C 0.448 3.552 18 O -0.564 6.564 19 N -0.581 5.581 20 C -0.378 4.378 21 H 0.098 0.902 22 C -0.011 4.011 23 N -0.905 5.905 24 Si 1.091 2.909 25 H -0.280 1.280 26 H -0.284 1.284 27 H -0.284 1.284 28 C 0.039 3.961 29 C 0.149 3.851 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.059 0.941 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.083 0.917 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.081 0.919 46 H 0.054 0.946 47 H 0.085 0.915 48 H 0.046 0.954 49 H 0.374 0.626 50 H 0.260 0.740 51 H 0.045 0.955 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.548 19.272 -12.433 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.146 4.146 3 C -0.132 4.132 4 H 0.112 0.888 5 C -0.202 4.202 6 C 0.298 3.702 7 O -0.397 6.397 8 N -0.326 5.326 9 C -0.011 4.011 10 C -0.176 4.176 11 C -0.145 4.145 12 C -0.132 4.132 13 H 0.102 0.898 14 C -0.085 4.085 15 N -0.229 5.229 16 C -0.090 4.090 17 C 0.233 3.767 18 O -0.446 6.446 19 N -0.220 5.220 20 C -0.507 4.507 21 H 0.116 0.884 22 C -0.213 4.213 23 N -0.545 5.545 24 Si 0.917 3.083 25 H -0.205 1.205 26 H -0.211 1.211 27 H -0.211 1.211 28 C -0.088 4.088 29 C 0.044 3.956 30 H 0.090 0.910 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.099 0.901 41 H 0.096 0.904 42 H 0.102 0.898 43 H 0.088 0.912 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.072 0.928 47 H 0.104 0.896 48 H 0.064 0.936 49 H 0.207 0.793 50 H 0.071 0.929 51 H 0.064 0.936 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.838 16.918 -11.852 23.808 hybrid contribution 0.979 2.013 -0.799 2.377 sum -10.859 18.930 -12.651 25.225 Atomic orbital electron populations 1.21815 0.95613 1.01886 1.01506 1.21380 0.95223 0.94139 1.03908 1.21387 0.92156 0.99474 1.00140 0.88818 1.21847 1.01953 1.00370 0.96032 1.20747 0.90193 0.82844 0.76447 1.90705 1.68393 1.32575 1.47986 1.46840 1.07216 1.09768 1.68735 1.21408 0.94704 0.86035 0.98970 1.22200 0.95969 0.99267 1.00199 1.21495 0.95198 0.96204 1.01605 1.21907 0.99927 0.94776 0.96542 0.89788 1.22994 1.00982 0.89780 0.94724 1.63003 1.43700 1.01518 1.14647 1.22123 0.92499 0.95597 0.98814 1.19687 0.86270 0.86746 0.84000 1.90541 1.24393 1.75814 1.53881 1.41920 1.18906 1.11025 1.50119 1.20519 1.07651 0.86164 1.36379 0.88430 1.26467 0.93521 1.06694 0.94629 1.70898 1.21959 1.16956 1.44698 0.83143 0.75669 0.72707 0.76793 1.20479 1.21060 1.21057 1.23550 1.03487 0.96886 0.84914 1.21019 0.80547 0.95537 0.98466 0.91043 0.92720 0.92469 0.92790 0.91094 0.90922 0.92011 0.91339 0.92204 0.92213 0.90143 0.90429 0.89842 0.91155 0.91454 0.90149 0.92783 0.89629 0.93622 0.79336 0.92880 0.93619 0.85903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.67 37.16 0.36 -1.03 16 2 C -0.11 -1.32 4.75 -26.73 -0.13 -1.45 16 3 C -0.11 -1.21 1.88 -91.78 -0.17 -1.38 16 4 H 0.09 0.91 6.38 -51.93 -0.33 0.57 16 5 C -0.14 -1.17 8.60 37.15 0.32 -0.85 16 6 C 0.51 7.50 6.08 -10.99 -0.07 7.43 16 7 O -0.52 -10.03 13.45 5.56 0.07 -9.95 16 8 N -0.59 -7.46 3.04 -168.00 -0.51 -7.97 16 9 C 0.11 0.96 4.88 -4.78 -0.02 0.94 16 10 C -0.14 -1.07 6.03 -25.98 -0.16 -1.23 16 11 C -0.11 -0.85 5.47 -26.43 -0.14 -0.99 16 12 C -0.11 -1.22 3.14 -90.71 -0.28 -1.50 16 13 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 14 C 0.04 0.55 6.22 -3.21 -0.02 0.53 16 15 N -0.50 -8.99 4.85 -233.95 -1.13 -10.13 16 16 C 0.04 0.79 5.00 -4.98 -0.02 0.76 16 17 C 0.45 11.29 7.57 -10.99 -0.08 11.21 16 18 O -0.56 -16.43 14.67 5.54 0.08 -16.34 16 19 N -0.58 -15.40 5.28 -10.96 -0.06 -15.46 16 20 C -0.38 -11.12 9.68 -14.93 -0.14 -11.26 16 21 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 22 C -0.01 -0.32 5.50 -17.46 -0.10 -0.42 16 23 N -0.91 -26.25 13.68 55.50 0.76 -25.49 16 24 Si 1.09 25.32 29.92 -169.99 -5.09 20.24 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 C 0.04 0.73 4.68 -2.84 -0.01 0.71 16 29 C 0.15 2.07 3.17 -68.42 -0.22 1.85 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.05 0.42 6.71 -51.93 -0.35 0.07 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.92 8.07 -51.93 -0.42 0.50 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.44 6.89 -51.92 -0.36 0.08 16 38 H 0.06 0.42 5.96 -51.93 -0.31 0.11 16 39 H 0.06 0.42 7.06 -51.93 -0.37 0.05 16 40 H 0.08 0.62 5.59 -51.93 -0.29 0.33 16 41 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.08 0.79 5.90 -51.93 -0.31 0.48 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.07 0.49 8.12 -51.93 -0.42 0.07 16 45 H 0.08 0.98 5.69 -51.93 -0.30 0.68 16 46 H 0.05 0.63 7.54 -51.93 -0.39 0.24 16 47 H 0.09 1.45 8.03 -51.93 -0.42 1.04 16 48 H 0.05 0.80 7.87 -51.93 -0.41 0.39 16 49 H 0.37 9.15 6.73 -40.82 -0.27 8.87 16 50 H 0.26 7.26 6.77 -40.82 -0.28 6.98 16 51 H 0.05 0.90 7.55 -51.93 -0.39 0.51 16 52 H 0.12 2.81 4.58 -51.93 -0.24 2.57 16 LS Contribution 386.30 15.07 5.82 5.82 Total: -1.00 -36.31 386.30 -9.35 -45.65 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -8.40 Total: 10.30 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: -0.90 Total: 3.33 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.94 Total: -59.04 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: 0.16 Total: -26.30 kcal Atomic # 14 Polarization: 25.32 SS G_CDS: -5.09 Total: 20.24 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.31 -9.35 -45.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484469274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.884 kcal (2) G-P(sol) polarization free energy of solvation -36.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds