Wall clock time and date at job start Tue Mar 31 2020 20:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47065 * 2 1 4 4 H 1.09003 * 109.46770 * 306.35139 * 3 2 1 5 5 C 1.50702 * 109.46856 * 186.35508 * 3 2 1 6 6 O 1.21284 * 119.99825 * 254.80786 * 5 3 2 7 7 N 1.34778 * 120.00108 * 74.81262 * 5 3 2 8 8 C 1.47423 * 125.64813 * 4.61165 * 7 5 3 9 9 C 1.54908 * 104.83293 * 204.09018 * 8 7 5 10 10 C 1.55404 * 101.66546 * 323.07993 * 9 8 7 11 11 C 1.47023 * 125.64645 * 184.56962 * 7 5 3 12 12 H 1.08995 * 109.88100 * 59.40693 * 11 7 5 13 13 C 1.52998 * 109.88189 * 298.39215 * 11 7 5 14 14 N 1.46504 * 109.47004 * 173.83196 * 13 11 7 15 15 C 1.46501 * 119.99931 * 272.12543 * 14 13 11 16 16 C 1.36937 * 120.00203 * 92.12287 * 14 13 11 17 17 H 1.08002 * 119.99870 * 350.22479 * 16 14 13 18 18 C 1.38807 * 119.99960 * 170.50520 * 16 14 13 19 19 N 1.31616 * 120.00497 * 7.09992 * 18 16 14 20 20 Si 1.86800 * 119.99878 * 187.10046 * 18 16 14 21 21 H 1.48504 * 109.47063 * 60.00018 * 20 18 16 22 22 H 1.48501 * 109.47347 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47369 * 300.00130 * 20 18 16 24 24 N 1.46493 * 109.47509 * 66.35233 * 3 2 1 25 25 C 1.46761 * 124.35237 * 239.72278 * 24 3 2 26 26 C 1.54668 * 105.38411 * 162.85157 * 25 24 3 27 27 C 1.54628 * 101.68163 * 25.77268 * 26 25 24 28 28 C 1.34422 * 124.34981 * 60.02578 * 24 3 2 29 29 O 1.21282 * 124.94217 * 0.38765 * 28 24 3 30 30 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47619 * 300.00581 * 1 2 3 32 32 H 1.09000 * 109.47083 * 60.00326 * 1 2 3 33 33 H 1.09003 * 109.47167 * 239.99654 * 2 1 3 34 34 H 1.09006 * 109.46733 * 119.99966 * 2 1 3 35 35 H 1.08996 * 110.36854 * 322.93201 * 8 7 5 36 36 H 1.09008 * 110.36253 * 85.14491 * 8 7 5 37 37 H 1.09004 * 111.00130 * 81.06464 * 9 8 7 38 38 H 1.08992 * 111.00584 * 204.87647 * 9 8 7 39 39 H 1.09006 * 110.68940 * 277.04159 * 10 9 8 40 40 H 1.08999 * 110.85253 * 153.69873 * 10 9 8 41 41 H 1.09005 * 109.47578 * 53.83604 * 13 11 7 42 42 H 1.08997 * 109.47525 * 293.82844 * 13 11 7 43 43 H 1.09000 * 109.46874 * 243.86048 * 15 14 13 44 44 H 1.09003 * 109.47372 * 3.85338 * 15 14 13 45 45 H 1.08992 * 109.47387 * 123.85785 * 15 14 13 46 46 H 0.96996 * 120.00324 * 179.97438 * 19 18 16 47 47 H 1.08992 * 110.25269 * 281.98692 * 25 24 3 48 48 H 1.09006 * 110.24520 * 43.98576 * 25 24 3 49 49 H 1.08994 * 111.19505 * 267.59617 * 26 25 24 50 50 H 1.08997 * 110.81976 * 143.77562 * 26 25 24 51 51 H 1.08996 * 110.48648 * 216.30944 * 27 26 25 52 52 H 1.08996 * 110.60467 * 93.71599 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5867 1.9880 -0.8277 5 6 3.5388 1.4453 -0.1573 6 8 4.2482 1.6841 0.7970 7 7 4.0908 1.1826 -1.3584 8 6 3.3514 0.9719 -2.6163 9 6 4.3041 0.1283 -3.4997 10 6 5.6891 0.7284 -3.1302 11 6 5.5303 1.0595 -1.6313 12 1 5.9547 0.2575 -1.0275 13 6 6.2350 2.3795 -1.3125 14 7 7.6834 2.2044 -1.4459 15 6 8.4732 1.7384 -0.3034 16 6 8.2991 2.4762 -2.6385 17 1 7.7064 2.6659 -3.5212 18 6 9.6848 2.5023 -2.7142 19 7 10.4076 2.1301 -1.6791 20 14 10.5240 3.0655 -4.2851 21 1 10.1219 4.4627 -4.5876 22 1 11.9973 3.0019 -4.1096 23 1 10.1201 2.1803 -5.4069 24 7 1.6805 2.0876 1.2651 25 6 0.8426 3.2875 1.3741 26 6 0.3821 3.3339 2.8499 27 6 1.5160 2.5551 3.5562 28 6 2.0805 1.6599 2.4751 29 8 2.7903 0.6964 2.6716 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8901 35 1 2.4273 0.4260 -2.4263 36 1 3.1353 1.9277 -3.0938 37 1 4.2536 -0.9270 -3.2315 38 1 4.0847 0.2712 -4.5577 39 1 5.8831 1.6330 -3.7066 40 1 6.4821 -0.0040 -3.2814 41 1 5.9980 2.6809 -0.2921 42 1 5.8967 3.1489 -2.0065 43 1 9.1752 2.5171 -0.0052 44 1 7.8080 1.5106 0.5295 45 1 9.0241 0.8409 -0.5844 46 1 11.3759 2.1479 -1.7321 47 1 1.4233 4.1767 1.1292 48 1 -0.0206 3.2061 0.7133 49 1 -0.5762 2.8311 2.9797 50 1 0.3332 4.3621 3.2083 51 1 1.1157 1.9579 4.3754 52 1 2.2810 3.2395 3.9226 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485079952.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:40 Heat of formation + Delta-G solvation = -51.241972 kcal Electronic energy + Delta-G solvation = -31642.769318 eV Core-core repulsion = 27642.615181 eV Total energy + Delta-G solvation = -4000.154137 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.94782 -40.70253 -38.59973 -37.37875 -37.19066 -35.84873 -33.49291 -32.50575 -31.94053 -30.66417 -28.44490 -28.19096 -27.89977 -26.78758 -24.34107 -23.21044 -22.88817 -22.70073 -21.97651 -20.63819 -19.50652 -18.90781 -18.36356 -17.80223 -17.34476 -17.07456 -16.60699 -16.34342 -16.01143 -15.53075 -15.37044 -15.18882 -15.13043 -14.67161 -14.53820 -14.36212 -14.24130 -13.94617 -13.84716 -13.79390 -13.49140 -13.42361 -13.31866 -13.02922 -12.85048 -12.70077 -12.63048 -12.39668 -12.32903 -12.20745 -12.13251 -12.08779 -11.90056 -11.85418 -11.78328 -11.56387 -11.50040 -10.85955 -10.64306 -10.60235 -9.74154 -9.62484 -8.90467 -7.75194 -5.21251 1.45994 1.50179 1.53950 1.56827 1.64204 1.89718 2.25051 2.52609 3.33231 3.36632 3.53173 3.64256 3.68471 3.80404 3.85150 3.89616 3.93289 4.04696 4.08726 4.24045 4.29477 4.35756 4.45687 4.46119 4.49986 4.63979 4.70426 4.70763 4.71264 4.80612 4.86625 4.87933 4.95227 5.05649 5.07484 5.10821 5.11411 5.16107 5.17628 5.25412 5.36665 5.38787 5.39232 5.48388 5.58303 5.65014 5.72448 6.22146 6.26066 6.61661 7.13063 7.17803 7.35033 7.83658 8.29766 9.25489 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016983 B = 0.003192 C = 0.002899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.324321 B = 8769.021328 C = 9655.054588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.130 4.130 3 C 0.155 3.845 4 H 0.149 0.851 5 C 0.498 3.502 6 O -0.569 6.569 7 N -0.612 5.612 8 C 0.092 3.908 9 C -0.122 4.122 10 C -0.105 4.105 11 C 0.126 3.874 12 H 0.022 0.978 13 C 0.158 3.842 14 N -0.621 5.621 15 C 0.195 3.805 16 C -0.246 4.246 17 H 0.090 0.910 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.978 3.022 21 H -0.277 1.277 22 H -0.300 1.300 23 H -0.270 1.270 24 N -0.610 5.610 25 C 0.095 3.905 26 C -0.112 4.112 27 C -0.155 4.155 28 C 0.504 3.496 29 O -0.573 6.573 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.040 0.960 35 H 0.108 0.892 36 H 0.091 0.909 37 H 0.074 0.926 38 H 0.114 0.886 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.023 0.977 42 H 0.051 0.949 43 H 0.018 0.982 44 H -0.007 1.007 45 H 0.015 0.985 46 H 0.243 0.757 47 H 0.069 0.931 48 H 0.115 0.885 49 H 0.103 0.897 50 H 0.113 0.887 51 H 0.107 0.893 52 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.920 0.961 -0.962 30.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.169 4.169 3 C 0.048 3.952 4 H 0.166 0.834 5 C 0.286 3.714 6 O -0.447 6.447 7 N -0.347 5.347 8 C -0.029 4.029 9 C -0.160 4.160 10 C -0.144 4.144 11 C 0.020 3.980 12 H 0.040 0.960 13 C 0.031 3.969 14 N -0.345 5.345 15 C 0.050 3.950 16 C -0.376 4.376 17 H 0.108 0.892 18 C -0.260 4.260 19 N -0.602 5.602 20 Si 0.806 3.194 21 H -0.203 1.203 22 H -0.226 1.226 23 H -0.195 1.195 24 N -0.344 5.344 25 C -0.026 4.026 26 C -0.150 4.150 27 C -0.195 4.195 28 C 0.293 3.707 29 O -0.451 6.451 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.104 0.896 33 H 0.107 0.893 34 H 0.059 0.941 35 H 0.126 0.874 36 H 0.110 0.890 37 H 0.093 0.907 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.041 0.959 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.011 0.989 45 H 0.034 0.966 46 H 0.053 0.947 47 H 0.087 0.913 48 H 0.133 0.867 49 H 0.122 0.878 50 H 0.131 0.869 51 H 0.125 0.875 52 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -30.041 0.591 -0.319 30.049 hybrid contribution 1.988 -0.044 -0.049 1.989 sum -28.053 0.546 -0.369 28.061 Atomic orbital electron populations 1.21662 0.91557 1.02794 1.03133 1.21835 0.99213 0.93068 1.02744 1.20933 0.88757 0.97152 0.88312 0.83381 1.21533 0.92338 0.76379 0.81192 1.90747 1.64585 1.49363 1.40007 1.48754 1.07145 1.70093 1.08737 1.22763 0.96041 1.01359 0.82757 1.22869 0.92336 0.99342 1.01432 1.22464 0.98356 1.01331 0.92201 1.22132 0.80602 0.97888 0.97420 0.95963 1.21000 0.82990 0.94892 0.98061 1.44169 1.02197 1.77925 1.10201 1.20586 0.90994 0.97277 0.86107 1.19674 0.89921 1.39897 0.88059 0.89197 1.25826 0.97263 1.01893 1.01027 1.70446 1.04345 1.54070 1.31374 0.85164 0.76645 0.78618 0.78973 1.20296 1.22647 1.19516 1.48186 1.51660 1.29964 1.04559 1.22502 0.94760 0.85657 0.99661 1.22642 0.97498 1.02772 0.92062 1.22374 1.00622 0.99199 0.97316 1.21628 0.78578 0.84411 0.86087 1.90689 1.38318 1.30993 1.85113 0.91859 0.92784 0.89572 0.89346 0.94136 0.87428 0.89049 0.90691 0.86742 0.90815 0.92331 0.95864 0.93045 0.96393 0.98858 0.96623 0.94695 0.91285 0.86687 0.87817 0.86862 0.87483 0.88467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.56 9.81 71.98 0.71 -0.86 16 2 C -0.13 -2.61 5.15 30.59 0.16 -2.45 16 3 C 0.16 3.43 1.92 44.25 0.08 3.52 16 4 H 0.15 1.94 7.71 -2.39 -0.02 1.92 16 5 C 0.50 17.11 6.79 87.66 0.59 17.71 16 6 O -0.57 -26.76 13.02 16.73 0.22 -26.55 16 7 N -0.61 -19.13 3.06 -788.06 -2.42 -21.55 16 8 C 0.09 1.71 6.41 86.86 0.56 2.27 16 9 C -0.12 -2.49 7.09 32.07 0.23 -2.26 16 10 C -0.11 -3.47 5.69 31.87 0.18 -3.28 16 11 C 0.13 5.04 3.13 45.34 0.14 5.18 16 12 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 13 C 0.16 7.49 5.11 86.38 0.44 7.93 16 14 N -0.62 -34.53 2.87 -726.94 -2.08 -36.62 16 15 C 0.20 11.58 8.99 127.77 1.15 12.73 16 16 C -0.25 -13.83 8.98 84.03 0.75 -13.07 16 17 H 0.09 4.64 6.81 -2.91 -0.02 4.62 16 18 C -0.07 -3.93 5.46 84.86 0.46 -3.46 16 19 N -0.95 -59.56 9.49 21.65 0.21 -59.36 16 20 Si 0.98 45.98 29.56 68.60 2.03 48.01 16 21 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 22 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 N -0.61 -13.51 2.24 -797.85 -1.79 -15.30 16 25 C 0.10 1.08 7.31 86.90 0.64 1.71 16 26 C -0.11 -0.93 7.19 31.72 0.23 -0.71 16 27 C -0.15 -2.83 6.86 30.59 0.21 -2.62 16 28 C 0.50 14.90 6.70 87.90 0.59 15.49 16 29 O -0.57 -24.05 14.84 16.73 0.25 -23.80 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.67 7.80 -2.39 -0.02 0.65 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 1.55 6.34 -2.39 -0.02 1.53 16 34 H 0.04 1.20 6.61 -2.38 -0.02 1.18 16 35 H 0.11 1.27 5.82 -2.39 -0.01 1.26 16 36 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 2.50 6.64 -2.38 -0.02 2.48 16 40 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.02 1.22 6.40 -2.38 -0.02 1.20 16 42 H 0.05 2.30 7.88 -2.39 -0.02 2.28 16 43 H 0.02 1.13 6.92 -2.39 -0.02 1.11 16 44 H -0.01 -0.41 7.85 -2.39 -0.02 -0.43 16 45 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 46 H 0.24 14.83 8.31 -92.71 -0.77 14.06 16 47 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 48 H 0.12 0.49 8.14 -2.38 -0.02 0.47 16 49 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 50 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 51 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 52 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -91.14 397.10 4.43 -86.71 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: 0.89 Total: 10.63 kcal Atomic # 6 Polarization: 30.70 SS G_CDS: 7.12 Total: 37.82 kcal Atomic # 7 Polarization: -126.74 SS G_CDS: -6.08 Total: -132.82 kcal Atomic # 8 Polarization: -50.81 SS G_CDS: 0.47 Total: -50.35 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.01 kcal Total: -91.14 4.43 -86.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485079952.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.468 kcal (2) G-P(sol) polarization free energy of solvation -91.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds