Wall clock time and date at job start Tue Mar 31 2020 19:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47042 * 2 1 4 4 C 1.50704 * 109.46830 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00146 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99733 * 179.97438 * 4 3 2 7 7 C 1.47427 * 125.65055 * 0.04052 * 6 4 3 8 8 C 1.54909 * 104.83422 * 204.09032 * 7 6 4 9 9 C 1.55407 * 101.66736 * 323.08074 * 8 7 6 10 10 C 1.47021 * 125.64624 * 179.97438 * 6 4 3 11 11 H 1.08999 * 109.88569 * 59.40985 * 10 6 4 12 12 C 1.50700 * 109.88387 * 298.39414 * 10 6 4 13 13 O 1.21279 * 120.00113 * 0.31676 * 12 10 6 14 14 N 1.34784 * 119.99961 * 180.31444 * 12 10 6 15 15 C 1.46494 * 119.99635 * 180.02562 * 14 12 10 16 16 H 1.09000 * 112.85565 * 334.66170 * 15 14 12 17 17 C 1.53785 * 113.61451 * 105.86837 * 15 14 12 18 18 C 1.54048 * 86.98663 * 89.15971 * 17 15 14 19 19 H 1.09003 * 113.60898 * 270.88759 * 18 17 15 20 20 C 1.52998 * 113.69493 * 139.99333 * 18 17 15 21 21 N 1.46500 * 109.47413 * 87.46424 * 20 18 17 22 22 C 1.36935 * 120.00351 * 179.97438 * 21 20 18 23 23 H 1.08008 * 119.99621 * 0.02562 * 22 21 20 24 24 C 1.38807 * 120.00420 * 179.97438 * 22 21 20 25 25 N 1.31624 * 119.99843 * 0.02562 * 24 22 21 26 26 Si 1.86792 * 120.00450 * 179.97438 * 24 22 21 27 27 H 1.48502 * 109.47107 * 0.02562 * 26 24 22 28 28 H 1.48503 * 109.47288 * 119.99985 * 26 24 22 29 29 H 1.48501 * 109.47365 * 240.00617 * 26 24 22 30 30 C 1.53777 * 87.08039 * 25.43225 * 18 17 15 31 31 H 1.09003 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46736 * 300.00002 * 1 2 3 33 33 H 1.08994 * 109.47254 * 59.99598 * 1 2 3 34 34 H 1.09000 * 109.46736 * 239.99998 * 2 1 3 35 35 H 1.09003 * 109.47010 * 120.00391 * 2 1 3 36 36 H 1.09000 * 109.47357 * 60.00378 * 3 2 1 37 37 H 1.09003 * 109.47537 * 300.00068 * 3 2 1 38 38 H 1.08998 * 110.36681 * 322.93362 * 7 6 4 39 39 H 1.09011 * 110.36462 * 85.14566 * 7 6 4 40 40 H 1.09000 * 111.00034 * 81.06483 * 8 7 6 41 41 H 1.08999 * 111.00641 * 204.87917 * 8 7 6 42 42 H 1.09004 * 110.69024 * 277.04345 * 9 8 7 43 43 H 1.08997 * 110.85596 * 153.70231 * 9 8 7 44 44 H 0.96995 * 120.00015 * 359.72695 * 14 12 10 45 45 H 1.09000 * 113.61017 * 203.66593 * 17 15 14 46 46 H 1.08996 * 113.61117 * 334.56058 * 17 15 14 47 47 H 1.08999 * 109.47007 * 207.46162 * 20 18 17 48 48 H 1.09002 * 109.47309 * 327.46123 * 20 18 17 49 49 H 0.97001 * 119.99737 * 0.02562 * 21 20 18 50 50 H 0.96991 * 120.00091 * 179.97438 * 25 24 22 51 51 H 1.09000 * 113.61770 * 220.02836 * 30 18 17 52 52 H 1.09000 * 113.61327 * 89.11909 * 30 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5471 1.4424 -0.0006 5 8 4.1534 0.3921 -0.0015 6 7 4.2209 2.6096 -0.0013 7 6 3.6131 3.9527 -0.0006 8 6 4.6943 4.8777 -0.6129 9 6 5.9985 4.2648 -0.0308 10 6 5.6840 2.7542 -0.0014 11 1 6.1042 2.2712 -0.8835 12 6 6.2604 2.1347 1.2456 13 8 5.5267 1.6142 2.0590 14 7 7.5914 2.1589 1.4568 15 6 8.1517 1.5561 2.6688 16 1 7.4396 1.5232 3.4933 17 6 8.8657 0.2175 2.4175 18 6 10.1451 1.0393 2.1705 19 1 10.2731 1.3466 1.1326 20 6 11.4061 0.4068 2.7627 21 7 11.9866 -0.5253 1.7930 22 6 13.1287 -1.2137 2.1039 23 1 13.6013 -1.0699 3.0644 24 6 13.6784 -2.0972 1.1853 25 7 13.1022 -2.2729 0.0150 26 14 15.2368 -3.0359 1.6092 27 1 15.6836 -2.6622 2.9752 28 1 14.9648 -4.4949 1.5596 29 1 16.3006 -2.6970 0.6300 30 6 9.5242 2.1271 3.0628 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8900 36 1 1.6768 1.9563 0.8900 37 1 1.6767 1.9564 -0.8900 38 1 2.7132 3.9621 -0.6155 39 1 3.3789 4.2626 1.0180 40 1 4.6889 4.8179 -1.7012 41 1 4.5623 5.9070 -0.2796 42 1 6.1842 4.6395 0.9759 43 1 6.8479 4.4696 -0.6824 44 1 8.1785 2.5716 0.8044 45 1 8.9201 -0.4206 3.2995 46 1 8.5064 -0.3098 1.5338 47 1 12.1301 1.1880 2.9941 48 1 11.1485 -0.1316 3.6749 49 1 11.5623 -0.6541 0.9302 50 1 13.4865 -2.8900 -0.6271 51 1 9.6961 3.1404 2.6997 52 1 9.7584 2.0101 4.1209 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485705564.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:03 Heat of formation + Delta-G solvation = -74.121718 kcal Electronic energy + Delta-G solvation = -29558.068127 eV Core-core repulsion = 25556.921850 eV Total energy + Delta-G solvation = -4001.146277 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.86427 -40.72929 -39.37976 -38.14426 -36.35971 -35.33248 -34.54450 -32.97007 -32.52617 -30.70042 -28.75971 -28.35886 -26.67577 -25.54326 -24.88275 -23.35736 -22.75515 -22.60518 -21.56917 -20.39816 -20.04007 -19.09156 -18.62663 -18.14930 -17.10560 -17.00772 -16.71926 -16.61565 -16.12418 -15.84930 -15.63201 -15.48221 -15.12508 -15.00505 -14.69279 -14.51393 -14.24910 -14.17042 -13.82255 -13.73489 -13.44964 -13.28022 -13.14479 -12.96642 -12.92346 -12.79394 -12.67533 -12.62987 -12.24299 -12.14065 -11.97440 -11.95705 -11.81181 -11.75403 -11.66957 -11.39495 -11.19103 -10.98259 -10.90470 -10.87530 -10.06630 -9.71569 -9.00375 -7.97083 -5.25866 1.44740 1.46441 1.51485 1.56486 1.57988 1.89540 2.27410 2.54236 3.35644 3.38980 3.49713 3.55161 3.57239 3.77953 3.79717 3.89760 3.91736 3.95336 4.04494 4.12101 4.21099 4.29561 4.49476 4.51550 4.54987 4.63541 4.67533 4.71656 4.77453 4.79484 4.81948 4.86641 4.87345 4.89149 4.92174 4.95377 5.08404 5.11351 5.19522 5.22884 5.23510 5.25845 5.32841 5.34202 5.42521 5.47330 5.65079 6.25645 6.44162 6.54094 7.15485 7.25241 7.31036 8.08999 8.31134 9.26921 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014847 B = 0.002140 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.436268 B =13077.936478 C =14012.999967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C -0.122 4.122 4 C 0.517 3.483 5 O -0.586 6.586 6 N -0.609 5.609 7 C 0.090 3.910 8 C -0.119 4.119 9 C -0.116 4.116 10 C 0.112 3.888 11 H 0.096 0.904 12 C 0.502 3.498 13 O -0.572 6.572 14 N -0.698 5.698 15 C 0.128 3.872 16 H 0.086 0.914 17 C -0.148 4.148 18 C -0.107 4.107 19 H 0.087 0.913 20 C 0.159 3.841 21 N -0.746 5.746 22 C -0.244 4.244 23 H 0.077 0.923 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.264 1.264 28 H -0.295 1.295 29 H -0.291 1.291 30 C -0.109 4.109 31 H 0.055 0.945 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.038 0.962 36 H 0.108 0.892 37 H 0.125 0.875 38 H 0.107 0.893 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.083 0.917 43 H 0.117 0.883 44 H 0.414 0.586 45 H 0.080 0.920 46 H 0.039 0.961 47 H 0.027 0.973 48 H 0.018 0.982 49 H 0.372 0.628 50 H 0.251 0.749 51 H 0.100 0.900 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.792 23.012 -1.726 34.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.151 4.151 3 C -0.161 4.161 4 C 0.308 3.692 5 O -0.465 6.465 6 N -0.343 5.343 7 C -0.031 4.031 8 C -0.157 4.157 9 C -0.155 4.155 10 C 0.004 3.996 11 H 0.113 0.887 12 C 0.288 3.712 13 O -0.450 6.450 14 N -0.350 5.350 15 C 0.022 3.978 16 H 0.104 0.896 17 C -0.187 4.187 18 C -0.126 4.126 19 H 0.105 0.895 20 C 0.033 3.967 21 N -0.388 5.388 22 C -0.376 4.376 23 H 0.095 0.905 24 C -0.273 4.273 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.189 1.189 28 H -0.223 1.223 29 H -0.218 1.218 30 C -0.147 4.147 31 H 0.074 0.926 32 H 0.083 0.917 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.127 0.873 37 H 0.143 0.857 38 H 0.125 0.875 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.133 0.867 42 H 0.102 0.898 43 H 0.135 0.865 44 H 0.251 0.749 45 H 0.099 0.901 46 H 0.058 0.942 47 H 0.045 0.955 48 H 0.036 0.964 49 H 0.203 0.797 50 H 0.059 0.941 51 H 0.118 0.882 52 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -25.931 21.993 -1.003 34.016 hybrid contribution 1.335 -1.509 -0.406 2.055 sum -24.596 20.483 -1.409 32.040 Atomic orbital electron populations 1.21732 0.92906 1.02418 1.03010 1.21274 0.97297 0.95095 1.01408 1.21705 0.88205 0.99908 1.06302 1.21260 0.91763 0.81795 0.74341 1.90714 1.71725 1.32869 1.51236 1.48474 1.05246 1.07383 1.73173 1.22726 0.98479 0.79642 1.02297 1.22867 0.91323 0.99847 1.01672 1.22785 1.01136 0.87548 1.03982 1.21692 0.83184 1.00194 0.94541 0.88673 1.21527 0.82386 0.78692 0.88561 1.90671 1.60345 1.45860 1.48148 1.45554 1.06826 1.59147 1.23513 1.21713 0.95076 0.93248 0.87789 0.89553 1.23482 0.96965 0.97147 1.01143 1.22709 0.92826 0.97018 1.00048 0.89519 1.20835 0.92985 0.91142 0.91698 1.42610 1.29230 1.49806 1.17200 1.19723 1.01444 1.16673 0.99784 0.90539 1.25632 1.03067 1.02045 0.96552 1.69837 1.43014 1.41245 1.08197 0.85029 0.79038 0.77690 0.77748 1.18864 1.22251 1.21754 1.23183 0.91530 0.98832 1.01142 0.92551 0.91690 0.90867 0.92990 0.94299 0.87334 0.85690 0.87451 0.90931 0.89007 0.86655 0.89816 0.86457 0.74910 0.90129 0.94225 0.95475 0.96447 0.79695 0.94055 0.88166 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.04 16 2 C -0.11 -2.20 5.22 30.59 0.16 -2.04 16 3 C -0.12 -1.96 4.71 29.85 0.14 -1.82 16 4 C 0.52 13.55 7.01 87.66 0.61 14.16 16 5 O -0.59 -22.43 15.26 10.48 0.16 -22.27 16 6 N -0.61 -12.02 2.84 -792.17 -2.25 -14.27 16 7 C 0.09 0.78 6.69 86.85 0.58 1.36 16 8 C -0.12 -0.50 7.09 32.07 0.23 -0.27 16 9 C -0.12 -1.01 6.41 31.87 0.20 -0.81 16 10 C 0.11 2.20 3.25 44.60 0.15 2.34 16 11 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 12 C 0.50 14.02 6.67 87.66 0.58 14.61 16 13 O -0.57 -21.60 14.67 10.47 0.15 -21.45 16 14 N -0.70 -16.69 5.19 -440.02 -2.29 -18.97 16 15 C 0.13 3.46 4.30 45.52 0.20 3.66 16 16 H 0.09 2.57 7.50 -2.39 -0.02 2.55 16 17 C -0.15 -5.05 7.45 31.21 0.23 -4.81 16 18 C -0.11 -3.41 3.64 -10.18 -0.04 -3.44 16 19 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 20 C 0.16 6.48 6.10 86.38 0.53 7.01 16 21 N -0.75 -39.54 5.60 -343.45 -1.92 -41.47 16 22 C -0.24 -14.16 9.99 84.03 0.84 -13.32 16 23 H 0.08 4.24 7.83 -2.91 -0.02 4.22 16 24 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 25 N -0.97 -61.75 13.06 21.65 0.28 -61.47 16 26 Si 0.98 47.58 29.55 68.60 2.03 49.61 16 27 H -0.26 -12.03 7.11 99.48 0.71 -11.33 16 28 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 29 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 30 C -0.11 -2.45 7.38 31.12 0.23 -2.22 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 35 H 0.04 0.99 8.10 -2.39 -0.02 0.97 16 36 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.13 1.11 7.85 -2.39 -0.02 1.09 16 38 H 0.11 0.37 7.48 -2.39 -0.02 0.36 16 39 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 41 H 0.12 -0.03 8.14 -2.39 -0.02 -0.04 16 42 H 0.08 0.76 7.84 -2.39 -0.02 0.75 16 43 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 44 H 0.41 7.42 8.68 -92.71 -0.80 6.62 16 45 H 0.08 2.83 7.91 -2.39 -0.02 2.81 16 46 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 48 H 0.02 0.73 7.85 -2.39 -0.02 0.71 16 49 H 0.37 21.10 7.67 -92.71 -0.71 20.39 16 50 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.10 1.72 8.14 -2.39 -0.02 1.71 16 52 H 0.11 2.22 8.10 -2.39 -0.02 2.20 16 Total: -1.00 -89.01 417.88 1.38 -87.63 By element: Atomic # 1 Polarization: 34.29 SS G_CDS: -0.61 Total: 33.68 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: 5.83 Total: 8.98 kcal Atomic # 7 Polarization: -130.00 SS G_CDS: -6.18 Total: -136.18 kcal Atomic # 8 Polarization: -44.03 SS G_CDS: 0.31 Total: -43.72 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -89.01 1.38 -87.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485705564.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.512 kcal (2) G-P(sol) polarization free energy of solvation -89.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds