Wall clock time and date at job start Tue Mar 31 2020 20:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 H 1.09003 * 109.46770 * 306.35139 * 3 2 1 5 5 C 1.50702 * 109.46856 * 186.35508 * 3 2 1 6 6 O 1.21284 * 119.99825 * 254.80786 * 5 3 2 7 7 N 1.34778 * 120.00108 * 74.81262 * 5 3 2 8 8 C 1.47423 * 125.64813 * 4.61165 * 7 5 3 9 9 C 1.54908 * 104.83293 * 204.09018 * 8 7 5 10 10 C 1.55404 * 101.66546 * 323.07993 * 9 8 7 11 11 C 1.47023 * 125.64645 * 184.56962 * 7 5 3 12 12 H 1.08995 * 109.88100 * 59.40693 * 11 7 5 13 13 C 1.52998 * 109.88189 * 298.39215 * 11 7 5 14 14 N 1.46504 * 109.47004 * 173.83196 * 13 11 7 15 15 C 1.46501 * 119.99931 * 272.12543 * 14 13 11 16 16 C 1.36937 * 120.00203 * 92.12287 * 14 13 11 17 17 H 1.08002 * 119.99870 * 350.22479 * 16 14 13 18 18 C 1.38807 * 119.99960 * 170.50520 * 16 14 13 19 19 N 1.31616 * 120.00497 * 7.09992 * 18 16 14 20 20 Si 1.86800 * 119.99878 * 187.10046 * 18 16 14 21 21 H 1.48504 * 109.47063 * 60.00018 * 20 18 16 22 22 H 1.48501 * 109.47347 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47369 * 300.00130 * 20 18 16 24 24 N 1.46493 * 109.47509 * 66.35233 * 3 2 1 25 25 C 1.46761 * 124.35237 * 239.72278 * 24 3 2 26 26 C 1.54668 * 105.38411 * 162.85157 * 25 24 3 27 27 C 1.54628 * 101.68163 * 25.77268 * 26 25 24 28 28 C 1.34422 * 124.34981 * 60.02578 * 24 3 2 29 29 O 1.21282 * 124.94217 * 0.38765 * 28 24 3 30 30 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47619 * 300.00581 * 1 2 3 32 32 H 1.09000 * 109.47083 * 60.00326 * 1 2 3 33 33 H 1.09003 * 109.47167 * 239.99654 * 2 1 3 34 34 H 1.09006 * 109.46733 * 119.99966 * 2 1 3 35 35 H 1.08996 * 110.36854 * 322.93201 * 8 7 5 36 36 H 1.09008 * 110.36253 * 85.14491 * 8 7 5 37 37 H 1.09004 * 111.00130 * 81.06464 * 9 8 7 38 38 H 1.08992 * 111.00584 * 204.87647 * 9 8 7 39 39 H 1.09006 * 110.68940 * 277.04159 * 10 9 8 40 40 H 1.08999 * 110.85253 * 153.69873 * 10 9 8 41 41 H 1.09005 * 109.47578 * 53.83604 * 13 11 7 42 42 H 1.08997 * 109.47525 * 293.82844 * 13 11 7 43 43 H 1.09000 * 109.46874 * 243.86048 * 15 14 13 44 44 H 1.09003 * 109.47372 * 3.85338 * 15 14 13 45 45 H 1.08992 * 109.47387 * 123.85785 * 15 14 13 46 46 H 0.96996 * 120.00324 * 179.97438 * 19 18 16 47 47 H 1.08992 * 110.25269 * 281.98692 * 25 24 3 48 48 H 1.09006 * 110.24520 * 43.98576 * 25 24 3 49 49 H 1.08994 * 111.19505 * 267.59617 * 26 25 24 50 50 H 1.08997 * 110.81976 * 143.77562 * 26 25 24 51 51 H 1.08996 * 110.48648 * 216.30944 * 27 26 25 52 52 H 1.08996 * 110.60467 * 93.71599 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5867 1.9880 -0.8277 5 6 3.5388 1.4453 -0.1573 6 8 4.2482 1.6841 0.7970 7 7 4.0908 1.1826 -1.3584 8 6 3.3514 0.9719 -2.6163 9 6 4.3041 0.1283 -3.4997 10 6 5.6891 0.7284 -3.1302 11 6 5.5303 1.0595 -1.6313 12 1 5.9547 0.2575 -1.0275 13 6 6.2350 2.3795 -1.3125 14 7 7.6834 2.2044 -1.4459 15 6 8.4732 1.7384 -0.3034 16 6 8.2991 2.4762 -2.6385 17 1 7.7064 2.6659 -3.5212 18 6 9.6848 2.5023 -2.7142 19 7 10.4076 2.1301 -1.6791 20 14 10.5240 3.0655 -4.2851 21 1 10.1219 4.4627 -4.5876 22 1 11.9973 3.0019 -4.1096 23 1 10.1201 2.1803 -5.4069 24 7 1.6805 2.0876 1.2651 25 6 0.8426 3.2875 1.3741 26 6 0.3821 3.3339 2.8499 27 6 1.5160 2.5551 3.5562 28 6 2.0805 1.6599 2.4751 29 8 2.7903 0.6964 2.6716 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.4273 0.4260 -2.4263 36 1 3.1353 1.9277 -3.0938 37 1 4.2536 -0.9270 -3.2315 38 1 4.0847 0.2712 -4.5577 39 1 5.8831 1.6330 -3.7066 40 1 6.4821 -0.0040 -3.2814 41 1 5.9980 2.6809 -0.2921 42 1 5.8967 3.1489 -2.0065 43 1 9.1752 2.5171 -0.0052 44 1 7.8080 1.5106 0.5295 45 1 9.0241 0.8409 -0.5844 46 1 11.3759 2.1479 -1.7321 47 1 1.4233 4.1767 1.1292 48 1 -0.0206 3.2061 0.7133 49 1 -0.5762 2.8311 2.9797 50 1 0.3332 4.3621 3.2083 51 1 1.1157 1.9579 4.3754 52 1 2.2810 3.2395 3.9226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485079952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:41 Heat of formation + Delta-G solvation = -27.783843 kcal Electronic energy + Delta-G solvation = -31641.752097 eV Core-core repulsion = 27642.615181 eV Total energy + Delta-G solvation = -3999.136916 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -40.89776 -39.49469 -37.16679 -36.31476 -35.32272 -34.86850 -31.54988 -31.29186 -31.11845 -29.01744 -27.69311 -27.11723 -25.80569 -25.11998 -23.02255 -22.29785 -22.08595 -21.22116 -20.59525 -19.32169 -18.35627 -17.30277 -16.91121 -16.68393 -16.19079 -15.87834 -15.42970 -14.83923 -14.64604 -14.42501 -14.09416 -13.72741 -13.62496 -13.47718 -13.33756 -13.15245 -13.09413 -12.89795 -12.75625 -12.62805 -12.34834 -12.22083 -11.93853 -11.76884 -11.66475 -11.41098 -11.34385 -11.13978 -11.06481 -10.88503 -10.82716 -10.68843 -10.39116 -10.25703 -10.06982 -9.80798 -9.66192 -9.57985 -9.45031 -8.62771 -8.51487 -8.24875 -6.75936 -5.55288 -2.97782 2.60399 2.82603 2.90872 3.37759 3.42307 3.48120 3.49018 4.21766 4.25567 4.50379 4.56949 4.58851 4.70116 4.73113 4.77614 4.91380 4.98923 5.12256 5.14046 5.19899 5.27400 5.37359 5.44352 5.45251 5.50494 5.53198 5.61040 5.66256 5.70656 5.74303 5.76993 5.84667 5.85320 6.00199 6.05166 6.11387 6.36226 6.38394 6.49333 6.62164 6.71730 6.88728 7.02516 7.08781 7.12970 7.74553 7.84444 7.87130 8.06463 8.28844 8.47458 8.54408 9.36742 10.00600 10.46617 11.44288 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.003192 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.324321 B = 8769.021328 C = 9655.054588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.136 4.136 3 C 0.150 3.850 4 H 0.104 0.896 5 C 0.511 3.489 6 O -0.506 6.506 7 N -0.613 5.613 8 C 0.096 3.904 9 C -0.137 4.137 10 C -0.108 4.108 11 C 0.116 3.884 12 H 0.067 0.933 13 C 0.150 3.850 14 N -0.606 5.606 15 C 0.171 3.829 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.005 4.005 19 N -0.916 5.916 20 Si 0.904 3.096 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 N -0.610 5.610 25 C 0.104 3.896 26 C -0.129 4.129 27 C -0.155 4.155 28 C 0.524 3.476 29 O -0.505 6.505 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.079 0.921 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.051 0.949 42 H 0.041 0.959 43 H 0.042 0.958 44 H -0.007 1.007 45 H 0.038 0.962 46 H 0.249 0.751 47 H 0.071 0.929 48 H 0.077 0.923 49 H 0.081 0.919 50 H 0.089 0.911 51 H 0.098 0.902 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.336 -0.290 2.217 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C 0.043 3.957 4 H 0.122 0.878 5 C 0.296 3.704 6 O -0.380 6.380 7 N -0.349 5.349 8 C -0.028 4.028 9 C -0.175 4.175 10 C -0.146 4.146 11 C 0.011 3.989 12 H 0.085 0.915 13 C 0.021 3.979 14 N -0.329 5.329 15 C 0.026 3.974 16 C -0.372 4.372 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.563 5.563 20 Si 0.735 3.265 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.212 1.212 24 N -0.346 5.346 25 C -0.019 4.019 26 C -0.167 4.167 27 C -0.196 4.196 28 C 0.311 3.689 29 O -0.378 6.378 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.012 0.988 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.089 0.911 48 H 0.095 0.905 49 H 0.099 0.901 50 H 0.107 0.893 51 H 0.116 0.884 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -25.342 -0.693 2.921 25.519 hybrid contribution 0.573 0.342 -1.095 1.282 sum -24.768 -0.351 1.826 24.838 Atomic orbital electron populations 1.21705 0.94723 1.01931 1.01740 1.21876 0.96699 0.94402 1.04446 1.20784 0.92711 0.95536 0.86639 0.87786 1.20375 0.90092 0.77952 0.81990 1.90770 1.62667 1.46645 1.37877 1.48686 1.08440 1.70748 1.07013 1.22378 0.95488 0.99559 0.85339 1.22861 0.96128 0.99339 0.99187 1.22602 0.95574 1.01795 0.94629 1.22682 0.78294 1.01847 0.96065 0.91517 1.21012 0.84663 0.92763 0.99455 1.43982 1.00567 1.77684 1.10707 1.21012 0.91629 0.99212 0.85504 1.19244 0.89518 1.40984 0.87473 0.90954 1.24908 0.96448 1.01342 0.97418 1.70231 1.04621 1.52516 1.28956 0.86329 0.78659 0.78754 0.82769 1.21286 1.21716 1.21229 1.47944 1.52113 1.29172 1.05385 1.22119 0.94293 0.87737 0.97738 1.22588 0.98368 1.01818 0.93911 1.22325 0.99454 0.99659 0.98128 1.20685 0.79377 0.84774 0.84042 1.90736 1.35317 1.27945 1.83847 0.92330 0.92609 0.92688 0.90261 0.89668 0.91204 0.91570 0.91135 0.90313 0.90309 0.90044 0.93081 0.94034 0.93946 0.98801 0.94367 0.93993 0.91107 0.90477 0.90058 0.89259 0.88372 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.81 37.16 0.36 -0.75 16 2 C -0.14 -1.48 5.15 -26.73 -0.14 -1.62 16 3 C 0.15 1.81 1.92 -69.09 -0.13 1.68 16 4 H 0.10 0.95 7.71 -51.93 -0.40 0.55 16 5 C 0.51 8.66 6.79 -10.98 -0.07 8.59 16 6 O -0.51 -11.10 13.02 -15.12 -0.20 -11.30 16 7 N -0.61 -9.76 3.06 -163.02 -0.50 -10.26 16 8 C 0.10 1.09 6.41 -2.53 -0.02 1.07 16 9 C -0.14 -1.64 7.09 -24.45 -0.17 -1.81 16 10 C -0.11 -1.81 5.69 -24.76 -0.14 -1.95 16 11 C 0.12 2.25 3.13 -66.96 -0.21 2.04 16 12 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 13 C 0.15 3.41 5.11 -4.04 -0.02 3.39 16 14 N -0.61 -16.11 2.87 -181.12 -0.52 -16.63 16 15 C 0.17 4.71 8.99 59.85 0.54 5.25 16 16 C -0.24 -6.71 8.98 -15.06 -0.14 -6.85 16 17 H 0.07 1.89 6.81 -52.49 -0.36 1.53 16 18 C 0.00 -0.14 5.46 -17.43 -0.10 -0.24 16 19 N -0.92 -27.48 9.49 55.49 0.53 -26.95 16 20 Si 0.90 22.18 29.56 -169.99 -5.02 17.16 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 N -0.61 -7.16 2.24 -166.05 -0.37 -7.54 16 25 C 0.10 0.77 7.31 -3.02 -0.02 0.75 16 26 C -0.13 -0.75 7.19 -25.00 -0.18 -0.93 16 27 C -0.16 -1.45 6.86 -26.74 -0.18 -1.64 16 28 C 0.52 7.49 6.70 -10.86 -0.07 7.42 16 29 O -0.51 -9.75 14.84 -15.12 -0.22 -9.98 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 7.80 -51.93 -0.40 0.04 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.80 6.34 -51.93 -0.33 0.47 16 34 H 0.08 1.22 6.61 -51.93 -0.34 0.87 16 35 H 0.07 0.61 5.82 -51.93 -0.30 0.31 16 36 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 37 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.08 1.40 6.64 -51.93 -0.34 1.05 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.05 1.26 6.40 -51.93 -0.33 0.93 16 42 H 0.04 0.92 7.88 -51.93 -0.41 0.51 16 43 H 0.04 1.25 6.92 -51.93 -0.36 0.89 16 44 H -0.01 -0.18 7.85 -51.93 -0.41 -0.58 16 45 H 0.04 1.11 7.20 -51.93 -0.37 0.74 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.96 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 50 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 397.10 15.07 5.98 5.98 Total: -1.00 -36.70 397.10 -10.01 -46.71 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -9.00 Total: -1.60 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: -0.69 Total: 14.40 kcal Atomic # 7 Polarization: -60.51 SS G_CDS: -0.86 Total: -61.37 kcal Atomic # 8 Polarization: -20.85 SS G_CDS: -0.42 Total: -21.27 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.70 -10.01 -46.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485079952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.923 kcal (2) G-P(sol) polarization free energy of solvation -36.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds