Wall clock time and date at job start Tue Mar 31 2020 20:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47027 * 2 1 4 4 C 1.52997 * 109.47366 * 119.99634 * 2 1 3 5 5 H 1.09000 * 115.55536 * 325.67526 * 4 2 1 6 6 C 1.53082 * 117.49007 * 111.39838 * 4 2 1 7 7 C 1.53003 * 117.49969 * 179.97438 * 4 2 1 8 8 H 1.09002 * 117.49645 * 0.02562 * 7 4 2 9 9 C 1.50701 * 117.49822 * 145.02708 * 7 4 2 10 10 O 1.21279 * 119.99762 * 359.91495 * 9 7 4 11 11 N 1.34777 * 119.99836 * 179.91439 * 9 7 4 12 12 C 1.46498 * 119.99484 * 179.97438 * 11 9 7 13 13 C 1.53008 * 109.46794 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.85090 * 43.79900 * 13 12 11 15 15 C 1.53775 * 113.61706 * 175.00288 * 13 12 11 16 16 C 1.53778 * 87.08102 * 89.19767 * 15 13 12 17 17 H 1.09002 * 113.61825 * 270.79667 * 16 15 13 18 18 N 1.46901 * 113.61096 * 139.98334 * 16 15 13 19 19 C 1.46902 * 110.99844 * 156.52804 * 18 16 15 20 20 C 1.50702 * 109.47027 * 179.97438 * 19 18 16 21 21 O 1.21293 * 120.00255 * 0.02562 * 20 19 18 22 22 N 1.34777 * 119.99928 * 179.72353 * 20 19 18 23 23 C 1.37101 * 120.00327 * 180.27606 * 22 20 19 24 24 H 1.08001 * 119.99426 * 0.02562 * 23 22 20 25 25 C 1.38942 * 120.00412 * 180.02562 * 23 22 20 26 26 N 1.31414 * 120.00005 * 0.02562 * 25 23 22 27 27 Si 1.86803 * 120.00057 * 179.97438 * 25 23 22 28 28 H 1.48498 * 109.46646 * 60.00463 * 27 25 23 29 29 H 1.48504 * 109.47036 * 180.02562 * 27 25 23 30 30 H 1.48501 * 109.47259 * 300.00225 * 27 25 23 31 31 C 1.53774 * 87.17316 * 25.39111 * 16 15 13 32 32 H 1.09006 * 109.47180 * 299.99897 * 1 2 3 33 33 H 1.09000 * 109.47655 * 59.99589 * 1 2 3 34 34 H 1.09005 * 109.46996 * 180.02562 * 1 2 3 35 35 H 1.08995 * 109.47035 * 240.00614 * 2 1 3 36 36 H 1.09006 * 109.47056 * 60.00027 * 3 2 1 37 37 H 1.08999 * 109.47320 * 180.02562 * 3 2 1 38 38 H 1.09000 * 109.47239 * 300.00666 * 3 2 1 39 39 H 1.09000 * 117.49558 * 0.02562 * 6 4 2 40 40 H 1.09003 * 117.51450 * 214.96700 * 6 4 2 41 41 H 0.96997 * 119.99939 * 0.02562 * 11 9 7 42 42 H 1.09003 * 109.47133 * 60.00792 * 12 11 9 43 43 H 1.08996 * 109.47628 * 300.00012 * 12 11 9 44 44 H 1.09001 * 113.61116 * 334.65410 * 15 13 12 45 45 H 1.08992 * 113.69291 * 203.75829 * 15 13 12 46 46 H 1.00902 * 111.00235 * 32.58041 * 18 16 15 47 47 H 1.09004 * 109.47131 * 60.00016 * 19 18 16 48 48 H 1.09000 * 109.47732 * 300.00127 * 19 18 16 49 49 H 0.97000 * 120.00317 * 0.28382 * 22 20 19 50 50 H 0.96996 * 120.00330 * 179.97438 * 26 25 23 51 51 H 1.09007 * 113.61372 * 89.16085 * 31 16 15 52 52 H 1.09003 * 113.61211 * 220.05498 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.4311 -0.5979 2.1449 6 6 2.7427 -2.0666 1.0510 7 6 3.5551 -0.8285 1.4340 8 1 4.1884 -0.3849 0.6656 9 6 4.0915 -0.7557 2.8404 10 8 3.3295 -0.6154 3.7734 11 7 5.4179 -0.8465 3.0613 12 6 5.9393 -0.7752 4.4285 13 6 7.4638 -0.9026 4.4001 14 1 7.9238 -0.3060 3.6123 15 6 8.1231 -0.7182 5.7771 16 6 7.9490 -2.2331 5.9759 17 1 6.9961 -2.5075 6.4285 18 7 9.0969 -2.8766 6.6287 19 6 8.6959 -4.1286 7.2842 20 6 9.8970 -4.7589 7.9408 21 8 10.9804 -4.2182 7.8702 22 7 9.7661 -5.9205 8.6118 23 6 10.8576 -6.4911 9.2140 24 1 11.8223 -6.0095 9.1510 25 6 10.7229 -7.6888 9.9053 26 7 9.5492 -8.2750 9.9815 27 14 12.2103 -8.4665 10.7251 28 1 12.7649 -7.5298 11.7352 29 1 11.8041 -9.7300 11.3914 30 1 13.2444 -8.7583 9.7001 31 6 7.9619 -2.3587 4.4433 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5137 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 3.1300 1.4426 -0.0005 38 1 1.6765 1.9564 -0.8899 39 1 2.8417 -2.4372 0.0308 40 1 2.5960 -2.8289 1.8163 41 1 6.0273 -0.9584 2.3149 42 1 5.5175 -1.5871 5.0210 43 1 5.6632 0.1807 4.8733 44 1 7.5317 -0.1165 6.4673 45 1 9.1647 -0.4015 5.7251 46 1 9.5377 -2.2499 7.2852 47 1 8.2875 -4.8133 6.5409 48 1 7.9380 -3.9173 8.0386 49 1 8.8997 -6.3529 8.6686 50 1 9.4551 -9.1113 10.4637 51 1 8.9594 -2.4916 4.0244 52 1 7.2406 -3.0795 4.0582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488869014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:49 Heat of formation + Delta-G solvation = -47.578557 kcal Electronic energy + Delta-G solvation = -27929.897341 eV Core-core repulsion = 23929.902061 eV Total energy + Delta-G solvation = -3999.995279 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.52193 -39.52154 -38.12771 -37.76284 -35.01933 -34.02585 -33.74353 -33.15302 -31.18921 -28.39790 -27.60164 -26.48522 -25.78265 -24.52715 -23.76428 -23.25631 -22.33436 -20.63288 -20.12780 -19.36007 -18.83926 -17.86120 -17.46168 -16.75974 -16.21452 -15.69326 -15.47977 -15.32655 -15.09143 -14.86985 -14.61335 -14.33649 -14.24628 -13.93311 -13.57058 -13.47019 -13.34732 -12.98740 -12.86623 -12.78024 -12.60488 -12.40556 -12.20984 -11.76108 -11.65981 -11.60451 -11.56425 -11.51199 -11.12210 -11.02768 -10.97685 -10.68903 -10.56730 -10.49094 -10.43453 -10.34224 -10.19589 -10.04350 -9.48853 -9.33475 -8.42579 -8.05310 -7.94479 -6.40289 -3.81296 2.21321 2.79119 3.21018 3.26547 3.31002 3.41942 3.92705 4.10987 4.12553 4.30422 4.32174 4.34503 4.40799 4.54601 4.55009 4.60918 4.72420 4.77011 4.82978 4.88217 5.11244 5.14027 5.21534 5.23556 5.26407 5.29168 5.35577 5.41082 5.45670 5.48164 5.51228 5.57950 5.66274 5.72109 5.74026 5.77443 5.83923 5.84279 5.95588 5.96523 5.98990 6.08748 6.20288 6.24680 6.35068 7.20782 7.30518 7.56111 7.69176 7.95280 8.07559 8.62757 9.19031 9.55835 10.07384 10.77377 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023181 B = 0.001486 C = 0.001425 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.610620 B =18834.177529 C =19647.821777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.067 4.067 3 C -0.147 4.147 4 C -0.112 4.112 5 H 0.118 0.882 6 C -0.148 4.148 7 C -0.191 4.191 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.541 6.541 11 N -0.723 5.723 12 C 0.137 3.863 13 C -0.127 4.127 14 H 0.085 0.915 15 C -0.130 4.130 16 C 0.057 3.943 17 H 0.070 0.930 18 N -0.656 5.656 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.023 3.977 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.273 1.273 31 C -0.121 4.121 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.072 0.928 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.055 0.945 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.402 0.598 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.350 0.650 47 H 0.084 0.916 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.093 0.907 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.490 16.977 -20.966 31.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.085 4.085 3 C -0.204 4.204 4 C -0.131 4.131 5 H 0.136 0.864 6 C -0.185 4.185 7 C -0.212 4.212 8 H 0.140 0.860 9 C 0.328 3.672 10 O -0.418 6.418 11 N -0.375 5.375 12 C 0.013 3.987 13 C -0.146 4.146 14 H 0.103 0.897 15 C -0.169 4.169 16 C -0.053 4.053 17 H 0.088 0.912 18 N -0.288 5.288 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.469 6.469 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 C -0.159 4.159 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.074 0.926 39 H 0.123 0.877 40 H 0.118 0.882 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.170 0.830 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.112 0.888 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -16.129 16.939 -20.765 31.278 hybrid contribution 0.107 -0.544 0.931 1.084 sum -16.023 16.395 -19.834 30.313 Atomic orbital electron populations 1.21808 0.94499 1.02016 1.01944 1.20748 0.96110 0.95995 0.95684 1.21830 1.01037 0.95642 1.01902 1.22499 0.91728 0.98462 1.00382 0.86431 1.23112 1.01469 0.90890 1.03062 1.22260 0.96465 1.06661 0.95776 0.85957 1.19677 0.82040 0.75711 0.89793 1.90708 1.57267 1.49107 1.44756 1.45913 1.07254 1.74602 1.09697 1.21204 0.92154 1.02330 0.82970 1.22461 0.93644 0.99229 0.99290 0.89695 1.23171 1.01707 0.96285 0.95699 1.23088 0.93359 0.93384 0.95491 0.91235 1.60251 1.25893 1.06090 1.36617 1.21730 0.96250 0.92965 0.97379 1.19835 0.89869 0.83620 0.84068 1.90516 1.28012 1.64001 1.64327 1.41866 1.11778 1.19899 1.46493 1.19660 0.90530 1.04221 1.28606 0.87985 1.25258 0.98011 0.96754 0.97874 1.69605 1.22960 1.18905 1.42861 0.85916 0.80852 0.78129 0.79303 1.19921 1.20978 1.19891 1.23161 1.01964 0.94380 0.96382 0.92423 0.92525 0.92421 0.91009 0.92401 0.92693 0.92604 0.87731 0.88169 0.76373 0.91117 0.91287 0.91293 0.88633 0.82972 0.89732 0.93901 0.77463 0.91830 0.88798 0.91769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.18 37.16 0.34 -0.40 16 2 C -0.07 -0.36 3.07 -90.62 -0.28 -0.64 16 3 C -0.15 -0.78 9.03 37.16 0.34 -0.45 16 4 C -0.11 -0.79 4.67 -90.58 -0.42 -1.21 16 5 H 0.12 1.07 7.64 -51.93 -0.40 0.67 16 6 C -0.15 -0.94 9.88 -26.71 -0.26 -1.21 16 7 C -0.19 -1.33 5.39 -91.79 -0.49 -1.83 16 8 H 0.12 0.61 7.61 -51.93 -0.40 0.21 16 9 C 0.54 5.42 7.61 -10.98 -0.08 5.34 16 10 O -0.54 -7.66 16.26 5.56 0.09 -7.57 16 11 N -0.72 -5.84 5.56 -60.29 -0.33 -6.18 16 12 C 0.14 1.24 5.35 -4.04 -0.02 1.22 16 13 C -0.13 -1.06 3.94 -89.72 -0.35 -1.41 16 14 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 15 C -0.13 -1.26 7.26 -25.92 -0.19 -1.45 16 16 C 0.06 0.69 3.77 -66.91 -0.25 0.44 16 17 H 0.07 0.84 7.46 -51.93 -0.39 0.45 16 18 N -0.66 -10.53 6.18 -107.13 -0.66 -11.19 16 19 C 0.05 0.89 6.02 -4.97 -0.03 0.86 16 20 C 0.44 10.55 7.82 -10.98 -0.09 10.46 16 21 O -0.58 -16.01 15.78 5.55 0.09 -15.93 16 22 N -0.56 -14.50 5.29 -10.96 -0.06 -14.55 16 23 C -0.30 -8.48 9.68 -14.93 -0.14 -8.63 16 24 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 26 N -0.90 -24.76 13.05 55.50 0.72 -24.03 16 27 Si 0.93 21.20 29.55 -169.99 -5.02 16.18 16 28 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 29 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 30 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 31 C -0.12 -1.27 7.43 -25.83 -0.19 -1.46 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.34 7.90 -51.93 -0.41 -0.07 16 36 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 37 H 0.05 0.28 7.29 -51.93 -0.38 -0.09 16 38 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.10 0.48 8.05 -51.93 -0.42 0.06 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.40 2.24 8.47 -40.82 -0.35 1.90 16 42 H 0.07 0.75 7.40 -51.93 -0.38 0.37 16 43 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 46 H 0.35 5.79 8.26 -39.29 -0.32 5.46 16 47 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.74 16 51 H 0.09 1.09 8.14 -51.92 -0.42 0.66 16 52 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 425.92 15.07 6.42 6.42 Total: -1.00 -33.33 425.92 -10.18 -43.51 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: -9.19 Total: 13.18 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -2.23 Total: 0.16 kcal Atomic # 7 Polarization: -55.62 SS G_CDS: -0.33 Total: -55.95 kcal Atomic # 8 Polarization: -23.67 SS G_CDS: 0.18 Total: -23.49 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -33.33 -10.18 -43.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488869014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.072 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds