Wall clock time and date at job start Tue Mar 31 2020 19:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47543 * 2 1 4 4 H 1.08998 * 115.54890 * 29.32703 * 3 2 1 5 5 C 1.53073 * 117.50862 * 243.60515 * 3 2 1 6 6 C 1.52999 * 59.98397 * 252.52405 * 5 3 2 7 7 H 1.08997 * 117.50003 * 107.50356 * 6 5 3 8 8 C 1.50701 * 117.49498 * 252.50163 * 6 5 3 9 9 O 1.21281 * 119.99935 * 68.75128 * 8 6 5 10 10 N 1.34777 * 120.00149 * 248.74345 * 8 6 5 11 11 C 1.46500 * 120.00409 * 180.02562 * 10 8 6 12 12 H 1.09000 * 110.89983 * 322.59487 * 11 10 8 13 13 C 1.55147 * 110.98746 * 86.45470 * 11 10 8 14 14 C 1.54323 * 103.01706 * 153.74610 * 13 11 10 15 15 N 1.47443 * 107.23426 * 337.71801 * 14 13 11 16 16 C 1.46895 * 110.99888 * 236.74453 * 15 14 13 17 17 C 1.50700 * 109.46997 * 293.82290 * 16 15 14 18 18 O 1.21297 * 119.99660 * 354.10749 * 17 16 15 19 19 N 1.34774 * 120.00213 * 174.10995 * 17 16 15 20 20 C 1.37095 * 120.00000 * 180.02562 * 19 17 16 21 21 H 1.08001 * 120.00060 * 359.97438 * 20 19 17 22 22 C 1.38955 * 119.99729 * 179.97438 * 20 19 17 23 23 N 1.31402 * 120.00265 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 119.99890 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47280 * 59.99652 * 24 22 20 26 26 H 1.48498 * 109.47114 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47127 * 299.99952 * 24 22 20 28 28 C 1.47851 * 108.56815 * 359.00871 * 15 14 13 29 29 H 1.09001 * 110.37467 * 265.15756 * 28 15 14 30 30 C 1.52998 * 110.37421 * 142.92502 * 28 15 14 31 31 C 1.52992 * 109.46991 * 63.20636 * 30 28 15 32 32 H 1.08996 * 109.47642 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46963 * 300.00842 * 1 2 3 34 34 H 1.09001 * 109.46649 * 59.99707 * 1 2 3 35 35 H 1.09006 * 109.46963 * 239.99158 * 2 1 3 36 36 H 1.09002 * 109.46907 * 119.99808 * 2 1 3 37 37 H 1.09004 * 117.50834 * 145.04540 * 5 3 2 38 38 H 1.08998 * 117.49508 * 0.02562 * 5 3 2 39 39 H 0.97002 * 119.99861 * 0.02562 * 10 8 6 40 40 H 1.08998 * 110.70316 * 35.36545 * 13 11 10 41 41 H 1.08997 * 110.70415 * 272.13100 * 13 11 10 42 42 H 1.09002 * 109.88416 * 97.12314 * 14 13 11 43 43 H 1.08995 * 109.88950 * 218.14585 * 14 13 11 44 44 H 1.08994 * 109.47800 * 53.82719 * 16 15 14 45 45 H 1.09000 * 109.47088 * 173.82642 * 16 15 14 46 46 H 0.96998 * 119.99619 * 359.97438 * 19 17 16 47 47 H 0.97000 * 120.00466 * 179.97438 * 23 22 20 48 48 H 1.09001 * 109.46979 * 183.21238 * 30 28 15 49 49 H 1.09006 * 109.46813 * 303.20112 * 30 28 15 50 50 H 1.09001 * 109.47625 * 292.80774 * 31 30 28 51 51 H 1.08999 * 109.47401 * 52.81209 * 31 30 28 52 52 H 1.09003 * 109.46906 * 172.81455 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1715 0.4817 5 6 2.8449 1.9078 -1.2161 6 6 3.5503 1.6576 0.1183 7 1 4.1804 0.7717 0.1962 8 6 4.0230 2.8615 0.8918 9 8 3.2160 3.6152 1.3935 10 7 5.3426 3.1006 1.0261 11 6 5.8022 4.2706 1.7785 12 1 5.1480 5.1253 1.6062 13 6 5.9107 3.9501 3.2926 14 6 6.9828 4.9461 3.7828 15 7 7.7831 5.3394 2.6086 16 6 9.2081 5.0544 2.8235 17 6 9.7361 5.9363 3.9255 18 8 9.0289 6.7977 4.4043 19 7 10.9940 5.7680 4.3790 20 6 11.4742 6.5700 5.3819 21 1 10.8445 7.3369 5.8083 22 6 12.7709 6.3961 5.8498 23 7 13.5369 5.4627 5.3314 24 14 13.4254 7.4893 7.2159 25 1 12.5820 7.3264 8.4272 26 1 14.8242 7.1032 7.5316 27 1 13.3902 8.9069 6.7752 28 6 7.2706 4.6155 1.4257 29 1 7.8465 3.7052 1.2589 30 6 7.3242 5.5129 0.1876 31 6 8.7796 5.8694 -0.1211 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5140 0.8900 34 1 -0.3633 0.5139 -0.8900 35 1 1.8934 -0.5140 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.7227 2.9431 -1.5345 38 1 3.0103 1.1862 -2.0161 39 1 5.9880 2.4980 0.6246 40 1 6.2403 2.9226 3.4464 41 1 4.9596 4.1300 3.7937 42 1 6.5030 5.8240 4.2155 43 1 7.6207 4.4682 4.5262 44 1 9.3312 4.0086 3.1046 45 1 9.7605 5.2510 1.9046 46 1 11.5594 5.0790 3.9963 47 1 14.4422 5.3415 5.6578 48 1 6.8910 4.9856 -0.6623 49 1 6.7585 6.4255 0.3756 50 1 9.1740 6.5054 0.6714 51 1 9.3721 4.9566 -0.1831 52 1 8.8298 6.4004 -1.0718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489133164.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:32 Heat of formation + Delta-G solvation = -56.583219 kcal Electronic energy + Delta-G solvation = -29492.036983 eV Core-core repulsion = 25491.651232 eV Total energy + Delta-G solvation = -4000.385751 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.52339 -39.40153 -37.83751 -37.11723 -34.52770 -33.84773 -33.20080 -32.45605 -31.31910 -30.74951 -27.81203 -26.69591 -24.90318 -24.24099 -23.85794 -22.67333 -21.26921 -20.81682 -20.61181 -19.70825 -19.04278 -17.84832 -17.53576 -16.73226 -15.82834 -15.78276 -15.32736 -15.20982 -14.84359 -14.54910 -14.50473 -14.29627 -14.01094 -13.87148 -13.42068 -13.16470 -12.99370 -12.95540 -12.84680 -12.75947 -12.50495 -12.21961 -12.15832 -11.72917 -11.63789 -11.52804 -11.42444 -11.32473 -11.12526 -11.02520 -10.82511 -10.68074 -10.60430 -10.43441 -10.43002 -10.41316 -10.19975 -9.97820 -9.47288 -9.18493 -8.40969 -7.95793 -7.90844 -6.40223 -3.80831 2.27997 2.82578 3.21094 3.26486 3.31128 3.46220 3.93373 3.99495 4.20364 4.29043 4.37112 4.42199 4.44515 4.64711 4.76811 4.82086 4.93738 5.00659 5.03788 5.16649 5.22017 5.23626 5.26325 5.26946 5.35596 5.39487 5.44263 5.51370 5.59430 5.65740 5.66263 5.69647 5.75611 5.78748 5.83484 5.94719 5.99059 6.01108 6.05657 6.13014 6.24646 6.30180 6.39563 6.45740 6.52425 7.22319 7.25865 7.32816 7.56380 8.04583 8.07801 8.63853 9.20023 9.56329 10.08683 10.77546 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.025068 B = 0.001961 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1116.685401 B =14272.727379 C =14691.863905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.192 4.192 7 H 0.122 0.878 8 C 0.544 3.456 9 O -0.537 6.537 10 N -0.716 5.716 11 C 0.142 3.858 12 H 0.104 0.896 13 C -0.154 4.154 14 C 0.059 3.941 15 N -0.493 5.493 16 C 0.035 3.965 17 C 0.443 3.557 18 O -0.574 6.574 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.067 3.933 29 H 0.057 0.943 30 C -0.104 4.104 31 C -0.155 4.155 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.104 0.896 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.045 0.955 45 H 0.096 0.904 46 H 0.391 0.609 47 H 0.271 0.729 48 H 0.059 0.941 49 H 0.071 0.929 50 H 0.070 0.930 51 H 0.048 0.952 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.608 -13.044 -15.269 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.213 4.213 7 H 0.140 0.860 8 C 0.330 3.670 9 O -0.414 6.414 10 N -0.367 5.367 11 C 0.037 3.963 12 H 0.122 0.878 13 C -0.194 4.194 14 C -0.069 4.069 15 N -0.218 5.218 16 C -0.096 4.096 17 C 0.229 3.771 18 O -0.458 6.458 19 N -0.204 5.204 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.042 4.042 29 H 0.074 0.926 30 C -0.142 4.142 31 C -0.212 4.212 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.234 0.766 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.114 0.886 46 H 0.224 0.776 47 H 0.081 0.919 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.089 0.911 51 H 0.068 0.932 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.491 -11.408 -14.591 26.172 hybrid contribution 1.492 -1.177 0.481 1.960 sum -16.999 -12.585 -14.111 25.426 Atomic orbital electron populations 1.21742 0.95110 1.01678 1.02217 1.21160 0.96365 0.93586 1.02147 1.22501 0.91307 0.98778 1.01029 0.86371 1.23118 1.01983 1.03222 0.90245 1.22312 0.97889 0.98937 1.02198 0.85964 1.19645 0.82171 0.85515 0.79634 1.90711 1.53862 1.48500 1.48333 1.45856 1.06998 1.28347 1.55472 1.22137 0.95202 0.88382 0.90604 0.87822 1.23242 1.00657 0.99843 0.95648 1.22675 0.93955 0.97780 0.92516 1.63168 1.01639 1.54842 1.02129 1.22266 0.89627 0.97548 1.00199 1.19726 0.83367 0.87654 0.86393 1.90534 1.57773 1.36547 1.60921 1.41856 1.11435 1.33090 1.33972 1.19644 0.97073 1.13996 1.12050 0.88001 1.25240 0.96089 0.97510 0.99089 1.69597 1.09190 1.32623 1.43061 0.85930 0.77562 0.80009 0.80787 1.19966 1.21016 1.19904 1.22807 0.93076 0.95616 0.92717 0.92552 1.21440 0.97841 0.99835 0.95057 1.21860 0.96208 1.01413 1.01702 0.92597 0.92437 0.92502 0.91659 0.91395 0.88231 0.87796 0.76588 0.91526 0.90332 0.89625 0.92353 0.93692 0.88640 0.77597 0.91887 0.92250 0.90978 0.91079 0.93247 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.87 37.16 0.37 -0.46 16 2 C -0.10 -0.55 6.22 -26.73 -0.17 -0.72 16 3 C -0.12 -0.90 5.25 -90.58 -0.48 -1.37 16 4 H 0.12 1.13 7.60 -51.93 -0.39 0.74 16 5 C -0.15 -0.98 9.88 -26.69 -0.26 -1.24 16 6 C -0.19 -1.48 5.91 -91.77 -0.54 -2.03 16 7 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 8 C 0.54 5.99 7.61 -10.98 -0.08 5.91 16 9 O -0.54 -8.11 16.00 5.56 0.09 -8.02 16 10 N -0.72 -6.90 5.23 -51.74 -0.27 -7.17 16 11 C 0.14 1.72 2.73 -65.79 -0.18 1.54 16 12 H 0.10 1.46 7.64 -51.93 -0.40 1.06 16 13 C -0.15 -2.04 6.64 -24.90 -0.17 -2.20 16 14 C 0.06 0.96 5.60 -2.83 -0.02 0.94 16 15 N -0.49 -8.00 4.34 -224.81 -0.98 -8.98 16 16 C 0.04 0.61 4.61 -4.98 -0.02 0.59 16 17 C 0.44 10.39 7.23 -10.99 -0.08 10.31 16 18 O -0.57 -15.50 15.12 5.54 0.08 -15.42 16 19 N -0.57 -14.29 5.29 -10.96 -0.06 -14.35 16 20 C -0.30 -8.30 9.68 -14.93 -0.14 -8.45 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 24 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 25 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 28 C 0.07 0.82 2.23 -66.18 -0.15 0.68 16 29 H 0.06 0.63 7.67 -51.93 -0.40 0.23 16 30 C -0.10 -1.19 5.67 -26.74 -0.15 -1.34 16 31 C -0.15 -1.84 8.46 37.15 0.31 -1.52 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 36 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 39 H 0.40 2.80 8.52 -40.82 -0.35 2.45 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 43 H 0.06 1.03 7.25 -51.93 -0.38 0.66 16 44 H 0.05 0.72 8.07 -51.93 -0.42 0.31 16 45 H 0.10 1.53 5.24 -51.93 -0.27 1.26 16 46 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 47 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.07 1.04 6.63 -51.93 -0.34 0.69 16 51 H 0.05 0.53 7.88 -51.93 -0.41 0.13 16 52 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 416.46 15.07 6.28 6.28 Total: -1.00 -32.60 416.46 -10.10 -42.70 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: -9.09 Total: 11.51 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -1.85 Total: 1.13 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: -0.58 Total: -54.28 kcal Atomic # 8 Polarization: -23.62 SS G_CDS: 0.17 Total: -23.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.60 -10.10 -42.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489133164.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.888 kcal (2) G-P(sol) polarization free energy of solvation -32.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds