Wall clock time and date at job start Tue Mar 31 2020 19:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47042 * 2 1 4 4 C 1.50704 * 109.46830 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00146 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99733 * 179.97438 * 4 3 2 7 7 C 1.47427 * 125.65055 * 0.04052 * 6 4 3 8 8 C 1.54909 * 104.83422 * 204.09032 * 7 6 4 9 9 C 1.55407 * 101.66736 * 323.08074 * 8 7 6 10 10 C 1.47021 * 125.64624 * 179.97438 * 6 4 3 11 11 H 1.08999 * 109.88569 * 59.40985 * 10 6 4 12 12 C 1.50700 * 109.88387 * 298.39414 * 10 6 4 13 13 O 1.21279 * 120.00113 * 0.31676 * 12 10 6 14 14 N 1.34784 * 119.99961 * 180.31444 * 12 10 6 15 15 C 1.46494 * 119.99635 * 180.02562 * 14 12 10 16 16 H 1.09000 * 112.85565 * 334.66170 * 15 14 12 17 17 C 1.53785 * 113.61451 * 105.86837 * 15 14 12 18 18 C 1.54048 * 86.98663 * 89.15971 * 17 15 14 19 19 H 1.09003 * 113.60898 * 270.88759 * 18 17 15 20 20 C 1.52998 * 113.69493 * 139.99333 * 18 17 15 21 21 N 1.46500 * 109.47413 * 87.46424 * 20 18 17 22 22 C 1.36935 * 120.00351 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99621 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00420 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99843 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00450 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47107 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47288 * 119.99985 * 26 24 22 29 29 H 1.48501 * 109.47365 * 240.00617 * 26 24 22 30 30 C 1.53777 * 87.08039 * 25.43225 * 18 17 15 31 31 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46736 * 300.00002 * 1 2 3 33 33 H 1.08994 * 109.47254 * 59.99598 * 1 2 3 34 34 H 1.09000 * 109.46736 * 239.99998 * 2 1 3 35 35 H 1.09003 * 109.47010 * 120.00391 * 2 1 3 36 36 H 1.09000 * 109.47357 * 60.00378 * 3 2 1 37 37 H 1.09003 * 109.47537 * 300.00068 * 3 2 1 38 38 H 1.08998 * 110.36681 * 322.93362 * 7 6 4 39 39 H 1.09011 * 110.36462 * 85.14566 * 7 6 4 40 40 H 1.09000 * 111.00034 * 81.06483 * 8 7 6 41 41 H 1.08999 * 111.00641 * 204.87917 * 8 7 6 42 42 H 1.09004 * 110.69024 * 277.04345 * 9 8 7 43 43 H 1.08997 * 110.85596 * 153.70231 * 9 8 7 44 44 H 0.96995 * 120.00015 * 359.72695 * 14 12 10 45 45 H 1.09000 * 113.61017 * 203.66593 * 17 15 14 46 46 H 1.08996 * 113.61117 * 334.56058 * 17 15 14 47 47 H 1.08999 * 109.47007 * 207.46162 * 20 18 17 48 48 H 1.09002 * 109.47309 * 327.46123 * 20 18 17 49 49 H 0.97001 * 119.99737 * 0.02562 * 21 20 18 50 50 H 0.96991 * 120.00091 * 179.97438 * 25 24 22 51 51 H 1.09000 * 113.61770 * 220.02836 * 30 18 17 52 52 H 1.09000 * 113.61327 * 89.11909 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6096 -0.0013 7 6 3.6131 3.9527 -0.0006 8 6 4.6943 4.8777 -0.6129 9 6 5.9985 4.2648 -0.0308 10 6 5.6840 2.7542 -0.0014 11 1 6.1042 2.2712 -0.8835 12 6 6.2604 2.1347 1.2456 13 8 5.5267 1.6142 2.0590 14 7 7.5914 2.1589 1.4568 15 6 8.1517 1.5561 2.6688 16 1 7.4396 1.5232 3.4933 17 6 8.8657 0.2175 2.4175 18 6 10.1451 1.0393 2.1705 19 1 10.2731 1.3466 1.1326 20 6 11.4061 0.4068 2.7627 21 7 11.9866 -0.5253 1.7930 22 6 13.1287 -1.2137 2.1039 23 1 13.6013 -1.0699 3.0644 24 6 13.6784 -2.0972 1.1853 25 7 13.1022 -2.2729 0.0150 26 14 15.2368 -3.0359 1.6092 27 1 15.6836 -2.6622 2.9752 28 1 14.9648 -4.4949 1.5596 29 1 16.3006 -2.6970 0.6300 30 6 9.5242 2.1271 3.0628 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 2.7132 3.9621 -0.6155 39 1 3.3789 4.2626 1.0180 40 1 4.6889 4.8179 -1.7012 41 1 4.5623 5.9070 -0.2796 42 1 6.1842 4.6395 0.9759 43 1 6.8479 4.4696 -0.6824 44 1 8.1785 2.5716 0.8044 45 1 8.9201 -0.4206 3.2995 46 1 8.5064 -0.3098 1.5338 47 1 12.1301 1.1880 2.9941 48 1 11.1485 -0.1316 3.6749 49 1 11.5623 -0.6541 0.9302 50 1 13.4865 -2.8900 -0.6271 51 1 9.6961 3.1404 2.6997 52 1 9.7584 2.0101 4.1209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485705564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:04 Heat of formation + Delta-G solvation = -47.692581 kcal Electronic energy + Delta-G solvation = -29556.922074 eV Core-core repulsion = 25556.921850 eV Total energy + Delta-G solvation = -4000.000224 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.94962 -39.63399 -38.25903 -37.27625 -34.58990 -34.48590 -33.21360 -31.95638 -30.89439 -29.93927 -28.04720 -26.73739 -25.44332 -24.50855 -23.37197 -22.27432 -22.10734 -21.35956 -20.75078 -19.30790 -18.96279 -17.76568 -17.35032 -16.99721 -16.18961 -15.99445 -15.80842 -15.06286 -14.93068 -14.73191 -14.34611 -14.16065 -14.09060 -13.74804 -13.59951 -13.55335 -13.26648 -13.16064 -12.77227 -12.69691 -12.35229 -12.26386 -12.08597 -12.02495 -11.95287 -11.81414 -11.55979 -11.40544 -11.34904 -10.99720 -10.97872 -10.81554 -10.42775 -10.29033 -10.03084 -9.96118 -9.91533 -9.77679 -9.57116 -8.93397 -8.87175 -8.79722 -6.85762 -5.71850 -2.99988 2.41970 2.60507 2.67725 3.22499 3.46160 3.51451 3.53967 3.96170 4.03090 4.38009 4.47718 4.61364 4.61730 4.65286 4.73284 4.74895 4.76811 4.87712 4.97316 5.09782 5.16101 5.16608 5.20431 5.22463 5.25953 5.32249 5.34791 5.40003 5.45770 5.62307 5.64198 5.76849 5.78008 5.87080 5.90845 5.93491 5.99057 6.06822 6.10546 6.16056 6.32848 6.38306 6.49309 6.69978 6.82996 6.99002 7.25229 7.50406 7.74449 8.06236 8.25340 8.47364 9.58193 10.17917 10.52274 11.51239 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002140 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.436268 B =13077.936478 C =14012.999967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.112 4.112 3 C -0.131 4.131 4 C 0.533 3.467 5 O -0.519 6.519 6 N -0.607 5.607 7 C 0.099 3.901 8 C -0.131 4.131 9 C -0.124 4.124 10 C 0.118 3.882 11 H 0.102 0.898 12 C 0.509 3.491 13 O -0.522 6.522 14 N -0.708 5.708 15 C 0.118 3.882 16 H 0.096 0.904 17 C -0.139 4.139 18 C -0.112 4.112 19 H 0.087 0.913 20 C 0.162 3.838 21 N -0.732 5.732 22 C -0.237 4.237 23 H 0.070 0.930 24 C -0.017 4.017 25 N -0.934 5.934 26 Si 0.907 3.093 27 H -0.281 1.281 28 H -0.292 1.292 29 H -0.292 1.292 30 C -0.137 4.137 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.091 0.909 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.400 0.600 45 H 0.089 0.911 46 H 0.068 0.932 47 H 0.018 0.982 48 H 0.020 0.980 49 H 0.383 0.617 50 H 0.254 0.746 51 H 0.068 0.932 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.213 19.502 -1.784 31.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.171 4.171 4 C 0.322 3.678 5 O -0.393 6.393 6 N -0.343 5.343 7 C -0.023 4.023 8 C -0.169 4.169 9 C -0.163 4.163 10 C 0.010 3.990 11 H 0.120 0.880 12 C 0.293 3.707 13 O -0.397 6.397 14 N -0.360 5.360 15 C 0.013 3.987 16 H 0.114 0.886 17 C -0.178 4.178 18 C -0.131 4.131 19 H 0.105 0.895 20 C 0.035 3.965 21 N -0.376 5.376 22 C -0.369 4.369 23 H 0.088 0.912 24 C -0.212 4.212 25 N -0.583 5.583 26 Si 0.738 3.262 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 C -0.175 4.175 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.109 0.891 37 H 0.108 0.892 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.113 0.887 44 H 0.234 0.766 45 H 0.107 0.893 46 H 0.087 0.913 47 H 0.036 0.964 48 H 0.037 0.963 49 H 0.217 0.783 50 H 0.064 0.936 51 H 0.087 0.913 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -25.356 18.381 -1.080 31.337 hybrid contribution 1.175 -0.417 -0.427 1.318 sum -24.181 17.964 -1.507 30.161 Atomic orbital electron populations 1.21783 0.95455 1.02018 1.01601 1.21305 0.95199 0.94622 1.03841 1.21665 0.91212 1.00253 1.03952 1.20409 0.90016 0.81987 0.75426 1.90754 1.70198 1.30362 1.47981 1.48258 1.04920 1.06233 1.74909 1.22358 0.96930 0.81800 1.01254 1.22827 0.93605 0.99226 1.01225 1.22712 0.99169 0.91249 1.03124 1.21484 0.83010 0.97367 0.97130 0.88032 1.20752 0.82380 0.79574 0.87969 1.90698 1.59165 1.43673 1.46125 1.45619 1.06839 1.59851 1.23695 1.21897 0.94600 0.94787 0.87397 0.88637 1.23447 0.95629 0.95924 1.02758 1.22795 0.95212 0.95725 0.99363 0.89482 1.20635 0.91275 0.91905 0.92703 1.42360 1.29593 1.48956 1.16669 1.19294 1.00859 1.16958 0.99744 0.91191 1.24750 0.99516 1.00520 0.96456 1.69674 1.41260 1.40237 1.07096 0.86115 0.83060 0.79680 0.77344 1.20588 1.21898 1.21923 1.23299 0.94347 0.98665 1.01206 0.92335 0.92727 0.92788 0.91203 0.91011 0.89051 0.89214 0.90101 0.91157 0.90033 0.89271 0.89851 0.88733 0.76597 0.89265 0.91289 0.96437 0.96251 0.78328 0.93619 0.91311 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.64 16 2 C -0.11 -1.04 5.22 -26.73 -0.14 -1.18 16 3 C -0.13 -1.10 4.71 -27.88 -0.13 -1.24 16 4 C 0.53 6.75 7.01 -10.98 -0.08 6.68 16 5 O -0.52 -9.15 15.26 -8.55 -0.13 -9.28 16 6 N -0.61 -6.19 2.84 -164.32 -0.47 -6.65 16 7 C 0.10 0.57 6.69 -2.53 -0.02 0.55 16 8 C -0.13 -0.53 7.09 -24.45 -0.17 -0.70 16 9 C -0.12 -0.71 6.41 -24.76 -0.16 -0.87 16 10 C 0.12 1.19 3.25 -68.10 -0.22 0.97 16 11 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 12 C 0.51 6.96 6.67 -10.98 -0.07 6.89 16 13 O -0.52 -9.40 14.67 -8.55 -0.13 -9.52 16 14 N -0.71 -8.56 5.19 -53.01 -0.28 -8.84 16 15 C 0.12 1.62 4.30 -67.11 -0.29 1.33 16 16 H 0.10 1.40 7.50 -51.93 -0.39 1.01 16 17 C -0.14 -2.27 7.45 -25.78 -0.19 -2.46 16 18 C -0.11 -1.81 3.64 -89.67 -0.33 -2.13 16 19 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 20 C 0.16 3.33 6.10 -4.04 -0.02 3.30 16 21 N -0.73 -19.13 5.60 -59.91 -0.34 -19.46 16 22 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.96 7.83 -52.48 -0.41 1.55 16 24 C -0.02 -0.50 5.50 -17.43 -0.10 -0.59 16 25 N -0.93 -29.05 13.06 55.49 0.72 -28.32 16 26 Si 0.91 22.98 29.55 -169.99 -5.02 17.95 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 29 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 30 C -0.14 -1.70 7.38 -25.92 -0.19 -1.89 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.09 0.52 7.85 -51.93 -0.41 0.12 16 38 H 0.08 0.30 7.48 -51.93 -0.39 -0.09 16 39 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 41 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 42 H 0.08 0.50 7.84 -51.93 -0.41 0.10 16 43 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.40 3.84 8.68 -40.82 -0.35 3.48 16 45 H 0.09 1.49 7.91 -51.93 -0.41 1.08 16 46 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.02 0.41 7.85 -51.93 -0.41 0.00 16 49 H 0.38 10.56 7.67 -40.82 -0.31 10.25 16 50 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 51 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 52 H 0.09 1.11 8.10 -51.93 -0.42 0.69 16 LS Contribution 417.88 15.07 6.30 6.30 Total: -1.00 -38.29 417.88 -10.61 -48.90 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -9.38 Total: 7.92 kcal Atomic # 6 Polarization: 2.91 SS G_CDS: -1.89 Total: 1.02 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -0.35 Total: -63.28 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.26 Total: -18.81 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -38.29 -10.61 -48.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485705564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.204 kcal (2) G-P(sol) polarization free energy of solvation -38.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds