Wall clock time and date at job start Tue Mar 31 2020 20:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47008 * 2 1 4 4 C 1.52996 * 109.47080 * 119.99480 * 2 1 3 5 5 H 1.09001 * 115.56509 * 274.31566 * 4 2 1 6 6 C 1.53077 * 117.49326 * 128.60260 * 4 2 1 7 7 C 1.52999 * 59.98301 * 252.51596 * 6 4 2 8 8 H 1.08999 * 117.49574 * 107.50240 * 7 6 4 9 9 C 1.50697 * 117.49743 * 252.49474 * 7 6 4 10 10 O 1.21290 * 120.00071 * 68.74976 * 9 7 6 11 11 N 1.34783 * 120.00410 * 248.74972 * 9 7 6 12 12 C 1.46499 * 120.00229 * 180.02562 * 11 9 7 13 13 C 1.53000 * 109.47051 * 179.97438 * 12 11 9 14 14 H 1.09007 * 112.84568 * 43.80632 * 13 12 11 15 15 C 1.53779 * 113.61424 * 174.99786 * 13 12 11 16 16 C 1.53787 * 87.07963 * 89.20141 * 15 13 12 17 17 H 1.08994 * 113.61447 * 270.88515 * 16 15 13 18 18 N 1.46897 * 113.61213 * 139.98051 * 16 15 13 19 19 C 1.46903 * 111.00106 * 155.00606 * 18 16 15 20 20 C 1.50694 * 109.47135 * 180.02562 * 19 18 16 21 21 O 1.21287 * 120.00398 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99670 * 179.97438 * 20 19 18 23 23 C 1.37106 * 120.00079 * 179.97438 * 22 20 19 24 24 H 1.08003 * 119.99778 * 0.02562 * 23 22 20 25 25 C 1.38948 * 120.00047 * 179.97438 * 23 22 20 26 26 N 1.31408 * 120.00300 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 119.99816 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47253 * 60.00309 * 27 25 23 29 29 H 1.48504 * 109.47410 * 180.02562 * 27 25 23 30 30 H 1.48509 * 109.47231 * 300.00275 * 27 25 23 31 31 C 1.53779 * 113.69228 * 272.53737 * 13 12 11 32 32 H 1.08996 * 109.47007 * 60.00305 * 1 2 3 33 33 H 1.08995 * 109.46957 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47318 * 300.00092 * 1 2 3 35 35 H 1.08995 * 109.47448 * 239.99638 * 2 1 3 36 36 H 1.08999 * 109.47511 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46865 * 300.00175 * 3 2 1 38 38 H 1.09004 * 109.47156 * 59.99809 * 3 2 1 39 39 H 1.08998 * 117.51239 * 145.03518 * 6 4 2 40 40 H 1.09002 * 117.50869 * 359.97438 * 6 4 2 41 41 H 0.97000 * 119.99498 * 359.97438 * 11 9 7 42 42 H 1.09000 * 109.46939 * 59.99750 * 12 11 9 43 43 H 1.08998 * 109.47372 * 300.00013 * 12 11 9 44 44 H 1.08997 * 113.61646 * 334.65773 * 15 13 12 45 45 H 1.08998 * 113.69354 * 203.76081 * 15 13 12 46 46 H 1.00893 * 111.00407 * 31.04733 * 18 16 15 47 47 H 1.09001 * 109.46582 * 299.99847 * 19 18 16 48 48 H 1.08998 * 109.47315 * 59.99513 * 19 18 16 49 49 H 0.96997 * 120.00444 * 359.97438 * 22 20 19 50 50 H 0.97001 * 120.00228 * 179.97438 * 26 25 23 51 51 H 1.09002 * 113.61557 * 156.32471 * 31 13 12 52 52 H 1.09004 * 113.61501 * 25.41892 * 31 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2493 5 1 2.1270 -0.1060 2.1449 6 6 3.0743 -1.8321 1.0512 7 6 1.6357 -2.1851 1.4344 8 1 1.0062 -2.6343 0.6663 9 6 1.3884 -2.6662 2.8409 10 8 1.5105 -1.9009 3.7739 11 7 1.0316 -3.9470 3.0622 12 6 0.7906 -4.4145 4.4295 13 6 0.4021 -5.8941 4.4015 14 1 1.0260 -6.4828 3.7289 15 6 0.2451 -6.5163 5.7990 16 6 -1.2273 -6.0759 5.7435 17 1 -1.3973 -5.0712 6.1303 18 7 -2.1592 -7.0672 6.2973 19 6 -3.3944 -6.4245 6.7656 20 6 -4.3234 -7.4703 7.3261 21 8 -3.9897 -8.6363 7.3344 22 7 -5.5252 -7.1098 7.8183 23 6 -6.3707 -8.0613 8.3279 24 1 -6.0735 -9.0996 8.3352 25 6 -7.6094 -7.6896 8.8358 26 7 -7.9709 -6.4263 8.8274 27 14 -8.7610 -8.9859 9.5307 28 1 -8.1003 -9.6772 10.6668 29 1 -10.0095 -8.3362 10.0046 30 1 -9.0891 -9.9750 8.4726 31 6 -1.1050 -6.1337 4.2117 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3634 0.5139 0.8900 35 1 1.8934 -0.5139 -0.8899 36 1 3.1300 1.4426 0.0005 37 1 1.6766 1.9563 -0.8900 38 1 1.6766 1.9564 0.8900 39 1 3.8418 -1.9477 1.8165 40 1 3.3908 -2.0492 0.0310 41 1 0.9336 -4.5589 2.3160 42 1 -0.0184 -3.8351 4.8743 43 1 1.6967 -4.2875 5.0219 44 1 0.8239 -6.0086 6.5705 45 1 0.3770 -7.5982 5.8141 46 1 -1.7249 -7.5980 7.0373 47 1 -3.1543 -5.6985 7.5423 48 1 -3.8789 -5.9172 5.9313 49 1 -5.7920 -6.1773 7.8121 50 1 -8.8358 -6.1669 9.1816 51 1 -1.3422 -7.1110 3.7913 52 1 -1.6162 -5.3171 3.7017 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001488869015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:51 Heat of formation + Delta-G solvation = -70.770006 kcal Electronic energy + Delta-G solvation = -27973.265576 eV Core-core repulsion = 23972.264640 eV Total energy + Delta-G solvation = -4001.000936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.27922 -40.50123 -39.85372 -38.44109 -36.22529 -35.75329 -34.48200 -34.15929 -33.25223 -29.42130 -28.07038 -27.87251 -26.64629 -25.99836 -24.71500 -23.76261 -23.28364 -21.32111 -21.15493 -20.65434 -19.98129 -19.69087 -18.15772 -17.95513 -17.28945 -16.93539 -16.61168 -16.34850 -16.25293 -15.92673 -15.77325 -15.52022 -15.39445 -15.02501 -14.79009 -14.37514 -14.12057 -13.98774 -13.77014 -13.55902 -13.51228 -13.40839 -13.18737 -13.09466 -13.01734 -12.81801 -12.54417 -12.44204 -12.17469 -12.13482 -12.04952 -11.92125 -11.56510 -11.51864 -11.43029 -11.21245 -11.19468 -11.03772 -10.78947 -10.33904 -10.10113 -10.03470 -9.32688 -8.47616 -5.97036 1.39405 1.41175 1.47714 1.52496 2.03257 2.12309 2.28606 2.85942 2.95766 3.19349 3.49035 3.54263 3.58864 3.75288 3.76538 3.79538 3.87293 3.91717 4.10939 4.21172 4.27255 4.31807 4.40068 4.43601 4.45403 4.51109 4.57668 4.67963 4.69909 4.77667 4.83841 4.87135 4.94340 4.96305 5.00602 5.04317 5.07819 5.13291 5.22414 5.25986 5.28461 5.36391 5.39868 5.43213 5.47938 5.54617 5.92008 6.15348 6.42212 6.55296 6.58361 7.10689 7.24286 7.54149 8.09117 8.69535 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017590 B = 0.001562 C = 0.001467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1591.432381 B =17924.642977 C =19081.318037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.061 4.061 3 C -0.146 4.146 4 C -0.121 4.121 5 H 0.089 0.911 6 C -0.133 4.133 7 C -0.191 4.191 8 H 0.148 0.852 9 C 0.535 3.465 10 O -0.591 6.591 11 N -0.711 5.711 12 C 0.140 3.860 13 C -0.103 4.103 14 H 0.108 0.892 15 C -0.125 4.125 16 C 0.046 3.954 17 H 0.072 0.928 18 N -0.667 5.667 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.622 6.622 22 N -0.573 5.573 23 C -0.337 4.337 24 H 0.080 0.920 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.995 3.005 28 H -0.271 1.271 29 H -0.270 1.270 30 H -0.271 1.271 31 C -0.118 4.118 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.040 0.960 35 H 0.090 0.910 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.045 0.955 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.417 0.583 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.077 0.923 45 H 0.096 0.904 46 H 0.345 0.655 47 H 0.062 0.938 48 H 0.098 0.902 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.086 0.914 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.679 12.454 -20.088 32.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.079 4.079 3 C -0.203 4.203 4 C -0.140 4.140 5 H 0.107 0.893 6 C -0.170 4.170 7 C -0.212 4.212 8 H 0.165 0.835 9 C 0.323 3.677 10 O -0.472 6.472 11 N -0.362 5.362 12 C 0.016 3.984 13 C -0.123 4.123 14 H 0.126 0.874 15 C -0.163 4.163 16 C -0.064 4.064 17 H 0.090 0.910 18 N -0.299 5.299 19 C -0.068 4.068 20 C 0.225 3.775 21 O -0.509 6.509 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.098 0.902 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.818 3.182 28 H -0.196 1.196 29 H -0.195 1.195 30 H -0.197 1.197 31 C -0.156 4.156 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.108 0.892 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.254 0.746 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.096 0.904 45 H 0.114 0.886 46 H 0.164 0.836 47 H 0.080 0.920 48 H 0.117 0.883 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.104 0.896 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 22.525 12.132 -19.939 32.436 hybrid contribution -0.908 0.092 1.396 1.668 sum 21.617 12.224 -18.543 30.993 Atomic orbital electron populations 1.21847 0.95112 1.02005 1.01616 1.20740 0.95532 0.96272 0.95394 1.21814 1.01376 0.95247 1.01866 1.22453 1.02221 0.89200 1.00132 0.89267 1.23188 0.89395 1.00369 1.04041 1.22315 1.02871 1.01563 0.94427 0.83469 1.20246 0.75204 0.81684 0.90566 1.90691 1.53844 1.56133 1.46512 1.45828 1.69401 1.11118 1.09893 1.21091 1.00507 0.93399 0.83393 1.22238 0.97207 0.94073 0.98733 0.87398 1.23169 0.94252 1.01966 0.96954 1.23318 0.91825 0.94169 0.97068 0.90971 1.60283 1.04904 1.25178 1.39558 1.21581 0.91636 0.93924 0.99693 1.20863 0.83590 0.90294 0.82750 1.90479 1.76710 1.21435 1.62262 1.41948 1.14728 1.10287 1.54073 1.19665 0.97700 0.91158 1.38127 0.90206 1.26070 0.98715 0.99154 0.97333 1.69671 1.23106 1.16871 1.46507 0.84964 0.77115 0.77566 0.78534 1.19615 1.19471 1.19653 1.23086 0.95032 1.02333 0.95136 0.91586 0.92413 0.94065 0.89223 0.92107 0.91555 0.93631 0.89240 0.85057 0.74591 0.92838 0.91680 0.90446 0.88579 0.83565 0.92000 0.88350 0.77055 0.91270 0.89555 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.03 71.98 0.65 -0.98 16 2 C -0.06 -0.59 3.07 -10.79 -0.03 -0.63 16 3 C -0.15 -1.39 9.18 71.98 0.66 -0.73 16 4 C -0.12 -1.62 4.67 -10.77 -0.05 -1.67 16 5 H 0.09 1.73 7.64 -2.39 -0.02 1.71 16 6 C -0.13 -1.30 9.88 30.62 0.30 -1.00 16 7 C -0.19 -2.36 5.39 -11.54 -0.06 -2.43 16 8 H 0.15 1.10 7.61 -2.39 -0.02 1.08 16 9 C 0.53 10.36 7.61 87.66 0.67 11.03 16 10 O -0.59 -17.16 16.26 -3.06 -0.05 -17.21 16 11 N -0.71 -10.32 5.56 -463.05 -2.57 -12.89 16 12 C 0.14 2.36 5.36 86.38 0.46 2.82 16 13 C -0.10 -1.49 3.94 -10.27 -0.04 -1.53 16 14 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 15 C -0.12 -2.20 7.24 31.12 0.23 -1.97 16 16 C 0.05 1.05 3.79 45.45 0.17 1.22 16 17 H 0.07 1.66 7.45 -2.39 -0.02 1.64 16 18 N -0.67 -21.04 6.18 -492.86 -3.05 -24.09 16 19 C 0.06 2.28 6.01 85.55 0.51 2.79 16 20 C 0.44 21.27 7.82 87.66 0.69 21.96 16 21 O -0.62 -34.93 15.78 -3.05 -0.05 -34.98 16 22 N -0.57 -30.07 5.29 -306.99 -1.62 -31.69 16 23 C -0.34 -19.43 9.68 84.04 0.81 -18.62 16 24 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 25 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 26 N -0.92 -50.36 13.05 21.66 0.28 -50.08 16 27 Si 0.99 43.27 29.55 68.60 2.03 45.30 16 28 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 29 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 30 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 31 C -0.12 -2.27 7.42 31.12 0.23 -2.04 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.60 7.29 -2.39 -0.02 0.58 16 34 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.58 7.90 -2.39 -0.02 0.56 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.13 0.59 8.05 -2.39 -0.02 0.57 16 41 H 0.42 3.52 8.47 -92.71 -0.79 2.74 16 42 H 0.05 1.11 7.39 -2.39 -0.02 1.10 16 43 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.08 1.25 8.10 -2.39 -0.02 1.23 16 45 H 0.10 1.73 8.14 -2.39 -0.02 1.72 16 46 H 0.34 11.36 8.24 -89.70 -0.74 10.62 16 47 H 0.06 1.97 8.13 -2.39 -0.02 1.95 16 48 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 49 H 0.40 19.79 7.90 -92.71 -0.73 19.06 16 50 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 51 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 52 H 0.06 1.25 8.10 -2.39 -0.02 1.23 16 Total: -1.00 -73.98 425.87 -0.69 -74.68 By element: Atomic # 1 Polarization: 44.29 SS G_CDS: -1.33 Total: 42.96 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.67 Total: 7.99 kcal Atomic # 7 Polarization: -111.79 SS G_CDS: -6.96 Total: -118.75 kcal Atomic # 8 Polarization: -52.09 SS G_CDS: -0.10 Total: -52.18 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.03 Total: 45.30 kcal Total: -73.98 -0.69 -74.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488869015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.906 kcal (2) G-P(sol) polarization free energy of solvation -73.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds