Wall clock time and date at job start Tue Mar 31 2020 20:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47112 * 2 1 4 4 H 1.08994 * 109.47205 * 54.99689 * 3 2 1 5 5 C 1.52995 * 109.46907 * 294.99674 * 3 2 1 6 6 C 1.50697 * 109.46765 * 174.99772 * 3 2 1 7 7 O 1.21279 * 120.00389 * 17.17794 * 6 3 2 8 8 N 1.34776 * 119.99780 * 197.17025 * 6 3 2 9 9 C 1.45110 * 116.64346 * 354.95426 * 8 6 3 10 10 C 1.53015 * 110.48577 * 152.69371 * 9 8 6 11 11 C 1.54425 * 107.51570 * 52.05768 * 10 9 8 12 12 C 1.52134 * 108.50828 * 291.17771 * 11 10 9 13 13 H 1.09005 * 109.75962 * 178.63464 * 12 11 10 14 14 C 1.53777 * 110.18558 * 299.61706 * 12 11 10 15 15 N 1.47280 * 107.41202 * 138.68486 * 14 12 11 16 16 C 1.46901 * 111.00185 * 123.18132 * 15 14 12 17 17 C 1.50693 * 109.47377 * 170.00492 * 16 15 14 18 18 O 1.21297 * 120.00076 * 359.97438 * 17 16 15 19 19 N 1.34777 * 120.00294 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00113 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00479 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99859 * 179.97438 * 20 19 17 23 23 N 1.31417 * 120.00041 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99989 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47108 * 180.02562 * 24 22 20 26 26 H 1.48497 * 109.47640 * 300.00485 * 24 22 20 27 27 H 1.48503 * 109.46939 * 60.00882 * 24 22 20 28 28 C 1.47338 * 109.08616 * 0.56771 * 15 14 12 29 29 C 1.44273 * 116.63926 * 174.92695 * 8 6 3 30 30 H 1.08997 * 109.61235 * 70.81484 * 29 8 6 31 31 H 1.08997 * 109.46986 * 59.99871 * 1 2 3 32 32 H 1.08999 * 109.46899 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46820 * 300.00214 * 1 2 3 34 34 H 1.08996 * 109.46937 * 239.99243 * 2 1 3 35 35 H 1.09000 * 109.46698 * 119.99688 * 2 1 3 36 36 H 1.09004 * 109.47628 * 306.43952 * 5 3 2 37 37 H 1.09007 * 109.46902 * 66.43818 * 5 3 2 38 38 H 1.09000 * 109.47332 * 186.43527 * 5 3 2 39 39 H 1.08999 * 109.30469 * 273.01116 * 9 8 6 40 40 H 1.09004 * 109.29911 * 32.38914 * 9 8 6 41 41 H 1.08998 * 109.80821 * 171.36693 * 10 9 8 42 42 H 1.08998 * 109.80844 * 292.25580 * 10 9 8 43 43 H 1.08994 * 109.30780 * 171.77719 * 11 10 9 44 44 H 1.09004 * 110.34999 * 51.18837 * 11 10 9 45 45 H 1.09005 * 109.85792 * 19.23173 * 14 12 11 46 46 H 1.08996 * 109.97088 * 258.20478 * 14 12 11 47 47 H 1.08996 * 109.46997 * 50.00004 * 16 15 14 48 48 H 1.09002 * 109.47161 * 290.00343 * 16 15 14 49 49 H 0.96996 * 119.99652 * 359.97438 * 19 17 16 50 50 H 0.96992 * 119.99701 * 359.97438 * 23 22 20 51 51 H 1.08994 * 110.10558 * 100.79742 * 28 15 14 52 52 H 1.08999 * 110.10201 * 222.42304 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9815 0.8417 5 6 1.6354 2.1264 -1.3074 6 6 3.5419 1.4442 0.1239 7 8 4.1706 0.4329 -0.1061 8 7 4.1866 2.5697 0.4901 9 6 3.3768 3.7648 0.6375 10 6 4.0138 4.7223 1.6468 11 6 5.4823 4.9375 1.2204 12 6 6.2439 3.6387 1.4387 13 1 7.2794 3.7608 1.1210 14 6 6.1992 3.2404 2.9233 15 7 5.9826 1.7848 2.9828 16 6 7.0521 1.1240 3.7428 17 6 6.6761 -0.3136 3.9929 18 8 5.6208 -0.7453 3.5792 19 7 7.5120 -1.1196 4.6771 20 6 7.1697 -2.4274 4.9050 21 1 6.2304 -2.8120 4.5360 22 6 8.0318 -3.2585 5.6100 23 7 9.1750 -2.7906 6.0586 24 14 7.5651 -5.0402 5.9213 25 1 8.6462 -5.7081 6.6898 26 1 6.3009 -5.0924 6.6986 27 1 7.3772 -5.7367 4.6232 28 6 5.9036 1.2530 1.6110 29 6 5.6105 2.4619 0.6959 30 1 6.1093 2.3236 -0.2634 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.9728 1.5252 -2.1517 37 1 0.5506 2.2276 -1.3438 38 1 2.0942 3.1139 -1.3581 39 1 3.2914 4.2635 -0.3280 40 1 2.3819 3.4854 0.9844 41 1 3.4847 5.6752 1.6368 42 1 3.9733 4.2869 2.6453 43 1 5.9231 5.7254 1.8310 44 1 5.5344 5.2180 0.1684 45 1 5.3786 3.7575 3.4208 46 1 7.1432 3.4943 3.4054 47 1 7.1895 1.6348 4.6958 48 1 7.9803 1.1629 3.1726 49 1 8.3558 -0.7743 5.0082 50 1 9.4171 -1.8654 5.8973 51 1 6.8517 0.7932 1.3323 52 1 5.0969 0.5236 1.5379 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484469274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:21:03 Heat of formation + Delta-G solvation = -85.808346 kcal Electronic energy + Delta-G solvation = -31429.093917 eV Core-core repulsion = 27427.440870 eV Total energy + Delta-G solvation = -4001.653047 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.37273 -40.53202 -39.58526 -37.29676 -36.51723 -36.21458 -34.37989 -33.26357 -32.58455 -30.66074 -29.03518 -28.71594 -26.55469 -26.27240 -25.33030 -23.88404 -23.39087 -22.07936 -21.39168 -20.32714 -19.99605 -19.57228 -18.30564 -18.06753 -17.41424 -17.15201 -16.76887 -16.27806 -16.10201 -15.91204 -15.59890 -15.52599 -15.44538 -15.09999 -14.82930 -14.41951 -14.26023 -14.18886 -13.92860 -13.52060 -13.46865 -13.39028 -13.22592 -13.01721 -12.86592 -12.66909 -12.59054 -12.44156 -12.36550 -12.18226 -11.94860 -11.92086 -11.79898 -11.66911 -11.65141 -11.58372 -11.52481 -11.45746 -10.48925 -10.37766 -10.13660 -9.59365 -9.19848 -8.97000 -6.09900 1.48907 1.49754 1.61952 1.78950 1.97828 2.03348 2.36338 2.71041 3.11372 3.18257 3.29350 3.52009 3.64090 3.72187 3.79489 3.95104 3.99166 4.03073 4.09369 4.16184 4.25640 4.29194 4.32243 4.39471 4.45036 4.49204 4.52788 4.56088 4.60152 4.70378 4.77993 4.80096 4.90640 4.94687 4.97093 5.01420 5.09251 5.14862 5.18551 5.21089 5.24448 5.34787 5.44422 5.46053 5.55068 5.75317 5.87597 5.94215 6.09467 6.37430 6.55167 6.73050 7.22795 7.40654 7.91831 8.51088 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.011923 B = 0.003387 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.811295 B = 8264.173266 C =10147.047683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.104 4.104 4 H 0.113 0.887 5 C -0.136 4.136 6 C 0.495 3.505 7 O -0.582 6.582 8 N -0.587 5.587 9 C 0.099 3.901 10 C -0.135 4.135 11 C -0.101 4.101 12 C -0.101 4.101 13 H 0.097 0.903 14 C 0.041 3.959 15 N -0.525 5.525 16 C 0.055 3.945 17 C 0.441 3.559 18 O -0.610 6.610 19 N -0.589 5.589 20 C -0.410 4.410 21 H 0.067 0.933 22 C -0.041 4.041 23 N -0.916 5.916 24 Si 1.133 2.867 25 H -0.267 1.267 26 H -0.272 1.272 27 H -0.276 1.276 28 C 0.043 3.957 29 C 0.155 3.845 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.027 0.973 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.091 0.909 41 H 0.112 0.888 42 H 0.064 0.936 43 H 0.093 0.907 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.073 0.927 47 H 0.115 0.885 48 H 0.064 0.936 49 H 0.384 0.616 50 H 0.259 0.741 51 H 0.017 0.983 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.455 23.103 -12.637 29.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C -0.125 4.125 4 H 0.131 0.869 5 C -0.193 4.193 6 C 0.284 3.716 7 O -0.463 6.463 8 N -0.319 5.319 9 C -0.022 4.022 10 C -0.173 4.173 11 C -0.139 4.139 12 C -0.121 4.121 13 H 0.115 0.885 14 C -0.086 4.086 15 N -0.250 5.250 16 C -0.077 4.077 17 C 0.229 3.771 18 O -0.495 6.495 19 N -0.229 5.229 20 C -0.540 4.540 21 H 0.085 0.915 22 C -0.239 4.239 23 N -0.555 5.555 24 Si 0.952 3.048 25 H -0.192 1.192 26 H -0.197 1.197 27 H -0.202 1.202 28 C -0.085 4.085 29 C 0.050 3.950 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.046 0.954 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.130 0.870 42 H 0.083 0.917 43 H 0.111 0.889 44 H 0.100 0.900 45 H 0.111 0.889 46 H 0.092 0.908 47 H 0.133 0.867 48 H 0.082 0.918 49 H 0.218 0.782 50 H 0.070 0.930 51 H 0.035 0.965 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.739 20.843 -12.045 27.236 hybrid contribution 1.258 0.833 -0.741 1.681 sum -11.482 21.676 -12.786 27.661 Atomic orbital electron populations 1.21769 0.92661 1.02350 1.03179 1.21343 0.97695 0.94833 1.00867 1.21428 0.89358 0.98920 1.02746 0.86926 1.21835 1.03744 1.00459 0.93308 1.21577 0.91857 0.82547 0.75588 1.90679 1.69865 1.34896 1.50812 1.46980 1.06897 1.10682 1.67357 1.21827 0.94580 0.84726 1.01051 1.22219 0.96246 1.00253 0.98546 1.21532 0.94771 0.94526 1.03037 1.21921 1.00939 0.94997 0.94244 0.88520 1.23145 1.02549 0.86218 0.96640 1.62873 1.43690 1.04445 1.13954 1.21999 0.93464 0.91406 1.00786 1.20898 0.85156 0.89081 0.81996 1.90522 1.26430 1.77390 1.55159 1.41961 1.19612 1.10536 1.50749 1.20483 1.07318 0.88069 1.38082 0.91495 1.27834 0.92717 1.09982 0.93379 1.70967 1.22285 1.17183 1.45050 0.82655 0.76234 0.68526 0.77354 1.19162 1.19741 1.20197 1.23265 1.00196 0.98171 0.86898 1.20873 0.81822 0.95003 0.97333 0.91810 0.90196 0.92761 0.91763 0.92921 0.95361 0.93349 0.88616 0.90367 0.89410 0.89074 0.86981 0.91725 0.88873 0.90038 0.88869 0.90828 0.86702 0.91776 0.78195 0.93050 0.96454 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.67 71.98 0.70 -1.83 16 2 C -0.11 -2.87 4.75 30.60 0.15 -2.72 16 3 C -0.10 -2.27 1.88 -11.54 -0.02 -2.29 16 4 H 0.11 2.01 6.38 -2.39 -0.02 2.00 16 5 C -0.14 -1.91 8.60 71.98 0.62 -1.29 16 6 C 0.49 15.33 6.08 87.66 0.53 15.86 16 7 O -0.58 -24.89 13.45 -3.03 -0.04 -24.93 16 8 N -0.59 -14.53 3.04 -803.82 -2.45 -16.98 16 9 C 0.10 1.38 4.88 86.64 0.42 1.81 16 10 C -0.14 -1.50 6.03 31.08 0.19 -1.31 16 11 C -0.10 -1.13 5.47 30.79 0.17 -0.96 16 12 C -0.10 -1.95 3.14 -10.85 -0.03 -1.98 16 13 H 0.10 1.65 8.14 -2.38 -0.02 1.63 16 14 C 0.04 0.96 6.22 86.49 0.54 1.50 16 15 N -0.53 -18.93 4.85 -894.07 -4.33 -23.26 16 16 C 0.05 2.10 5.00 85.55 0.43 2.53 16 17 C 0.44 23.32 7.57 87.65 0.66 23.98 16 18 O -0.61 -38.08 14.67 -3.08 -0.05 -38.12 16 19 N -0.59 -32.46 5.28 -306.99 -1.62 -34.08 16 20 C -0.41 -25.21 9.68 84.04 0.81 -24.39 16 21 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 22 C -0.04 -2.36 5.50 84.93 0.47 -1.90 16 23 N -0.92 -53.37 13.68 21.66 0.30 -53.07 16 24 Si 1.13 51.49 29.92 68.60 2.05 53.55 16 25 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 27 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.04 1.70 4.68 86.70 0.41 2.11 16 29 C 0.15 4.33 3.17 45.86 0.15 4.48 16 30 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.08 1.03 6.71 -2.39 -0.02 1.01 16 32 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.01 8.14 -2.39 -0.02 1.00 16 34 H 0.05 1.53 8.07 -2.39 -0.02 1.51 16 35 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.85 6.89 -2.38 -0.02 0.84 16 38 H 0.08 0.82 5.96 -2.39 -0.01 0.81 16 39 H 0.09 0.81 7.06 -2.39 -0.02 0.79 16 40 H 0.09 1.10 5.59 -2.39 -0.01 1.08 16 41 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 42 H 0.06 1.00 5.90 -2.39 -0.01 0.99 16 43 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 44 H 0.08 0.77 8.12 -2.38 -0.02 0.75 16 45 H 0.09 1.99 5.69 -2.38 -0.01 1.97 16 46 H 0.07 1.47 7.54 -2.39 -0.02 1.45 16 47 H 0.12 3.73 8.03 -2.39 -0.02 3.71 16 48 H 0.06 2.23 7.87 -2.39 -0.02 2.22 16 49 H 0.38 19.28 6.73 -92.71 -0.62 18.66 16 50 H 0.26 14.59 6.77 -92.71 -0.63 13.97 16 51 H 0.02 0.74 7.55 -2.39 -0.02 0.73 16 52 H 0.07 3.71 4.58 -2.39 -0.01 3.70 16 Total: -1.00 -88.13 386.30 0.49 -87.64 By element: Atomic # 1 Polarization: 35.22 SS G_CDS: 0.45 Total: 35.67 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: 6.18 Total: 13.59 kcal Atomic # 7 Polarization: -119.29 SS G_CDS: -8.11 Total: -127.39 kcal Atomic # 8 Polarization: -62.97 SS G_CDS: -0.09 Total: -63.06 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.05 Total: 53.55 kcal Total: -88.13 0.49 -87.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484469274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.831 kcal (2) G-P(sol) polarization free energy of solvation -88.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds