Wall clock time and date at job start Tue Mar 31 2020 19:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47194 * 2 1 4 4 C 1.50700 * 109.47364 * 179.97438 * 3 2 1 5 5 O 1.21279 * 119.99603 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00360 * 179.97438 * 4 3 2 7 7 C 1.47428 * 125.64808 * 359.95253 * 6 4 3 8 8 C 1.54903 * 104.83509 * 155.91435 * 7 6 4 9 9 C 1.55163 * 101.58249 * 37.00423 * 8 7 6 10 10 C 1.47023 * 125.65147 * 179.97438 * 6 4 3 11 11 H 1.09001 * 110.01155 * 300.51435 * 10 6 4 12 12 C 1.50701 * 109.87739 * 61.60093 * 10 6 4 13 13 O 1.21280 * 120.00269 * 359.26403 * 12 10 6 14 14 N 1.34781 * 119.99932 * 179.26068 * 12 10 6 15 15 C 1.46500 * 119.99985 * 179.97438 * 14 12 10 16 16 H 1.09002 * 112.85221 * 334.67013 * 15 14 12 17 17 C 1.53785 * 113.68813 * 105.94035 * 15 14 12 18 18 C 1.53777 * 87.08241 * 89.12417 * 17 15 14 19 19 H 1.08994 * 113.61814 * 270.88533 * 18 17 15 20 20 C 1.52998 * 113.68937 * 139.98701 * 18 17 15 21 21 N 1.46504 * 109.46908 * 87.46603 * 20 18 17 22 22 C 1.36936 * 120.00371 * 179.97438 * 21 20 18 23 23 H 1.08001 * 119.99755 * 0.02562 * 22 21 20 24 24 C 1.38810 * 120.00100 * 180.02562 * 22 21 20 25 25 N 1.31622 * 120.00097 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00041 * 0.02562 * 24 22 21 27 27 H 1.48495 * 109.46984 * 90.00278 * 26 24 22 28 28 H 1.48502 * 109.46933 * 209.99836 * 26 24 22 29 29 H 1.48499 * 109.47146 * 329.99942 * 26 24 22 30 30 C 1.53781 * 113.61339 * 203.47543 * 15 14 12 31 31 H 1.09000 * 109.47240 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47692 * 300.00519 * 1 2 3 33 33 H 1.09009 * 109.47250 * 60.00284 * 1 2 3 34 34 H 1.08995 * 109.47365 * 239.99760 * 2 1 3 35 35 H 1.09003 * 109.46606 * 119.99852 * 2 1 3 36 36 H 1.09000 * 109.47565 * 59.99890 * 3 2 1 37 37 H 1.09003 * 109.47223 * 299.99474 * 3 2 1 38 38 H 1.09002 * 110.36943 * 37.07199 * 7 6 4 39 39 H 1.09002 * 110.36270 * 274.75106 * 7 6 4 40 40 H 1.09001 * 111.00451 * 278.93374 * 8 7 6 41 41 H 1.09001 * 111.04139 * 155.09483 * 8 7 6 42 42 H 1.08995 * 110.72018 * 206.13624 * 9 8 7 43 43 H 1.08998 * 110.87059 * 82.93704 * 9 8 7 44 44 H 0.96998 * 119.99866 * 0.02562 * 14 12 10 45 45 H 1.08999 * 113.61060 * 203.67840 * 17 15 14 46 46 H 1.08997 * 113.61198 * 334.57634 * 17 15 14 47 47 H 1.08993 * 109.47595 * 207.46467 * 20 18 17 48 48 H 1.09002 * 109.47655 * 327.46970 * 20 18 17 49 49 H 0.97005 * 119.99834 * 0.02562 * 21 20 18 50 50 H 0.96995 * 119.99949 * 180.02562 * 25 24 22 51 51 H 1.09000 * 113.61578 * 25.34726 * 30 15 14 52 52 H 1.09001 * 113.61682 * 156.17306 * 30 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 8 4.1533 0.3921 0.0015 6 7 4.2209 2.6096 0.0002 7 6 3.6130 3.9528 -0.0018 8 6 4.6942 4.8783 0.6096 9 6 5.9949 4.2657 0.0262 10 6 5.6840 2.7544 0.0013 11 1 6.1056 2.2743 0.8844 12 6 6.2612 2.1330 -1.2444 13 8 5.5288 1.6047 -2.0539 14 7 7.5915 2.1645 -1.4589 15 6 8.1527 1.5600 -2.6696 16 1 7.5232 0.7700 -3.0792 17 6 8.6118 2.5876 -3.7175 18 6 9.9793 2.5769 -3.0142 19 1 10.0614 3.3059 -2.2081 20 6 11.1666 2.6205 -3.9781 21 7 11.4941 4.0147 -4.2867 22 6 12.5299 4.3033 -5.1346 23 1 13.1052 3.5030 -5.5762 24 6 12.8404 5.6243 -5.4266 25 7 13.8357 5.9017 -6.2420 26 14 11.8458 7.0085 -4.6623 27 1 12.4638 7.4084 -3.3726 28 1 11.8275 8.1724 -5.5843 29 1 10.4555 6.5450 -4.4225 30 6 9.6309 1.1594 -2.5298 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 -0.3634 0.5138 -0.8901 34 1 1.8933 -0.5138 -0.8899 35 1 1.8932 -0.5138 0.8900 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9563 -0.8900 38 1 2.7131 3.9629 0.6131 39 1 3.3807 4.2624 -1.0208 40 1 4.6887 4.8197 1.6980 41 1 4.5630 5.9075 0.2752 42 1 6.8446 4.4737 0.6764 43 1 6.1817 4.6379 -0.9811 44 1 8.1773 2.5868 -0.8113 45 1 8.6399 2.1928 -4.7331 46 1 8.0927 3.5435 -3.6482 47 1 12.0281 2.1389 -3.5155 48 1 10.9076 2.0960 -4.8978 49 1 10.9776 4.7335 -3.8898 50 1 14.0529 6.8248 -6.4458 51 1 9.9345 0.9625 -1.5016 52 1 9.9374 0.3732 -3.2197 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485705565.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:45:06 Heat of formation + Delta-G solvation = -70.340221 kcal Electronic energy + Delta-G solvation = -29668.501564 eV Core-core repulsion = 25667.519265 eV Total energy + Delta-G solvation = -4000.982299 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87767 -40.74856 -39.39326 -38.16716 -36.48945 -35.32196 -34.55225 -33.26770 -32.61094 -30.76028 -28.89794 -28.53205 -26.67917 -25.41580 -24.70436 -23.28851 -22.79620 -22.63082 -21.56618 -20.53638 -20.05804 -19.49069 -18.64040 -18.17178 -17.05601 -16.99563 -16.69864 -16.56133 -16.16967 -15.94914 -15.81075 -15.45202 -15.04384 -15.00950 -14.68633 -14.49257 -14.33707 -14.16425 -13.92604 -13.80817 -13.53304 -13.41539 -13.30871 -13.03512 -12.92851 -12.78208 -12.67752 -12.62642 -12.25437 -12.17168 -11.97698 -11.88484 -11.82020 -11.72434 -11.66517 -11.43998 -11.22976 -10.98998 -10.90931 -10.87924 -10.07554 -9.71723 -9.28098 -8.02680 -5.36167 1.36887 1.42174 1.49622 1.52920 1.56037 1.89617 2.25689 2.49001 3.27618 3.37647 3.43723 3.48689 3.55136 3.76879 3.77897 3.83651 3.92112 3.95854 4.04237 4.09183 4.09877 4.19024 4.47801 4.49845 4.53106 4.63518 4.67998 4.68764 4.75850 4.80344 4.81137 4.85668 4.86020 4.86847 4.90322 4.95592 5.05926 5.08865 5.19348 5.21473 5.23529 5.24188 5.30188 5.32570 5.42802 5.63694 5.75999 6.21335 6.43552 6.53900 7.08474 7.14679 7.25117 7.84972 8.05159 9.19033 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018786 B = 0.002235 C = 0.002084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.125472 B =12523.384842 C =13429.360836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.110 4.110 3 C -0.125 4.125 4 C 0.521 3.479 5 O -0.581 6.581 6 N -0.609 5.609 7 C 0.090 3.910 8 C -0.120 4.120 9 C -0.122 4.122 10 C 0.116 3.884 11 H 0.108 0.892 12 C 0.502 3.498 13 O -0.572 6.572 14 N -0.697 5.697 15 C 0.124 3.876 16 H 0.078 0.922 17 C -0.141 4.141 18 C -0.108 4.108 19 H 0.101 0.899 20 C 0.162 3.838 21 N -0.756 5.756 22 C -0.238 4.238 23 H 0.052 0.948 24 C -0.069 4.069 25 N -0.986 5.986 26 Si 0.961 3.039 27 H -0.273 1.273 28 H -0.297 1.297 29 H -0.251 1.251 30 C -0.119 4.119 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.061 0.939 34 H 0.040 0.960 35 H 0.056 0.944 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.066 0.934 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.119 0.881 43 H 0.073 0.927 44 H 0.415 0.585 45 H 0.081 0.919 46 H 0.060 0.940 47 H 0.027 0.973 48 H 0.020 0.980 49 H 0.367 0.633 50 H 0.258 0.742 51 H 0.093 0.907 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.516 -3.323 22.382 36.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.148 4.148 3 C -0.164 4.164 4 C 0.312 3.688 5 O -0.461 6.461 6 N -0.343 5.343 7 C -0.031 4.031 8 C -0.158 4.158 9 C -0.160 4.160 10 C 0.008 3.992 11 H 0.125 0.875 12 C 0.288 3.712 13 O -0.450 6.450 14 N -0.350 5.350 15 C 0.018 3.982 16 H 0.096 0.904 17 C -0.180 4.180 18 C -0.127 4.127 19 H 0.119 0.881 20 C 0.036 3.964 21 N -0.402 5.402 22 C -0.369 4.369 23 H 0.070 0.930 24 C -0.260 4.260 25 N -0.636 5.636 26 Si 0.788 3.212 27 H -0.199 1.199 28 H -0.224 1.224 29 H -0.175 1.175 30 C -0.157 4.157 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.080 0.920 34 H 0.059 0.941 35 H 0.075 0.925 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.252 0.748 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.045 0.955 48 H 0.038 0.962 49 H 0.200 0.800 50 H 0.066 0.934 51 H 0.111 0.889 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -28.626 -4.411 21.675 36.176 hybrid contribution 0.590 0.745 -0.377 1.022 sum -28.036 -3.666 21.297 35.398 Atomic orbital electron populations 1.21742 0.93188 1.02442 1.02864 1.21256 0.97071 0.94892 1.01605 1.21719 0.88498 1.00097 1.06120 1.21159 0.91598 0.81745 0.74299 1.90678 1.71622 1.32537 1.51226 1.48470 1.05339 1.07273 1.73209 1.22687 0.98528 0.79902 1.02024 1.22820 0.91437 0.99649 1.01892 1.22746 1.01287 0.88372 1.03559 1.21672 0.83085 0.99528 0.94936 0.87463 1.21536 0.82416 0.78767 0.88514 1.90683 1.60296 1.45589 1.48445 1.45528 1.06949 1.59084 1.23433 1.21699 0.94887 0.95634 0.85980 0.90420 1.23416 0.96378 0.99492 0.98686 1.22721 0.93184 0.98609 0.98161 0.88067 1.20800 0.95254 0.84640 0.95713 1.42683 1.37578 1.03803 1.56092 1.19069 1.06523 0.92565 1.18753 0.92960 1.25598 0.99831 0.99934 1.00604 1.69904 1.33263 1.18900 1.41560 0.85314 0.79571 0.78474 0.77854 1.19884 1.22428 1.17529 1.23218 0.92656 0.96491 1.03383 0.92389 0.90952 0.92020 0.94149 0.92540 0.85768 0.87808 0.87250 0.91553 0.88440 0.87369 0.86233 0.90866 0.74766 0.90022 0.92081 0.95541 0.96201 0.80016 0.93351 0.88868 0.88176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.11 -1.85 5.22 30.59 0.16 -1.69 16 3 C -0.12 -1.77 4.71 29.85 0.14 -1.63 16 4 C 0.52 12.12 7.01 87.66 0.61 12.73 16 5 O -0.58 -19.47 15.24 10.84 0.17 -19.30 16 6 N -0.61 -10.90 2.84 -792.20 -2.25 -13.15 16 7 C 0.09 0.79 6.69 86.85 0.58 1.37 16 8 C -0.12 -0.57 7.08 31.99 0.23 -0.35 16 9 C -0.12 -1.11 6.37 31.78 0.20 -0.90 16 10 C 0.12 1.99 3.26 44.59 0.15 2.14 16 11 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 12 C 0.50 12.77 6.68 87.66 0.59 13.35 16 13 O -0.57 -20.44 14.64 10.84 0.16 -20.28 16 14 N -0.70 -14.65 5.20 -440.02 -2.29 -16.93 16 15 C 0.12 3.06 4.30 45.52 0.20 3.25 16 16 H 0.08 2.29 7.50 -2.39 -0.02 2.27 16 17 C -0.14 -3.87 7.44 31.12 0.23 -3.64 16 18 C -0.11 -2.90 3.64 -10.27 -0.04 -2.94 16 19 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 20 C 0.16 6.02 6.10 86.38 0.53 6.55 16 21 N -0.76 -35.16 5.41 -343.45 -1.86 -37.01 16 22 C -0.24 -13.79 10.47 84.03 0.88 -12.91 16 23 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 24 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 25 N -0.99 -63.77 13.97 21.65 0.30 -63.46 16 26 Si 0.96 45.00 27.74 68.60 1.90 46.91 16 27 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 28 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 29 H -0.25 -10.50 6.52 99.48 0.65 -9.85 16 30 C -0.12 -2.58 7.38 31.12 0.23 -2.35 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 34 H 0.04 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.06 1.06 8.10 -2.39 -0.02 1.04 16 36 H 0.12 0.89 7.85 -2.39 -0.02 0.87 16 37 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.11 0.35 7.48 -2.39 -0.02 0.33 16 39 H 0.07 0.67 8.14 -2.39 -0.02 0.66 16 40 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 41 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 42 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.07 0.88 7.84 -2.39 -0.02 0.86 16 44 H 0.42 6.00 8.67 -92.71 -0.80 5.20 16 45 H 0.08 2.41 7.90 -2.39 -0.02 2.39 16 46 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 48 H 0.02 0.78 7.85 -2.39 -0.02 0.76 16 49 H 0.37 15.99 5.53 -92.70 -0.51 15.48 16 50 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 51 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.10 2.14 8.10 -2.39 -0.02 2.13 16 Total: -1.00 -87.64 414.67 1.53 -86.11 By element: Atomic # 1 Polarization: 29.01 SS G_CDS: -0.47 Total: 28.54 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 5.86 Total: 8.59 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.09 Total: -130.56 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: 0.32 Total: -39.58 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.90 Total: 46.91 kcal Total: -87.64 1.53 -86.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485705565.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.770 kcal (2) G-P(sol) polarization free energy of solvation -87.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds