Wall clock time and date at job start Tue Mar 31 2020 20:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47140 * 2 1 4 4 H 1.08997 * 109.47156 * 305.00468 * 3 2 1 5 5 C 1.50692 * 109.47277 * 185.00114 * 3 2 1 6 6 O 1.21279 * 120.00265 * 247.90411 * 5 3 2 7 7 N 1.34782 * 119.99860 * 67.90340 * 5 3 2 8 8 C 1.47415 * 125.64890 * 4.45780 * 7 5 3 9 9 C 1.54911 * 104.83364 * 155.90520 * 8 7 5 10 10 C 1.55399 * 101.66397 * 36.92335 * 9 8 7 11 11 C 1.47026 * 125.64736 * 184.49664 * 7 5 3 12 12 H 1.09001 * 109.87929 * 300.59407 * 11 7 5 13 13 C 1.52998 * 109.88303 * 61.60410 * 11 7 5 14 14 N 1.46502 * 109.47162 * 182.95073 * 13 11 7 15 15 C 1.46499 * 119.99951 * 264.39472 * 14 13 11 16 16 C 1.36938 * 119.99484 * 84.39136 * 14 13 11 17 17 H 1.08002 * 120.00513 * 334.22169 * 16 14 13 18 18 C 1.38812 * 119.99422 * 154.22217 * 16 14 13 19 19 N 1.31619 * 120.00108 * 352.94614 * 18 16 14 20 20 Si 1.86804 * 119.99750 * 172.94884 * 18 16 14 21 21 H 1.48499 * 109.46834 * 184.99884 * 20 18 16 22 22 H 1.48505 * 109.47034 * 304.99762 * 20 18 16 23 23 H 1.48502 * 109.47245 * 64.99792 * 20 18 16 24 24 N 1.46504 * 109.47015 * 65.00023 * 3 2 1 25 25 C 1.46761 * 124.35089 * 241.64607 * 24 3 2 26 26 C 1.54483 * 105.47222 * 197.01461 * 25 24 3 27 27 C 1.54624 * 101.76654 * 334.58942 * 26 25 24 28 28 C 1.34420 * 124.34759 * 61.35017 * 24 3 2 29 29 O 1.21279 * 124.94323 * 359.57188 * 28 24 3 30 30 H 1.09003 * 109.47186 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47250 * 299.99443 * 1 2 3 32 32 H 1.08999 * 109.47787 * 59.99800 * 1 2 3 33 33 H 1.09002 * 109.46796 * 240.00278 * 2 1 3 34 34 H 1.08999 * 109.47319 * 120.00454 * 2 1 3 35 35 H 1.09003 * 110.36425 * 274.74467 * 8 7 5 36 36 H 1.09005 * 110.36802 * 36.95663 * 8 7 5 37 37 H 1.09007 * 111.00426 * 155.08369 * 9 8 7 38 38 H 1.08995 * 111.00531 * 278.89311 * 9 8 7 39 39 H 1.09004 * 110.84946 * 206.29700 * 10 9 8 40 40 H 1.09004 * 110.69523 * 82.95474 * 10 9 8 41 41 H 1.09003 * 109.46986 * 62.95228 * 13 11 7 42 42 H 1.09003 * 109.47132 * 302.95323 * 13 11 7 43 43 H 1.08996 * 109.46616 * 273.91887 * 15 14 13 44 44 H 1.08993 * 109.47377 * 33.92114 * 15 14 13 45 45 H 1.08997 * 109.47020 * 153.92498 * 15 14 13 46 46 H 0.97002 * 119.99652 * 179.97438 * 19 18 16 47 47 H 1.08997 * 110.24987 * 316.01760 * 25 24 3 48 48 H 1.09007 * 110.24187 * 78.01789 * 25 24 3 49 49 H 1.09007 * 110.96607 * 92.70457 * 26 25 24 50 50 H 1.08999 * 110.96878 * 216.42945 * 26 25 24 51 51 H 1.08992 * 110.48884 * 143.47488 * 27 26 25 52 52 H 1.09003 * 110.48242 * 265.98654 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 3.5418 1.4444 -0.1239 6 8 4.2266 1.8117 0.8072 7 7 4.1240 1.0377 -1.2694 8 6 3.4158 0.6560 -2.5047 9 6 4.4476 0.8791 -3.6384 10 6 5.7695 0.4363 -2.9519 11 6 5.5706 0.9006 -1.4937 12 1 6.0622 1.8612 -1.3402 13 6 6.1498 -0.1395 -0.5327 14 7 7.6013 -0.2181 -0.7152 15 6 8.1749 -1.2410 -1.5932 16 6 8.4218 0.6646 -0.0650 17 1 8.0475 1.6343 0.2283 18 6 9.7347 0.3130 0.2170 19 7 10.1515 -0.9139 -0.0137 20 14 10.9099 1.5813 0.9241 21 1 12.2709 0.9952 1.0210 22 1 10.9456 2.7718 0.0370 23 1 10.4474 1.9852 2.2762 24 7 1.6524 2.0975 1.2518 25 6 0.7795 3.2743 1.3350 26 6 1.0051 3.8558 2.7483 27 6 1.4702 2.6070 3.5325 28 6 2.0461 1.6943 2.4722 29 8 2.7610 0.7395 2.6913 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8932 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.1185 -0.3918 -2.4631 36 1 2.5429 1.2917 -2.6534 37 1 4.2240 0.2496 -4.4997 38 1 4.4912 1.9296 -3.9259 39 1 6.6270 0.9362 -3.4023 40 1 5.8843 -0.6467 -2.9995 41 1 5.7045 -1.1128 -0.7392 42 1 5.9279 0.1511 0.4941 43 1 8.3175 -2.1638 -1.0310 44 1 7.4980 -1.4247 -2.4276 45 1 9.1359 -0.8955 -1.9742 46 1 11.0691 -1.1594 0.1831 47 1 1.0593 4.0059 0.5770 48 1 -0.2628 2.9804 1.2100 49 1 1.7819 4.6204 2.7361 50 1 0.0768 4.2522 3.1598 51 1 2.2331 2.8771 4.2625 52 1 0.6237 2.1291 4.0257 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485079955.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:44:43 Heat of formation + Delta-G solvation = -59.088521 kcal Electronic energy + Delta-G solvation = -31772.077920 eV Core-core repulsion = 27771.583532 eV Total energy + Delta-G solvation = -4000.494389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.95212 -40.70377 -38.61818 -37.40088 -37.15406 -35.87153 -33.59205 -32.48941 -31.89265 -30.71977 -28.45304 -28.13385 -27.99650 -26.85484 -24.33374 -23.15697 -22.82993 -22.72498 -22.11076 -20.69627 -19.53080 -18.72977 -18.25850 -17.83958 -17.41104 -17.28447 -16.69436 -16.37723 -15.67364 -15.57896 -15.50318 -15.20251 -15.19065 -14.81010 -14.59092 -14.52365 -14.17895 -14.03744 -13.80605 -13.74647 -13.61198 -13.31334 -13.21652 -13.05683 -12.83946 -12.83397 -12.62438 -12.41391 -12.38691 -12.23953 -12.17059 -12.07331 -11.98189 -11.86405 -11.82828 -11.61656 -11.48501 -10.89969 -10.69365 -10.61306 -9.70885 -9.63862 -8.73923 -7.91908 -5.42043 1.35919 1.40227 1.46861 1.53645 1.62185 1.95217 2.24594 2.45099 3.22006 3.34989 3.54217 3.64815 3.65166 3.77154 3.84665 3.89214 3.91166 4.05367 4.08396 4.18694 4.31105 4.35804 4.37241 4.48448 4.50716 4.65832 4.68301 4.69577 4.82177 4.82794 4.87444 4.88317 4.97143 5.03849 5.06800 5.07927 5.11669 5.16551 5.17774 5.24011 5.28249 5.37163 5.41565 5.48514 5.52136 5.63946 5.65687 6.21347 6.28176 6.62029 7.10153 7.18920 7.35049 7.78950 8.22792 9.12018 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012228 B = 0.003783 C = 0.003188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.276885 B = 7399.748833 C = 8779.937161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.132 4.132 3 C 0.156 3.844 4 H 0.153 0.847 5 C 0.497 3.503 6 O -0.573 6.573 7 N -0.613 5.613 8 C 0.091 3.909 9 C -0.118 4.118 10 C -0.111 4.111 11 C 0.130 3.870 12 H 0.030 0.970 13 C 0.157 3.843 14 N -0.611 5.611 15 C 0.180 3.820 16 C -0.264 4.264 17 H 0.047 0.953 18 C -0.047 4.047 19 N -0.937 5.937 20 Si 0.969 3.031 21 H -0.281 1.281 22 H -0.271 1.271 23 H -0.288 1.288 24 N -0.610 5.610 25 C 0.099 3.901 26 C -0.120 4.120 27 C -0.152 4.152 28 C 0.502 3.498 29 O -0.576 6.576 30 H 0.061 0.939 31 H 0.051 0.949 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.034 0.966 35 H 0.083 0.917 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.042 0.958 42 H 0.003 0.997 43 H -0.014 1.014 44 H 0.037 0.963 45 H 0.036 0.964 46 H 0.252 0.748 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.071 0.929 50 H 0.129 0.871 51 H 0.086 0.914 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.451 8.529 -7.749 31.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.171 4.171 3 C 0.049 3.951 4 H 0.170 0.830 5 C 0.285 3.715 6 O -0.451 6.451 7 N -0.348 5.348 8 C -0.029 4.029 9 C -0.155 4.155 10 C -0.149 4.149 11 C 0.024 3.976 12 H 0.048 0.952 13 C 0.029 3.971 14 N -0.335 5.335 15 C 0.036 3.964 16 C -0.394 4.394 17 H 0.065 0.935 18 C -0.242 4.242 19 N -0.583 5.583 20 Si 0.796 3.204 21 H -0.206 1.206 22 H -0.197 1.197 23 H -0.215 1.215 24 N -0.344 5.344 25 C -0.021 4.021 26 C -0.157 4.157 27 C -0.192 4.192 28 C 0.291 3.709 29 O -0.455 6.455 30 H 0.080 0.920 31 H 0.070 0.930 32 H 0.106 0.894 33 H 0.110 0.890 34 H 0.053 0.947 35 H 0.101 0.899 36 H 0.130 0.870 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.093 0.907 41 H 0.060 0.940 42 H 0.021 0.979 43 H 0.005 0.995 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.108 0.892 48 H 0.126 0.874 49 H 0.090 0.910 50 H 0.147 0.853 51 H 0.104 0.896 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -28.587 8.152 -7.116 30.566 hybrid contribution 1.894 0.196 1.173 2.236 sum -26.693 8.347 -5.944 28.592 Atomic orbital electron populations 1.21652 0.91564 1.02738 1.03078 1.21856 0.99226 0.93214 1.02767 1.20944 0.88443 0.96961 0.88712 0.82952 1.21531 0.92199 0.76791 0.80959 1.90757 1.66326 1.48429 1.39555 1.48729 1.07098 1.65806 1.13197 1.22772 0.96440 1.01888 0.81847 1.22858 0.91970 1.03156 0.97558 1.22574 0.99384 1.01478 0.91454 1.22001 0.80470 0.97690 0.97475 0.95207 1.20904 0.84247 0.96008 0.95903 1.43955 1.00483 1.36909 1.52169 1.20634 0.95828 0.89677 0.90296 1.19257 0.93556 0.94729 1.31846 0.93511 1.25816 1.00006 0.98041 1.00293 1.70197 1.16686 1.18067 1.53340 0.85331 0.78026 0.78727 0.78289 1.20595 1.19690 1.21505 1.48180 1.49721 1.31958 1.04532 1.22477 0.94915 0.85704 0.99039 1.22633 1.04216 0.95446 0.93450 1.22354 1.03044 0.96835 0.96993 1.21672 0.78574 0.84588 0.86040 1.90716 1.38206 1.31968 1.84622 0.91958 0.92974 0.89377 0.89049 0.94662 0.89857 0.86955 0.86545 0.90088 0.91291 0.90734 0.94007 0.97889 0.99537 0.94451 0.94491 0.93914 0.89178 0.87361 0.90982 0.85281 0.89568 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.69 9.80 71.98 0.71 -0.99 16 2 C -0.13 -2.83 5.28 30.59 0.16 -2.67 16 3 C 0.16 3.59 2.05 44.24 0.09 3.68 16 4 H 0.15 1.98 7.33 -2.39 -0.02 1.96 16 5 C 0.50 17.82 6.67 87.65 0.58 18.40 16 6 O -0.57 -28.36 13.54 15.78 0.21 -28.15 16 7 N -0.61 -19.52 3.07 -788.07 -2.42 -21.94 16 8 C 0.09 1.65 5.67 86.86 0.49 2.14 16 9 C -0.12 -2.11 7.09 32.07 0.23 -1.88 16 10 C -0.11 -3.34 5.65 31.87 0.18 -3.16 16 11 C 0.13 5.22 3.07 45.34 0.14 5.36 16 12 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 13 C 0.16 7.95 5.11 86.38 0.44 8.39 16 14 N -0.61 -34.88 2.76 -726.95 -2.01 -36.89 16 15 C 0.18 9.53 8.68 127.77 1.11 10.63 16 16 C -0.26 -16.62 9.64 84.03 0.81 -15.81 16 17 H 0.05 3.06 7.84 -2.91 -0.02 3.04 16 18 C -0.05 -2.87 5.16 84.86 0.44 -2.43 16 19 N -0.94 -59.43 10.62 21.65 0.23 -59.20 16 20 Si 0.97 49.77 29.56 68.60 2.03 51.80 16 21 H -0.28 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.27 -13.30 7.11 99.48 0.71 -12.60 16 23 H -0.29 -14.95 7.11 99.48 0.71 -14.24 16 24 N -0.61 -14.19 2.14 -798.20 -1.71 -15.90 16 25 C 0.10 1.14 7.30 86.83 0.63 1.77 16 26 C -0.12 -1.37 7.18 31.65 0.23 -1.14 16 27 C -0.15 -3.03 6.86 30.59 0.21 -2.82 16 28 C 0.50 15.90 6.67 87.90 0.59 16.49 16 29 O -0.58 -26.08 15.05 15.78 0.24 -25.85 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.05 0.70 7.75 -2.39 -0.02 0.68 16 32 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.09 1.69 5.99 -2.39 -0.01 1.68 16 34 H 0.03 1.12 6.72 -2.39 -0.02 1.11 16 35 H 0.08 1.31 7.14 -2.39 -0.02 1.29 16 36 H 0.11 1.12 7.27 -2.38 -0.02 1.10 16 37 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 38 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.07 2.28 6.14 -2.38 -0.01 2.26 16 41 H 0.04 1.99 7.96 -2.39 -0.02 1.97 16 42 H 0.00 0.16 6.86 -2.39 -0.02 0.14 16 43 H -0.01 -0.80 7.81 -2.39 -0.02 -0.81 16 44 H 0.04 1.62 5.97 -2.39 -0.01 1.61 16 45 H 0.04 2.09 6.74 -2.39 -0.02 2.07 16 46 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 49 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 50 H 0.13 0.47 8.14 -2.39 -0.02 0.46 16 51 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 52 H 0.12 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -98.01 397.48 4.50 -93.50 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.89 Total: 6.65 kcal Atomic # 6 Polarization: 28.94 SS G_CDS: 7.04 Total: 35.98 kcal Atomic # 7 Polarization: -128.02 SS G_CDS: -5.91 Total: -133.93 kcal Atomic # 8 Polarization: -54.45 SS G_CDS: 0.45 Total: -54.00 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.03 Total: 51.80 kcal Total: -98.01 4.50 -93.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485079955.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.413 kcal (2) G-P(sol) polarization free energy of solvation -98.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds