Wall clock time and date at job start Tue Mar 31 2020 20:08:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 109.47284 * 2 1 4 4 H 1.08991 * 109.99793 * 55.89388 * 3 2 1 5 5 C 1.54322 * 109.88269 * 294.79124 * 3 2 1 6 6 H 1.08994 * 110.71989 * 336.75593 * 5 3 2 7 7 N 1.46504 * 110.71827 * 100.02732 * 5 3 2 8 8 C 1.34768 * 119.99855 * 204.99783 * 7 5 3 9 9 O 1.21279 * 120.00264 * 0.02562 * 8 7 5 10 10 C 1.50701 * 119.99914 * 180.02562 * 8 7 5 11 11 C 1.53000 * 109.47213 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.46982 * 179.97438 * 11 10 8 13 13 C 1.53002 * 110.21524 * 301.92526 * 12 11 10 14 14 C 1.54474 * 110.24190 * 180.02562 * 12 11 10 15 15 C 1.54638 * 101.76253 * 215.58329 * 14 12 11 16 16 C 1.51279 * 104.19355 * 24.79659 * 15 14 12 17 17 O 1.21283 * 124.94122 * 163.74587 * 16 15 14 18 18 N 1.34419 * 110.11531 * 343.74948 * 16 15 14 19 19 C 1.55155 * 102.94173 * 218.39039 * 5 3 2 20 20 C 1.54907 * 101.58270 * 35.50454 * 19 5 3 21 21 N 1.47031 * 109.88093 * 176.98242 * 3 2 1 22 22 C 1.36932 * 125.64779 * 298.32993 * 21 3 2 23 23 H 1.07997 * 119.99867 * 345.35267 * 22 21 3 24 24 C 1.38812 * 119.99767 * 165.36686 * 22 21 3 25 25 N 1.31619 * 120.00083 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 120.00065 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46882 * 359.97438 * 26 24 22 28 28 H 1.48504 * 109.47413 * 119.99204 * 26 24 22 29 29 H 1.48497 * 109.47456 * 239.99701 * 26 24 22 30 30 H 1.09007 * 109.47213 * 305.57987 * 1 2 3 31 31 H 1.09008 * 109.46886 * 65.57296 * 1 2 3 32 32 H 1.09000 * 109.47642 * 185.57606 * 1 2 3 33 33 H 1.09006 * 109.47171 * 240.00136 * 2 1 3 34 34 H 1.08999 * 109.47246 * 120.00531 * 2 1 3 35 35 H 0.96997 * 119.99371 * 25.00223 * 7 5 3 36 36 H 1.09007 * 109.47055 * 300.00449 * 10 8 7 37 37 H 1.08998 * 109.47471 * 59.99659 * 10 8 7 38 38 H 1.08994 * 109.47207 * 299.99525 * 11 10 8 39 39 H 1.09001 * 109.46878 * 60.00046 * 11 10 8 40 40 H 1.09005 * 109.46462 * 59.30689 * 13 12 11 41 41 H 1.09002 * 109.46920 * 179.29407 * 13 12 11 42 42 H 1.08992 * 109.47644 * 299.30389 * 13 12 11 43 43 H 1.09000 * 110.97064 * 333.70019 * 14 12 11 44 44 H 1.08998 * 110.97023 * 97.46630 * 14 12 11 45 45 H 1.08998 * 110.48565 * 143.47919 * 15 14 12 46 46 H 1.09004 * 110.48356 * 266.12050 * 15 14 12 47 47 H 0.96998 * 124.34297 * 179.57019 * 18 16 15 48 48 H 1.09002 * 111.00556 * 153.57872 * 19 5 3 49 49 H 1.09004 * 111.00663 * 277.43114 * 19 5 3 50 50 H 1.09007 * 110.36991 * 204.15340 * 20 19 5 51 51 H 1.08993 * 110.36843 * 81.82772 * 20 19 5 52 52 H 0.97005 * 120.00323 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6228 1.9854 0.8480 5 6 1.6412 2.1402 -1.3175 6 1 1.4664 1.4068 -2.1046 7 7 0.4593 2.9831 -1.1205 8 6 -0.3449 3.2703 -2.1632 9 8 -0.0903 2.8307 -3.2644 10 6 -1.5604 4.1378 -1.9606 11 6 -2.2942 4.3065 -3.2925 12 6 -3.5287 5.1867 -3.0867 13 6 -4.4520 4.5654 -2.0368 14 6 -4.2842 5.3684 -4.4218 15 6 -4.7933 6.8235 -4.3005 16 6 -3.8249 7.4764 -3.3390 17 8 -3.6970 8.6729 -3.1874 18 7 -3.1267 6.5375 -2.6773 19 6 2.8861 3.0075 -1.6420 20 6 4.0370 2.0988 -1.1429 21 7 3.5085 1.4536 0.0728 22 6 4.2604 0.9489 1.0999 23 1 3.7942 0.7123 2.0448 24 6 5.6220 0.7416 0.9264 25 7 6.1901 1.0297 -0.2254 26 14 6.6480 0.0537 2.3277 27 1 5.7782 -0.1842 3.5076 28 1 7.2693 -1.2268 1.9041 29 1 7.7120 1.0257 2.6856 30 1 -0.3634 0.5980 0.8359 31 1 -0.3633 0.4250 -0.9358 32 1 -0.3634 -1.0228 0.0999 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.2556 3.3344 -0.2396 36 1 -2.2258 3.6676 -1.2365 37 1 -1.2517 5.1149 -1.5892 38 1 -1.6291 4.7765 -4.0168 39 1 -2.6030 3.3292 -3.6635 40 1 -3.9135 4.4628 -1.0947 41 1 -5.3204 5.2079 -1.8908 42 1 -4.7798 3.5831 -2.3769 43 1 -3.6083 5.2611 -5.2702 44 1 -5.1166 4.6688 -4.4973 45 1 -4.7621 7.3207 -5.2700 46 1 -5.8046 6.8411 -3.8941 47 1 -2.4447 6.7283 -2.0146 48 1 2.9678 3.1883 -2.7138 49 1 2.8625 3.9470 -1.0896 50 1 4.9161 2.6970 -0.9031 51 1 4.2813 1.3485 -1.8948 52 1 7.1415 0.8845 -0.3467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489149501.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:05 Heat of formation + Delta-G solvation = -66.824991 kcal Electronic energy + Delta-G solvation = -30099.952502 eV Core-core repulsion = 26099.122635 eV Total energy + Delta-G solvation = -4000.829867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.06729 -39.76921 -37.95315 -37.37037 -34.04746 -33.38677 -32.78005 -31.76490 -31.71613 -29.81611 -28.90202 -26.91648 -26.12299 -24.55625 -23.54210 -22.14784 -21.18294 -20.74354 -20.26232 -20.15199 -19.35556 -17.53471 -16.88519 -16.65985 -16.49602 -15.93174 -15.69690 -15.14756 -14.81095 -14.49682 -14.21354 -14.04855 -13.97022 -13.84313 -13.66427 -13.30678 -13.07810 -12.99469 -12.77448 -12.70622 -12.57578 -12.02759 -11.97707 -11.96090 -11.68802 -11.42802 -11.25221 -11.18762 -11.03924 -10.93273 -10.86342 -10.65719 -10.49002 -10.31464 -10.17115 -10.07972 -9.79644 -9.69290 -9.62445 -9.48257 -8.67983 -8.59418 -6.84199 -5.78823 -3.15377 2.29790 2.73466 2.99116 3.27592 3.36170 3.42140 3.44141 3.86865 4.02751 4.26174 4.44362 4.51263 4.52758 4.75400 4.82996 4.89583 5.07814 5.09119 5.21128 5.27229 5.32324 5.34557 5.37431 5.44038 5.48907 5.51375 5.51685 5.64212 5.71139 5.76196 5.77168 5.82607 5.92755 6.01515 6.19214 6.27180 6.37201 6.42376 6.49118 6.53220 6.64066 6.70211 6.70999 6.91479 7.11210 7.47603 7.57469 7.69584 7.75771 7.94229 8.22702 8.37538 9.14596 9.75678 10.43403 11.33170 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023480 B = 0.002168 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.212062 B =12911.564334 C =13343.408996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.132 4.132 3 C 0.160 3.840 4 H 0.034 0.966 5 C 0.137 3.863 6 H 0.094 0.906 7 N -0.714 5.714 8 C 0.510 3.490 9 O -0.544 6.544 10 C -0.145 4.145 11 C -0.104 4.104 12 C 0.154 3.846 13 C -0.161 4.161 14 C -0.124 4.124 15 C -0.157 4.157 16 C 0.519 3.481 17 O -0.539 6.539 18 N -0.721 5.721 19 C -0.156 4.156 20 C 0.174 3.826 21 N -0.594 5.594 22 C -0.228 4.228 23 H 0.075 0.925 24 C -0.004 4.004 25 N -0.916 5.916 26 Si 0.910 3.090 27 H -0.279 1.279 28 H -0.290 1.290 29 H -0.290 1.290 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.080 0.920 39 H 0.088 0.912 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.103 0.897 47 H 0.408 0.592 48 H 0.061 0.939 49 H 0.060 0.940 50 H 0.073 0.927 51 H 0.028 0.972 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.189 6.182 -5.243 24.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.171 4.171 3 C 0.052 3.948 4 H 0.052 0.948 5 C 0.033 3.967 6 H 0.112 0.888 7 N -0.364 5.364 8 C 0.296 3.704 9 O -0.421 6.421 10 C -0.186 4.186 11 C -0.142 4.142 12 C 0.068 3.932 13 C -0.219 4.219 14 C -0.162 4.162 15 C -0.197 4.197 16 C 0.306 3.694 17 O -0.416 6.416 18 N -0.377 5.377 19 C -0.196 4.196 20 C 0.049 3.951 21 N -0.319 5.319 22 C -0.356 4.356 23 H 0.093 0.907 24 C -0.201 4.201 25 N -0.562 5.562 26 Si 0.740 3.260 27 H -0.204 1.204 28 H -0.217 1.217 29 H -0.217 1.217 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.231 0.769 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.120 0.880 46 H 0.121 0.879 47 H 0.248 0.752 48 H 0.080 0.920 49 H 0.079 0.921 50 H 0.092 0.908 51 H 0.046 0.954 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -22.773 6.418 -6.001 24.410 hybrid contribution 0.906 -0.274 1.538 1.805 sum -21.868 6.145 -4.464 23.149 Atomic orbital electron populations 1.21761 0.97305 1.00453 1.00812 1.22010 0.93542 0.99198 1.02393 1.21086 0.87073 0.93345 0.93261 0.94828 1.22098 0.83501 0.92453 0.98686 0.88814 1.46099 1.26918 1.52031 1.11388 1.20502 0.84073 0.81128 0.84666 1.90705 1.73714 1.53258 1.24436 1.21766 0.96079 1.00544 1.00163 1.21663 0.94986 1.00720 0.96872 1.21122 0.94934 0.82406 0.94757 1.22266 0.99322 1.01311 0.98989 1.22713 1.00743 0.96086 0.96612 1.22363 0.99880 0.96556 1.00886 1.20895 0.81360 0.85884 0.81303 1.90769 1.68605 1.14543 1.67652 1.46452 1.40997 1.06905 1.43351 1.23419 0.96890 0.99049 1.00259 1.21427 0.93130 0.92889 0.87677 1.44455 0.98387 1.68386 1.20650 1.18975 0.89929 1.35913 0.90810 0.90674 1.24919 0.97266 1.00915 0.96978 1.69938 1.10624 1.52846 1.22811 0.86085 0.80256 0.78504 0.81141 1.20445 1.21672 1.21742 0.93512 0.93356 0.93722 0.92392 0.91751 0.76900 0.88509 0.89431 0.90163 0.89325 0.91523 0.92071 0.90757 0.89441 0.88890 0.88038 0.87878 0.75231 0.92008 0.92126 0.90844 0.95426 0.93646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.58 37.16 0.36 -1.67 16 2 C -0.13 -2.36 5.41 -26.73 -0.14 -2.51 16 3 C 0.16 3.06 2.94 -66.95 -0.20 2.86 16 4 H 0.03 0.62 7.72 -51.93 -0.40 0.22 16 5 C 0.14 2.34 2.01 -66.10 -0.13 2.21 16 6 H 0.09 1.77 7.19 -51.93 -0.37 1.40 16 7 N -0.71 -9.20 4.92 -52.03 -0.26 -9.45 16 8 C 0.51 6.36 7.83 -10.99 -0.09 6.27 16 9 O -0.54 -8.98 15.63 5.56 0.09 -8.90 16 10 C -0.15 -1.10 5.19 -27.88 -0.14 -1.25 16 11 C -0.10 -0.75 3.71 -26.73 -0.10 -0.85 16 12 C 0.15 0.86 0.88 -130.90 -0.11 0.74 16 13 C -0.16 -0.70 8.41 37.16 0.31 -0.39 16 14 C -0.12 -0.57 6.21 -25.10 -0.16 -0.72 16 15 C -0.16 -0.91 6.86 -26.74 -0.18 -1.09 16 16 C 0.52 4.95 8.43 -10.86 -0.09 4.86 16 17 O -0.54 -7.65 18.03 5.56 0.10 -7.55 16 18 N -0.72 -5.26 5.40 -46.62 -0.25 -5.51 16 19 C -0.16 -2.97 6.77 -24.58 -0.17 -3.14 16 20 C 0.17 4.13 5.41 -2.53 -0.01 4.11 16 21 N -0.59 -14.35 3.13 -162.57 -0.51 -14.85 16 22 C -0.23 -6.06 9.75 -15.06 -0.15 -6.21 16 23 H 0.08 1.95 7.83 -52.49 -0.41 1.53 16 24 C 0.00 -0.10 5.47 -17.43 -0.10 -0.20 16 25 N -0.92 -26.32 10.58 55.49 0.59 -25.74 16 26 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.67 7.41 -51.92 -0.38 0.28 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 34 H 0.06 1.25 7.90 -51.93 -0.41 0.84 16 35 H 0.40 4.17 8.37 -40.82 -0.34 3.83 16 36 H 0.10 0.54 6.44 -51.93 -0.33 0.21 16 37 H 0.09 0.56 6.95 -51.93 -0.36 0.19 16 38 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 39 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 40 H 0.07 0.29 6.43 -51.93 -0.33 -0.05 16 41 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.09 0.42 7.91 -51.93 -0.41 0.01 16 44 H 0.09 0.26 7.89 -51.93 -0.41 -0.14 16 45 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.41 2.82 7.76 -40.82 -0.32 2.50 16 48 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 49 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.07 1.94 6.93 -51.93 -0.36 1.58 16 51 H 0.03 0.72 8.06 -51.93 -0.42 0.30 16 52 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 405.89 15.07 6.12 6.12 Total: -1.00 -33.83 405.89 -9.30 -43.13 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -9.04 Total: 3.17 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -1.10 Total: 3.04 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.43 Total: -55.55 kcal Atomic # 8 Polarization: -16.64 SS G_CDS: 0.19 Total: -16.45 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.83 -9.30 -43.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489149501.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.697 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds