Wall clock time and date at job start Tue Mar 31 2020 20:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.52996 * 109.47080 * 119.99480 * 2 1 3 5 5 H 1.09001 * 115.56509 * 274.31566 * 4 2 1 6 6 C 1.53077 * 117.49326 * 128.60260 * 4 2 1 7 7 C 1.52999 * 59.98301 * 252.51596 * 6 4 2 8 8 H 1.08999 * 117.49574 * 107.50240 * 7 6 4 9 9 C 1.50697 * 117.49743 * 252.49474 * 7 6 4 10 10 O 1.21290 * 120.00071 * 68.74976 * 9 7 6 11 11 N 1.34783 * 120.00410 * 248.74972 * 9 7 6 12 12 C 1.46499 * 120.00229 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47051 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.84568 * 43.80632 * 13 12 11 15 15 C 1.53779 * 113.61424 * 174.99786 * 13 12 11 16 16 C 1.53787 * 87.07963 * 89.20141 * 15 13 12 17 17 H 1.08994 * 113.61447 * 270.88515 * 16 15 13 18 18 N 1.46897 * 113.61213 * 139.98051 * 16 15 13 19 19 C 1.46903 * 111.00106 * 155.00606 * 18 16 15 20 20 C 1.50694 * 109.47135 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00398 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99670 * 179.97438 * 20 19 18 23 23 C 1.37106 * 120.00079 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99778 * 0.02562 * 23 22 20 25 25 C 1.38948 * 120.00047 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00300 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99816 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47253 * 60.00309 * 27 25 23 29 29 H 1.48504 * 109.47410 * 180.02562 * 27 25 23 30 30 H 1.48509 * 109.47231 * 300.00275 * 27 25 23 31 31 C 1.53779 * 113.69228 * 272.53737 * 13 12 11 32 32 H 1.08996 * 109.47007 * 60.00305 * 1 2 3 33 33 H 1.08995 * 109.46957 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47318 * 300.00092 * 1 2 3 35 35 H 1.08995 * 109.47448 * 239.99638 * 2 1 3 36 36 H 1.08999 * 109.47511 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46865 * 300.00175 * 3 2 1 38 38 H 1.09004 * 109.47156 * 59.99809 * 3 2 1 39 39 H 1.08998 * 117.51239 * 145.03518 * 6 4 2 40 40 H 1.09002 * 117.50869 * 359.97438 * 6 4 2 41 41 H 0.97000 * 119.99498 * 359.97438 * 11 9 7 42 42 H 1.09000 * 109.46939 * 59.99750 * 12 11 9 43 43 H 1.08998 * 109.47372 * 300.00013 * 12 11 9 44 44 H 1.08997 * 113.61646 * 334.65773 * 15 13 12 45 45 H 1.08998 * 113.69354 * 203.76081 * 15 13 12 46 46 H 1.00893 * 111.00407 * 31.04733 * 18 16 15 47 47 H 1.09001 * 109.46582 * 299.99847 * 19 18 16 48 48 H 1.08998 * 109.47315 * 59.99513 * 19 18 16 49 49 H 0.96997 * 120.00444 * 359.97438 * 22 20 19 50 50 H 0.97001 * 120.00228 * 179.97438 * 26 25 23 51 51 H 1.09002 * 113.61557 * 156.32471 * 31 13 12 52 52 H 1.09004 * 113.61501 * 25.41892 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 2.1270 -0.1060 2.1449 6 6 3.0743 -1.8321 1.0512 7 6 1.6357 -2.1851 1.4344 8 1 1.0062 -2.6343 0.6663 9 6 1.3884 -2.6662 2.8409 10 8 1.5105 -1.9009 3.7739 11 7 1.0316 -3.9470 3.0622 12 6 0.7906 -4.4145 4.4295 13 6 0.4021 -5.8941 4.4015 14 1 1.0260 -6.4828 3.7289 15 6 0.2451 -6.5163 5.7990 16 6 -1.2273 -6.0759 5.7435 17 1 -1.3973 -5.0712 6.1303 18 7 -2.1592 -7.0672 6.2973 19 6 -3.3944 -6.4245 6.7656 20 6 -4.3234 -7.4703 7.3261 21 8 -3.9897 -8.6363 7.3344 22 7 -5.5252 -7.1098 7.8183 23 6 -6.3707 -8.0613 8.3279 24 1 -6.0735 -9.0996 8.3352 25 6 -7.6094 -7.6896 8.8358 26 7 -7.9709 -6.4263 8.8274 27 14 -8.7610 -8.9859 9.5307 28 1 -8.1003 -9.6772 10.6668 29 1 -10.0095 -8.3362 10.0046 30 1 -9.0891 -9.9750 8.4726 31 6 -1.1050 -6.1337 4.2117 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 3.8418 -1.9477 1.8165 40 1 3.3908 -2.0492 0.0310 41 1 0.9336 -4.5589 2.3160 42 1 -0.0184 -3.8351 4.8743 43 1 1.6967 -4.2875 5.0219 44 1 0.8239 -6.0086 6.5705 45 1 0.3770 -7.5982 5.8141 46 1 -1.7249 -7.5980 7.0373 47 1 -3.1543 -5.6985 7.5423 48 1 -3.8789 -5.9172 5.9313 49 1 -5.7920 -6.1773 7.8121 50 1 -8.8358 -6.1669 9.1816 51 1 -1.3422 -7.1110 3.7913 52 1 -1.6162 -5.3171 3.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488869015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:52 Heat of formation + Delta-G solvation = -47.477874 kcal Electronic energy + Delta-G solvation = -27972.255553 eV Core-core repulsion = 23972.264640 eV Total energy + Delta-G solvation = -3999.990913 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.52425 -39.53062 -38.12849 -37.76079 -35.01926 -34.02641 -33.73274 -33.15538 -31.18971 -28.40008 -27.57099 -26.48441 -25.77950 -24.52643 -23.76167 -23.26333 -22.34319 -20.63313 -20.12145 -19.36878 -18.84248 -17.86061 -17.44438 -16.78115 -16.18559 -15.71435 -15.53097 -15.23665 -15.11515 -14.86482 -14.66026 -14.30937 -14.20387 -13.92004 -13.55744 -13.47613 -13.35053 -12.98021 -12.87729 -12.78914 -12.57427 -12.40833 -12.20759 -11.75739 -11.65893 -11.57954 -11.56122 -11.51157 -11.10520 -11.02975 -10.98924 -10.69543 -10.56211 -10.48928 -10.43424 -10.34423 -10.19581 -10.04648 -9.48827 -9.33534 -8.42536 -8.05106 -7.94456 -6.40236 -3.81262 2.20653 2.79527 3.21055 3.26602 3.31046 3.40501 3.92663 4.11096 4.12693 4.30546 4.32994 4.34072 4.39169 4.54453 4.55721 4.61106 4.74212 4.76738 4.84367 4.89740 5.11397 5.14032 5.21760 5.26031 5.26912 5.27880 5.35155 5.43073 5.47348 5.48121 5.51326 5.57636 5.68418 5.72702 5.73734 5.77382 5.84146 5.87928 5.95678 5.96605 6.00322 6.08815 6.20157 6.24605 6.35046 7.20648 7.30613 7.56133 7.69266 7.95147 8.07581 8.62782 9.19042 9.55870 10.07399 10.77420 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.001562 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.432381 B =17924.642977 C =19081.318037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.067 4.067 3 C -0.145 4.145 4 C -0.111 4.111 5 H 0.118 0.882 6 C -0.149 4.149 7 C -0.190 4.190 8 H 0.123 0.877 9 C 0.541 3.459 10 O -0.541 6.541 11 N -0.723 5.723 12 C 0.137 3.863 13 C -0.127 4.127 14 H 0.085 0.915 15 C -0.131 4.131 16 C 0.057 3.943 17 H 0.071 0.929 18 N -0.656 5.656 19 C 0.049 3.951 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.301 4.301 24 H 0.102 0.898 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.274 1.274 29 H -0.284 1.284 30 H -0.274 1.274 31 C -0.121 4.121 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.402 0.598 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.350 0.650 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.093 0.907 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.933 12.582 -18.328 31.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.203 4.203 4 C -0.130 4.130 5 H 0.136 0.864 6 C -0.186 4.186 7 C -0.211 4.211 8 H 0.141 0.859 9 C 0.328 3.672 10 O -0.418 6.418 11 N -0.375 5.375 12 C 0.014 3.986 13 C -0.146 4.146 14 H 0.103 0.897 15 C -0.170 4.170 16 C -0.053 4.053 17 H 0.089 0.911 18 N -0.288 5.288 19 C -0.083 4.083 20 C 0.226 3.774 21 O -0.469 6.469 22 N -0.200 5.200 23 C -0.430 4.430 24 H 0.120 0.880 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.199 1.199 29 H -0.210 1.210 30 H -0.199 1.199 31 C -0.159 4.159 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.117 0.883 40 H 0.122 0.878 41 H 0.236 0.764 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.087 0.913 45 H 0.114 0.886 46 H 0.170 0.830 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.112 0.888 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 21.772 12.255 -18.143 30.877 hybrid contribution -0.714 0.026 0.844 1.106 sum 21.058 12.282 -17.298 29.892 Atomic orbital electron populations 1.21834 0.94665 1.01998 1.02002 1.20750 0.95979 0.96200 0.95600 1.21808 1.01111 0.95321 1.02015 1.22501 1.00856 0.89191 1.00428 0.86426 1.23103 0.90425 1.02169 1.02928 1.22272 1.01422 1.01625 0.95825 0.85878 1.19678 0.76083 0.81676 0.89785 1.90712 1.51561 1.54797 1.44769 1.45915 1.70506 1.11327 1.09712 1.21201 1.01305 0.93230 0.82914 1.22429 0.98412 0.94552 0.99239 0.89697 1.23194 0.96174 1.01763 0.95823 1.23092 0.91139 0.94928 0.96150 0.91124 1.60239 1.04790 1.23913 1.39901 1.21734 0.91899 0.95696 0.99006 1.19832 0.83717 0.89555 0.84280 1.90514 1.75977 1.19263 1.61104 1.41868 1.14132 1.10517 1.53529 1.19663 0.96131 0.91420 1.35801 0.87979 1.25260 0.97899 0.96991 0.97766 1.69606 1.22534 1.15595 1.46593 0.85915 0.78912 0.80044 0.79317 1.19924 1.20982 1.19894 1.23137 0.93463 1.02694 0.96609 0.92551 0.92624 0.92332 0.91039 0.92504 0.92497 0.92391 0.88304 0.87783 0.76372 0.91096 0.91304 0.91297 0.88649 0.82961 0.93902 0.89712 0.77459 0.91827 0.88801 0.91785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.03 37.16 0.34 -0.55 16 2 C -0.07 -0.38 3.07 -90.62 -0.28 -0.65 16 3 C -0.15 -0.76 9.18 37.16 0.34 -0.42 16 4 C -0.11 -0.78 4.67 -90.58 -0.42 -1.21 16 5 H 0.12 1.07 7.64 -51.93 -0.40 0.67 16 6 C -0.15 -0.88 9.88 -26.69 -0.26 -1.14 16 7 C -0.19 -1.33 5.39 -91.77 -0.49 -1.83 16 8 H 0.12 0.64 7.61 -51.93 -0.39 0.25 16 9 C 0.54 5.42 7.61 -10.98 -0.08 5.34 16 10 O -0.54 -7.66 16.26 5.55 0.09 -7.57 16 11 N -0.72 -5.84 5.56 -60.29 -0.33 -6.17 16 12 C 0.14 1.24 5.36 -4.04 -0.02 1.22 16 13 C -0.13 -1.06 3.94 -89.81 -0.35 -1.41 16 14 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 15 C -0.13 -1.27 7.24 -25.92 -0.19 -1.45 16 16 C 0.06 0.69 3.79 -66.90 -0.25 0.44 16 17 H 0.07 0.85 7.45 -51.93 -0.39 0.47 16 18 N -0.66 -10.54 6.18 -107.13 -0.66 -11.20 16 19 C 0.05 0.89 6.01 -4.98 -0.03 0.86 16 20 C 0.44 10.56 7.82 -10.99 -0.09 10.47 16 21 O -0.58 -16.02 15.78 5.55 0.09 -15.93 16 22 N -0.56 -14.51 5.29 -10.96 -0.06 -14.57 16 23 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 24 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 25 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 26 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 27 Si 0.93 21.22 29.55 -169.99 -5.02 16.19 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 30 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 31 C -0.12 -1.27 7.42 -25.92 -0.19 -1.46 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.33 7.29 -51.93 -0.38 -0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.07 0.34 7.90 -51.93 -0.41 -0.07 16 36 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.10 0.42 8.05 -51.93 -0.42 0.01 16 41 H 0.40 2.24 8.47 -40.82 -0.35 1.89 16 42 H 0.07 0.76 7.39 -51.93 -0.38 0.37 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 45 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 46 H 0.35 5.79 8.24 -39.30 -0.32 5.47 16 47 H 0.04 0.71 8.13 -51.93 -0.42 0.28 16 48 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 49 H 0.39 9.67 7.90 -40.82 -0.32 9.35 16 50 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 51 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 52 H 0.06 0.67 8.10 -51.93 -0.42 0.24 16 LS Contribution 425.87 15.07 6.42 6.42 Total: -1.00 -33.37 425.87 -10.18 -43.55 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -9.19 Total: 13.26 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -2.23 Total: 0.08 kcal Atomic # 7 Polarization: -55.67 SS G_CDS: -0.33 Total: -56.00 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: 0.18 Total: -23.50 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -33.37 -10.18 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488869015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.927 kcal (2) G-P(sol) polarization free energy of solvation -33.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds