Wall clock time and date at job start Tue Mar 31 2020 20:44:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47156 * 305.00468 * 3 2 1 5 5 C 1.50692 * 109.47277 * 185.00114 * 3 2 1 6 6 O 1.21279 * 120.00265 * 247.90411 * 5 3 2 7 7 N 1.34782 * 119.99860 * 67.90340 * 5 3 2 8 8 C 1.47415 * 125.64890 * 4.45780 * 7 5 3 9 9 C 1.54911 * 104.83364 * 155.90520 * 8 7 5 10 10 C 1.55399 * 101.66397 * 36.92335 * 9 8 7 11 11 C 1.47026 * 125.64736 * 184.49664 * 7 5 3 12 12 H 1.09001 * 109.87929 * 300.59407 * 11 7 5 13 13 C 1.52998 * 109.88303 * 61.60410 * 11 7 5 14 14 N 1.46502 * 109.47162 * 182.95073 * 13 11 7 15 15 C 1.46499 * 119.99951 * 264.39472 * 14 13 11 16 16 C 1.36938 * 119.99484 * 84.39136 * 14 13 11 17 17 H 1.08002 * 120.00513 * 334.22169 * 16 14 13 18 18 C 1.38812 * 119.99422 * 154.22217 * 16 14 13 19 19 N 1.31619 * 120.00108 * 352.94614 * 18 16 14 20 20 Si 1.86804 * 119.99750 * 172.94884 * 18 16 14 21 21 H 1.48499 * 109.46834 * 184.99884 * 20 18 16 22 22 H 1.48505 * 109.47034 * 304.99762 * 20 18 16 23 23 H 1.48502 * 109.47245 * 64.99792 * 20 18 16 24 24 N 1.46504 * 109.47015 * 65.00023 * 3 2 1 25 25 C 1.46761 * 124.35089 * 241.64607 * 24 3 2 26 26 C 1.54483 * 105.47222 * 197.01461 * 25 24 3 27 27 C 1.54624 * 101.76654 * 334.58942 * 26 25 24 28 28 C 1.34420 * 124.34759 * 61.35017 * 24 3 2 29 29 O 1.21279 * 124.94323 * 359.57188 * 28 24 3 30 30 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47250 * 299.99443 * 1 2 3 32 32 H 1.08999 * 109.47787 * 59.99800 * 1 2 3 33 33 H 1.09002 * 109.46796 * 240.00278 * 2 1 3 34 34 H 1.08999 * 109.47319 * 120.00454 * 2 1 3 35 35 H 1.09003 * 110.36425 * 274.74467 * 8 7 5 36 36 H 1.09005 * 110.36802 * 36.95663 * 8 7 5 37 37 H 1.09007 * 111.00426 * 155.08369 * 9 8 7 38 38 H 1.08995 * 111.00531 * 278.89311 * 9 8 7 39 39 H 1.09004 * 110.84946 * 206.29700 * 10 9 8 40 40 H 1.09004 * 110.69523 * 82.95474 * 10 9 8 41 41 H 1.09003 * 109.46986 * 62.95228 * 13 11 7 42 42 H 1.09003 * 109.47132 * 302.95323 * 13 11 7 43 43 H 1.08996 * 109.46616 * 273.91887 * 15 14 13 44 44 H 1.08993 * 109.47377 * 33.92114 * 15 14 13 45 45 H 1.08997 * 109.47020 * 153.92498 * 15 14 13 46 46 H 0.97002 * 119.99652 * 179.97438 * 19 18 16 47 47 H 1.08997 * 110.24987 * 316.01760 * 25 24 3 48 48 H 1.09007 * 110.24187 * 78.01789 * 25 24 3 49 49 H 1.09007 * 110.96607 * 92.70457 * 26 25 24 50 50 H 1.08999 * 110.96878 * 216.42945 * 26 25 24 51 51 H 1.08992 * 110.48884 * 143.47488 * 27 26 25 52 52 H 1.09003 * 110.48242 * 265.98654 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 8 4.2266 1.8117 0.8072 7 7 4.1240 1.0377 -1.2694 8 6 3.4158 0.6560 -2.5047 9 6 4.4476 0.8791 -3.6384 10 6 5.7695 0.4363 -2.9519 11 6 5.5706 0.9006 -1.4937 12 1 6.0622 1.8612 -1.3402 13 6 6.1498 -0.1395 -0.5327 14 7 7.6013 -0.2181 -0.7152 15 6 8.1749 -1.2410 -1.5932 16 6 8.4218 0.6646 -0.0650 17 1 8.0475 1.6343 0.2283 18 6 9.7347 0.3130 0.2170 19 7 10.1515 -0.9139 -0.0137 20 14 10.9099 1.5813 0.9241 21 1 12.2709 0.9952 1.0210 22 1 10.9456 2.7718 0.0370 23 1 10.4474 1.9852 2.2762 24 7 1.6524 2.0975 1.2518 25 6 0.7795 3.2743 1.3350 26 6 1.0051 3.8558 2.7483 27 6 1.4702 2.6070 3.5325 28 6 2.0461 1.6943 2.4722 29 8 2.7610 0.7395 2.6913 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1185 -0.3918 -2.4631 36 1 2.5429 1.2917 -2.6534 37 1 4.2240 0.2496 -4.4997 38 1 4.4912 1.9296 -3.9259 39 1 6.6270 0.9362 -3.4023 40 1 5.8843 -0.6467 -2.9995 41 1 5.7045 -1.1128 -0.7392 42 1 5.9279 0.1511 0.4941 43 1 8.3175 -2.1638 -1.0310 44 1 7.4980 -1.4247 -2.4276 45 1 9.1359 -0.8955 -1.9742 46 1 11.0691 -1.1594 0.1831 47 1 1.0593 4.0059 0.5770 48 1 -0.2628 2.9804 1.2100 49 1 1.7819 4.6204 2.7361 50 1 0.0768 4.2522 3.1598 51 1 2.2331 2.8771 4.2625 52 1 0.6237 2.1291 4.0257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485079955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:44 Heat of formation + Delta-G solvation = -33.303042 kcal Electronic energy + Delta-G solvation = -31770.959778 eV Core-core repulsion = 27771.583532 eV Total energy + Delta-G solvation = -3999.376246 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.86499 -39.48287 -37.17283 -36.27448 -35.26758 -34.84165 -31.57670 -31.25673 -31.03438 -29.06686 -27.66649 -27.10765 -25.95448 -25.06155 -23.02743 -22.23009 -22.04630 -21.10533 -20.74753 -19.39273 -18.31193 -17.14996 -16.92491 -16.52267 -16.37075 -15.93626 -15.14249 -14.67862 -14.62611 -14.47927 -14.13523 -13.70972 -13.68460 -13.45109 -13.38381 -13.10917 -13.07187 -12.95596 -12.72830 -12.68383 -12.60446 -12.02643 -11.85193 -11.74519 -11.70974 -11.35090 -11.22670 -11.09348 -11.03803 -10.94808 -10.78879 -10.71942 -10.55979 -10.30432 -9.99320 -9.79158 -9.72445 -9.56065 -9.43735 -8.61384 -8.46432 -8.22994 -6.53564 -5.60963 -3.07436 2.61753 2.90588 2.93706 3.39699 3.48817 3.52456 3.55561 4.24923 4.30746 4.53668 4.60637 4.63536 4.71242 4.74811 4.75749 4.92879 5.02880 5.04219 5.15917 5.21020 5.27982 5.35097 5.45630 5.50544 5.52076 5.54665 5.61576 5.68204 5.72044 5.74992 5.79584 5.83396 5.90494 5.93583 6.07862 6.11126 6.29458 6.33794 6.45639 6.58180 6.70070 6.85728 6.95711 7.16552 7.19937 7.50518 7.81666 7.87959 7.96067 8.33720 8.54450 8.59838 9.39637 10.00575 10.50584 11.45670 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.003783 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.276885 B = 7399.748833 C = 8779.937161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.137 4.137 3 C 0.151 3.849 4 H 0.104 0.896 5 C 0.512 3.488 6 O -0.504 6.504 7 N -0.613 5.613 8 C 0.099 3.901 9 C -0.135 4.135 10 C -0.114 4.114 11 C 0.119 3.881 12 H 0.072 0.928 13 C 0.147 3.853 14 N -0.596 5.596 15 C 0.163 3.837 16 C -0.246 4.246 17 H 0.066 0.934 18 C 0.002 3.998 19 N -0.913 5.913 20 Si 0.904 3.096 21 H -0.291 1.291 22 H -0.284 1.284 23 H -0.284 1.284 24 N -0.611 5.611 25 C 0.107 3.893 26 C -0.130 4.130 27 C -0.154 4.154 28 C 0.523 3.477 29 O -0.502 6.502 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.067 0.933 36 H 0.067 0.933 37 H 0.078 0.922 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.034 0.966 42 H 0.056 0.944 43 H 0.014 0.986 44 H -0.006 1.006 45 H 0.058 0.942 46 H 0.251 0.749 47 H 0.075 0.925 48 H 0.070 0.930 49 H 0.082 0.918 50 H 0.088 0.912 51 H 0.101 0.899 52 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.514 6.920 -4.902 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.176 4.176 3 C 0.044 3.956 4 H 0.122 0.878 5 C 0.297 3.703 6 O -0.377 6.377 7 N -0.350 5.350 8 C -0.024 4.024 9 C -0.173 4.173 10 C -0.152 4.152 11 C 0.014 3.986 12 H 0.090 0.910 13 C 0.019 3.981 14 N -0.319 5.319 15 C 0.019 3.981 16 C -0.376 4.376 17 H 0.084 0.916 18 C -0.196 4.196 19 N -0.559 5.559 20 Si 0.735 3.265 21 H -0.217 1.217 22 H -0.210 1.210 23 H -0.210 1.210 24 N -0.347 5.347 25 C -0.017 4.017 26 C -0.168 4.168 27 C -0.195 4.195 28 C 0.310 3.690 29 O -0.375 6.375 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.052 0.948 42 H 0.074 0.926 43 H 0.032 0.968 44 H 0.012 0.988 45 H 0.077 0.923 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.101 0.899 50 H 0.106 0.894 51 H 0.119 0.881 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -24.557 6.507 -4.195 25.748 hybrid contribution 0.699 0.723 0.250 1.036 sum -23.858 7.230 -3.945 25.239 Atomic orbital electron populations 1.21699 0.94812 1.01921 1.01602 1.21897 0.96633 0.94425 1.04645 1.20781 0.92483 0.95430 0.86933 0.87806 1.20339 0.89882 0.78305 0.81790 1.90786 1.64321 1.45410 1.37152 1.48621 1.08287 1.66559 1.11506 1.22333 0.95501 0.99871 0.84730 1.22844 0.95705 1.01861 0.96936 1.22680 0.96622 1.01895 0.94011 1.22542 0.78289 1.01632 0.96175 0.90961 1.20966 0.85438 0.94358 0.97372 1.43783 0.99391 1.37022 1.51714 1.20856 0.95837 0.91608 0.89842 1.19169 0.92598 0.94714 1.31146 0.91641 1.25070 0.98678 0.95946 0.99869 1.70043 1.16443 1.16618 1.52748 0.86331 0.80101 0.80719 0.79390 1.21666 1.21049 1.21017 1.47936 1.50157 1.31145 1.05439 1.22052 0.93971 0.87148 0.98482 1.22567 1.02779 0.97411 0.94075 1.22302 1.02857 0.96124 0.98174 1.20697 0.79418 0.84977 0.83863 1.90766 1.34849 1.28679 1.83236 0.92311 0.92708 0.92774 0.90143 0.89676 0.91513 0.91426 0.90294 0.91058 0.90196 0.90517 0.94794 0.92552 0.96757 0.98801 0.92304 0.93842 0.90704 0.91170 0.89929 0.89357 0.88083 0.88236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.80 37.16 0.36 -0.80 16 2 C -0.14 -1.57 5.28 -26.73 -0.14 -1.71 16 3 C 0.15 1.86 2.05 -69.08 -0.14 1.72 16 4 H 0.10 0.95 7.33 -51.93 -0.38 0.56 16 5 C 0.51 8.90 6.67 -10.99 -0.07 8.83 16 6 O -0.50 -11.45 13.54 -14.11 -0.19 -11.64 16 7 N -0.61 -9.82 3.07 -163.02 -0.50 -10.32 16 8 C 0.10 1.09 5.67 -2.53 -0.01 1.08 16 9 C -0.14 -1.50 7.09 -24.45 -0.17 -1.67 16 10 C -0.11 -1.78 5.65 -24.77 -0.14 -1.92 16 11 C 0.12 2.28 3.07 -66.96 -0.21 2.08 16 12 H 0.07 1.61 8.14 -51.93 -0.42 1.19 16 13 C 0.15 3.48 5.11 -4.04 -0.02 3.46 16 14 N -0.60 -16.06 2.76 -181.12 -0.50 -16.57 16 15 C 0.16 4.17 8.68 59.85 0.52 4.69 16 16 C -0.25 -7.32 9.64 -15.06 -0.15 -7.47 16 17 H 0.07 1.98 7.84 -52.49 -0.41 1.57 16 18 C 0.00 0.05 5.16 -17.43 -0.09 -0.04 16 19 N -0.91 -27.99 10.62 55.49 0.59 -27.40 16 20 Si 0.90 23.39 29.56 -169.99 -5.02 18.36 16 21 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 22 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 24 N -0.61 -7.43 2.14 -166.16 -0.36 -7.79 16 25 C 0.11 0.81 7.30 -3.12 -0.02 0.78 16 26 C -0.13 -0.92 7.18 -25.10 -0.18 -1.10 16 27 C -0.15 -1.55 6.86 -26.74 -0.18 -1.73 16 28 C 0.52 7.89 6.67 -10.86 -0.07 7.82 16 29 O -0.50 -10.29 15.05 -14.11 -0.21 -10.50 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 32 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.84 5.99 -51.93 -0.31 0.53 16 34 H 0.08 1.29 6.72 -51.93 -0.35 0.94 16 35 H 0.07 0.68 7.14 -51.93 -0.37 0.31 16 36 H 0.07 0.56 7.27 -51.93 -0.38 0.18 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.31 8.14 -51.93 -0.42 0.89 16 40 H 0.08 1.24 6.14 -51.93 -0.32 0.92 16 41 H 0.03 0.76 7.96 -51.93 -0.41 0.35 16 42 H 0.06 1.54 6.86 -51.93 -0.36 1.19 16 43 H 0.01 0.39 7.81 -51.93 -0.41 -0.01 16 44 H -0.01 -0.14 5.97 -51.93 -0.31 -0.45 16 45 H 0.06 1.62 6.74 -51.93 -0.35 1.27 16 46 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 47 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 48 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 49 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 50 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 51 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 52 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 397.48 15.07 5.99 5.99 Total: -1.00 -38.40 397.48 -9.89 -48.29 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.97 Total: -2.46 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -0.72 Total: 14.02 kcal Atomic # 7 Polarization: -61.30 SS G_CDS: -0.77 Total: -62.07 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.40 Total: -22.14 kcal Atomic # 14 Polarization: 23.39 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -38.40 -9.89 -48.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485079955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.987 kcal (2) G-P(sol) polarization free energy of solvation -38.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds