Wall clock time and date at job start Tue Mar 31 2020 20:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47091 * 2 1 4 4 C 1.53001 * 109.46704 * 120.00075 * 2 1 3 5 5 H 1.09000 * 115.54802 * 276.37303 * 4 2 1 6 6 C 1.52999 * 117.49658 * 130.67046 * 4 2 1 7 7 C 1.52999 * 60.00103 * 252.50604 * 6 4 2 8 8 H 1.09002 * 117.51788 * 252.51959 * 7 6 4 9 9 C 1.50698 * 117.49885 * 107.48858 * 7 6 4 10 10 O 1.21287 * 120.00088 * 329.24643 * 9 7 6 11 11 N 1.34777 * 120.00284 * 149.23883 * 9 7 6 12 12 C 1.46497 * 120.00112 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46998 * 180.02562 * 12 11 9 14 14 H 1.09000 * 112.85057 * 314.66753 * 13 12 11 15 15 C 1.53782 * 113.61461 * 85.86427 * 13 12 11 16 16 C 1.54051 * 86.98359 * 89.16235 * 15 13 12 17 17 H 1.09001 * 113.69108 * 270.87097 * 16 15 13 18 18 N 1.46902 * 113.61879 * 139.98244 * 16 15 13 19 19 C 1.46902 * 111.00283 * 107.49981 * 18 16 15 20 20 C 1.50699 * 109.47010 * 179.97438 * 19 18 16 21 21 O 1.21289 * 120.00265 * 0.02562 * 20 19 18 22 22 N 1.34778 * 119.99993 * 180.02562 * 20 19 18 23 23 C 1.37092 * 120.00206 * 179.97438 * 22 20 19 24 24 H 1.07995 * 120.00099 * 0.02562 * 23 22 20 25 25 C 1.38952 * 120.00059 * 180.02562 * 23 22 20 26 26 N 1.31416 * 120.00132 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 120.00154 * 0.02562 * 25 23 22 28 28 H 1.48496 * 109.47018 * 89.99758 * 27 25 23 29 29 H 1.48497 * 109.47625 * 210.00304 * 27 25 23 30 30 H 1.48504 * 109.46962 * 330.00405 * 27 25 23 31 31 C 1.53779 * 87.07948 * 25.43151 * 16 15 13 32 32 H 1.08998 * 109.47167 * 294.01312 * 1 2 3 33 33 H 1.09002 * 109.47207 * 54.01876 * 1 2 3 34 34 H 1.08998 * 109.47650 * 174.01545 * 1 2 3 35 35 H 1.09002 * 109.47005 * 239.99483 * 2 1 3 36 36 H 1.08999 * 109.46613 * 179.97438 * 3 2 1 37 37 H 1.09000 * 109.46790 * 299.99528 * 3 2 1 38 38 H 1.08999 * 109.47193 * 60.00146 * 3 2 1 39 39 H 1.09003 * 117.50104 * 145.01777 * 6 4 2 40 40 H 1.09002 * 117.50127 * 0.02562 * 6 4 2 41 41 H 0.97003 * 119.99448 * 0.02562 * 11 9 7 42 42 H 1.08999 * 109.47552 * 300.00234 * 12 11 9 43 43 H 1.08997 * 109.47390 * 60.00374 * 12 11 9 44 44 H 1.08999 * 113.61603 * 203.66333 * 15 13 12 45 45 H 1.09001 * 113.61757 * 334.57149 * 15 13 12 46 46 H 1.00903 * 111.00067 * 231.46031 * 18 16 15 47 47 H 1.08994 * 109.47402 * 299.99995 * 19 18 16 48 48 H 1.09007 * 109.46452 * 60.00383 * 19 18 16 49 49 H 0.97005 * 119.99822 * 359.97438 * 22 20 19 50 50 H 0.96996 * 119.99865 * 179.97438 * 26 25 23 51 51 H 1.08995 * 113.61078 * 220.02233 * 31 16 15 52 52 H 1.08998 * 113.68899 * 89.13208 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 1.2493 5 1 2.0936 -0.1147 2.1533 6 6 3.1092 -1.7984 1.0561 7 6 1.6756 -2.1986 1.4103 8 1 1.4897 -2.5638 2.4203 9 6 0.8419 -2.8318 0.3264 10 8 1.0272 -2.5322 -0.8342 11 7 -0.1095 -3.7311 0.6465 12 6 -0.9195 -4.3471 -0.4073 13 6 -1.9172 -5.3224 0.2207 14 1 -1.4637 -5.9638 0.9764 15 6 -3.2234 -4.6551 0.6825 16 6 -3.7673 -4.9269 -0.7330 17 1 -3.5632 -4.1247 -1.4421 18 7 -5.1707 -5.3608 -0.7510 19 6 -6.0446 -4.2956 -1.2606 20 6 -7.4727 -4.7766 -1.2649 21 8 -7.7367 -5.8964 -0.8808 22 7 -8.4567 -3.9625 -1.6957 23 6 -9.7559 -4.4002 -1.7001 24 1 -9.9909 -5.3973 -1.3580 25 6 -10.7702 -3.5611 -2.1447 26 7 -12.0157 -3.9805 -2.1484 27 14 -10.3636 -1.8368 -2.7370 28 1 -10.0880 -1.8667 -4.1958 29 1 -11.5142 -0.9370 -2.4689 30 1 -9.1653 -1.3358 -2.0170 31 6 -2.7624 -6.0883 -0.8107 32 1 -0.3633 0.4182 0.9387 33 1 -0.3634 0.6038 -0.8316 34 1 -0.3634 -1.0220 -0.1071 35 1 1.8933 -0.5139 -0.8900 36 1 3.1300 1.4424 0.0005 37 1 1.6767 1.9562 -0.8900 38 1 1.6767 1.9563 0.8900 39 1 3.8669 -1.9005 1.8331 40 1 3.4498 -1.9928 0.0391 41 1 -0.2578 -3.9705 1.5748 42 1 -1.4615 -3.5720 -0.9489 43 1 -0.2697 -4.8856 -1.0971 44 1 -3.7440 -5.2086 1.4640 45 1 -3.1145 -3.5955 0.9138 46 1 -5.2806 -6.2072 -1.2891 47 1 -5.9584 -3.4176 -0.6206 48 1 -5.7460 -4.0357 -2.2763 49 1 -8.2456 -3.0668 -2.0025 50 1 -12.7238 -3.3946 -2.4584 51 1 -2.2814 -6.1850 -1.7840 52 1 -3.1559 -7.0337 -0.4372 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001488869016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:55 Heat of formation + Delta-G solvation = -34.395269 kcal Electronic energy + Delta-G solvation = -28721.920034 eV Core-core repulsion = 24722.496426 eV Total energy + Delta-G solvation = -3999.423609 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.78000 -39.63920 -38.29645 -37.44386 -35.02983 -34.09189 -33.73371 -33.24071 -31.64148 -28.52145 -27.42228 -26.63344 -25.83846 -24.42622 -23.63163 -23.21803 -22.36958 -20.85313 -20.14665 -19.43178 -18.86599 -18.24601 -17.27811 -16.81958 -16.26525 -15.87773 -15.48634 -15.34458 -15.22983 -14.83619 -14.72178 -14.55799 -14.05550 -13.89080 -13.70791 -13.47155 -13.15118 -12.92369 -12.82643 -12.55691 -12.55342 -12.46283 -12.35994 -12.12671 -11.72178 -11.72097 -11.59177 -11.50047 -11.17270 -11.14011 -11.02510 -10.64003 -10.59357 -10.56666 -10.40704 -10.37784 -9.97480 -9.95200 -9.56821 -9.34651 -8.56419 -8.19546 -8.13313 -6.30718 -3.82055 2.13781 2.78728 3.03424 3.07297 3.15505 3.49352 3.75005 4.09980 4.12614 4.14851 4.27645 4.34726 4.42561 4.45088 4.51844 4.62718 4.66653 4.75373 4.93968 4.95395 5.04026 5.08079 5.20951 5.21999 5.25342 5.31257 5.39094 5.42824 5.48341 5.53815 5.60406 5.62148 5.63614 5.70648 5.71718 5.72858 5.79877 5.88895 5.90126 5.93265 5.99832 6.08487 6.16759 6.21128 6.24915 7.16692 7.19031 7.58393 7.60001 7.94020 8.15066 8.60371 8.95435 9.43051 9.83431 10.82399 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013859 B = 0.001953 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.865890 B =14336.749516 C =16002.025338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.071 4.071 3 C -0.144 4.144 4 C -0.109 4.109 5 H 0.112 0.888 6 C -0.144 4.144 7 C -0.196 4.196 8 H 0.118 0.882 9 C 0.545 3.455 10 O -0.537 6.537 11 N -0.726 5.726 12 C 0.138 3.862 13 C -0.127 4.127 14 H 0.085 0.915 15 C -0.121 4.121 16 C 0.057 3.943 17 H 0.071 0.929 18 N -0.656 5.656 19 C 0.047 3.953 20 C 0.450 3.550 21 O -0.565 6.565 22 N -0.591 5.591 23 C -0.305 4.305 24 H 0.119 0.881 25 C 0.041 3.959 26 N -0.881 5.881 27 Si 0.880 3.120 28 H -0.271 1.271 29 H -0.276 1.276 30 H -0.269 1.269 31 C -0.131 4.131 32 H 0.048 0.952 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.090 0.910 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.052 0.948 39 H 0.102 0.898 40 H 0.105 0.895 41 H 0.401 0.599 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.063 0.937 46 H 0.352 0.648 47 H 0.086 0.914 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.069 0.931 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.039 6.919 6.949 33.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 C -0.201 4.201 4 C -0.128 4.128 5 H 0.129 0.871 6 C -0.182 4.182 7 C -0.217 4.217 8 H 0.136 0.864 9 C 0.332 3.668 10 O -0.414 6.414 11 N -0.377 5.377 12 C 0.015 3.985 13 C -0.147 4.147 14 H 0.103 0.897 15 C -0.159 4.159 16 C -0.053 4.053 17 H 0.089 0.911 18 N -0.289 5.289 19 C -0.086 4.086 20 C 0.236 3.764 21 O -0.447 6.447 22 N -0.231 5.231 23 C -0.434 4.434 24 H 0.137 0.863 25 C -0.162 4.162 26 N -0.521 5.521 27 Si 0.706 3.294 28 H -0.197 1.197 29 H -0.202 1.202 30 H -0.195 1.195 31 C -0.169 4.169 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.235 0.765 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.172 0.828 47 H 0.104 0.896 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 31.605 6.552 6.956 33.018 hybrid contribution 0.090 1.242 -0.831 1.497 sum 31.694 7.794 6.125 33.208 Atomic orbital electron populations 1.21873 0.94983 1.02299 1.01145 1.20788 0.95919 0.95443 0.96769 1.21817 1.00843 0.95761 1.01715 1.22450 1.01259 0.88504 1.00555 0.87050 1.23102 0.89727 1.01671 1.03690 1.22300 0.99670 1.00424 0.99320 0.86387 1.19521 0.79690 0.78388 0.89176 1.90697 1.68735 1.61685 1.20321 1.45929 1.36926 1.43907 1.10927 1.21176 0.92168 0.95473 0.89710 1.22432 0.94903 0.97833 0.99493 0.89676 1.23179 0.94286 1.00515 0.97918 1.23148 0.87643 0.97210 0.97311 0.91126 1.60225 1.03266 1.06178 1.59200 1.21770 0.92830 0.95558 0.98438 1.19736 0.86009 0.86836 0.83861 1.90560 1.83373 1.20221 1.50560 1.42218 1.07596 1.14329 1.58907 1.19431 0.80068 1.02799 1.41055 0.86292 1.25044 0.95031 0.98405 0.97727 1.69623 0.99248 1.36902 1.46376 0.86670 0.78612 0.84463 0.79643 1.19657 1.20157 1.19473 1.23184 0.96325 0.98435 0.98972 0.93265 0.92774 0.92267 0.89200 0.92731 0.92570 0.92884 0.87970 0.87689 0.76460 0.91203 0.91298 0.88762 0.91781 0.82773 0.89591 0.93786 0.79696 0.91625 0.91259 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.70 37.16 0.32 -1.00 16 2 C -0.07 -0.58 2.28 -90.62 -0.21 -0.78 16 3 C -0.14 -0.96 9.18 37.16 0.34 -0.62 16 4 C -0.11 -0.72 5.12 -90.62 -0.46 -1.18 16 5 H 0.11 0.58 8.13 -51.93 -0.42 0.16 16 6 C -0.14 -0.88 9.71 -26.73 -0.26 -1.14 16 7 C -0.20 -1.29 6.10 -91.77 -0.56 -1.85 16 8 H 0.12 0.52 8.14 -51.93 -0.42 0.10 16 9 C 0.54 4.93 5.45 -10.99 -0.06 4.87 16 10 O -0.54 -6.61 13.12 5.55 0.07 -6.54 16 11 N -0.73 -5.35 5.56 -60.30 -0.33 -5.68 16 12 C 0.14 1.14 5.35 -4.04 -0.02 1.12 16 13 C -0.13 -0.98 3.93 -89.81 -0.35 -1.33 16 14 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 15 C -0.12 -1.18 7.44 -25.78 -0.19 -1.37 16 16 C 0.06 0.64 3.80 -66.76 -0.25 0.39 16 17 H 0.07 0.78 7.42 -51.93 -0.39 0.39 16 18 N -0.66 -9.94 6.19 -106.98 -0.66 -10.60 16 19 C 0.05 0.78 6.01 -4.98 -0.03 0.75 16 20 C 0.45 10.29 7.82 -10.98 -0.09 10.20 16 21 O -0.57 -15.25 15.78 5.55 0.09 -15.16 16 22 N -0.59 -14.22 5.09 -10.97 -0.06 -14.28 16 23 C -0.30 -8.69 10.16 -14.93 -0.15 -8.85 16 24 H 0.12 3.87 7.39 -52.49 -0.39 3.49 16 25 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 26 N -0.88 -25.89 13.96 55.50 0.77 -25.12 16 27 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 28 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 29 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 30 H -0.27 -5.47 6.52 56.52 0.37 -5.10 16 31 C -0.13 -1.18 7.24 -25.92 -0.19 -1.36 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.62 5.03 -51.93 -0.26 0.36 16 35 H 0.09 0.92 6.45 -51.93 -0.34 0.59 16 36 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.10 0.78 7.91 -51.93 -0.41 0.37 16 41 H 0.40 2.05 8.47 -40.82 -0.35 1.70 16 42 H 0.07 0.68 7.37 -51.93 -0.38 0.30 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 0.61 8.10 -51.93 -0.42 0.19 16 46 H 0.35 5.52 8.25 -39.29 -0.32 5.19 16 47 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 48 H 0.04 0.65 8.13 -51.92 -0.42 0.23 16 49 H 0.37 7.84 5.76 -40.82 -0.24 7.61 16 50 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.07 0.58 8.10 -51.93 -0.42 0.15 16 52 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 414.47 15.07 6.25 6.25 Total: -1.00 -33.92 414.47 -9.84 -43.75 By element: Atomic # 1 Polarization: 22.67 SS G_CDS: -8.99 Total: 13.68 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.26 Total: -1.12 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.28 Total: -55.68 kcal Atomic # 8 Polarization: -21.86 SS G_CDS: 0.16 Total: -21.70 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.92 -9.84 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001488869016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.359 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds