Wall clock time and date at job start Tue Mar 31 2020 20:08:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52996 * 109.47370 * 2 1 4 4 H 1.09004 * 109.87369 * 55.50412 * 3 2 1 5 5 C 1.54327 * 109.87982 * 294.48947 * 3 2 1 6 6 H 1.08997 * 110.71859 * 336.93042 * 5 3 2 7 7 N 1.46501 * 110.71911 * 100.02513 * 5 3 2 8 8 C 1.34777 * 119.99727 * 204.99518 * 7 5 3 9 9 O 1.21280 * 120.00219 * 0.02562 * 8 7 5 10 10 C 1.50704 * 119.99790 * 179.97438 * 8 7 5 11 11 C 1.53007 * 109.46852 * 180.02562 * 10 8 7 12 12 C 1.52994 * 109.46739 * 180.02562 * 11 10 8 13 13 C 1.53002 * 110.21869 * 63.07434 * 12 11 10 14 14 C 1.54482 * 110.24504 * 185.00387 * 12 11 10 15 15 C 1.54628 * 101.76669 * 93.58633 * 14 12 11 16 16 C 1.51288 * 104.19351 * 24.79629 * 15 14 12 17 17 O 1.21279 * 124.93599 * 163.70879 * 16 15 14 18 18 N 1.34413 * 110.11606 * 343.75270 * 16 15 14 19 19 C 1.55155 * 102.93957 * 218.38511 * 5 3 2 20 20 C 1.54910 * 101.58431 * 35.50557 * 19 5 3 21 21 N 1.47018 * 109.88485 * 176.67797 * 3 2 1 22 22 C 1.36928 * 125.65138 * 298.33715 * 21 3 2 23 23 H 1.08000 * 120.00188 * 345.73601 * 22 21 3 24 24 C 1.38814 * 120.00296 * 165.73474 * 22 21 3 25 25 N 1.31614 * 119.99958 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00020 * 179.97438 * 24 22 21 27 27 H 1.48503 * 109.46919 * 60.00805 * 26 24 22 28 28 H 1.48501 * 109.46901 * 180.02562 * 26 24 22 29 29 H 1.48493 * 109.47607 * 300.00381 * 26 24 22 30 30 H 1.09007 * 109.47380 * 305.62498 * 1 2 3 31 31 H 1.09009 * 109.47546 * 185.62689 * 1 2 3 32 32 H 1.08996 * 109.47482 * 65.62666 * 1 2 3 33 33 H 1.09007 * 109.47226 * 120.00107 * 2 1 3 34 34 H 1.08997 * 109.47307 * 239.99314 * 2 1 3 35 35 H 0.96998 * 120.00371 * 25.00128 * 7 5 3 36 36 H 1.08991 * 109.47653 * 300.00509 * 10 8 7 37 37 H 1.09004 * 109.46527 * 60.00764 * 10 8 7 38 38 H 1.08991 * 109.47353 * 300.00626 * 11 10 8 39 39 H 1.09002 * 109.46672 * 60.00536 * 11 10 8 40 40 H 1.09007 * 109.46745 * 60.69732 * 13 12 11 41 41 H 1.08998 * 109.47415 * 180.69280 * 13 12 11 42 42 H 1.08995 * 109.46870 * 300.70031 * 13 12 11 43 43 H 1.09000 * 110.96932 * 211.70805 * 14 12 11 44 44 H 1.09000 * 110.96768 * 335.46804 * 14 12 11 45 45 H 1.08995 * 110.48975 * 143.47860 * 15 14 12 46 46 H 1.08998 * 110.48426 * 265.98948 * 15 14 12 47 47 H 0.97003 * 124.34984 * 179.61184 * 18 16 15 48 48 H 1.09001 * 111.00237 * 153.57306 * 19 5 3 49 49 H 1.08999 * 111.00947 * 277.39048 * 19 5 3 50 50 H 1.08992 * 110.37278 * 81.82429 * 20 19 5 51 51 H 1.08996 * 110.36904 * 204.04373 * 20 19 5 52 52 H 0.97001 * 120.00316 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6161 1.9853 0.8449 5 6 1.6477 2.1378 -1.3207 6 1 1.4738 1.4028 -2.1066 7 7 0.4648 2.9809 -1.1312 8 6 -0.3341 3.2663 -2.1784 9 8 -0.0740 2.8247 -3.2776 10 6 -1.5514 4.1332 -1.9833 11 6 -2.2783 4.2997 -3.3193 12 6 -3.5137 5.1802 -3.1213 13 6 -3.0971 6.5826 -2.6730 14 6 -4.3301 5.2580 -4.4304 15 6 -5.3557 4.1182 -4.2306 16 6 -5.4554 3.9679 -2.7285 17 8 -6.3450 3.3843 -2.1464 18 7 -4.4151 4.5761 -2.1331 19 6 2.8942 3.0046 -1.6405 20 6 4.0427 2.0968 -1.1341 21 7 3.5079 1.4538 0.0801 22 6 4.2548 0.9508 1.1117 23 1 3.7829 0.7099 2.0528 24 6 5.6186 0.7505 0.9480 25 7 6.1939 1.0444 -0.1987 26 14 6.6376 0.0650 2.3555 27 1 6.1211 -1.2750 2.7337 28 1 8.0551 -0.0527 1.9289 29 1 6.5468 0.9781 3.5230 30 1 -0.3634 0.5986 0.8354 31 1 -0.3634 -1.0228 0.1008 32 1 -0.3634 0.4241 -0.9360 33 1 1.8933 -0.5139 0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 0.2566 3.3339 -0.2520 36 1 -2.2202 3.6635 -1.2622 37 1 -1.2451 5.1111 -1.6116 38 1 -1.6097 4.7691 -4.0407 39 1 -2.5846 3.3216 -3.6906 40 1 -2.4672 7.0364 -3.4382 41 1 -3.9861 7.1954 -2.5239 42 1 -2.5413 6.5149 -1.7379 43 1 -4.8309 6.2219 -4.5212 44 1 -3.6972 5.0658 -5.2968 45 1 -6.3220 4.3964 -4.6512 46 1 -4.9943 3.1958 -4.6851 47 1 -4.2775 4.6110 -1.1735 48 1 2.9812 3.1834 -2.7122 49 1 2.8675 3.9453 -1.0905 50 1 4.2908 1.3453 -1.8834 51 1 4.9211 2.6953 -0.8928 52 1 7.1470 0.9048 -0.3131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489149508.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:07 Heat of formation + Delta-G solvation = -90.425802 kcal Electronic energy + Delta-G solvation = -30246.713693 eV Core-core repulsion = 26244.860418 eV Total energy + Delta-G solvation = -4001.853275 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.69909 -40.92328 -39.32464 -38.21538 -35.58601 -34.30887 -33.91208 -33.40909 -32.23790 -31.08294 -30.37089 -28.17173 -26.71679 -25.97915 -24.61565 -23.51699 -22.19259 -21.76379 -21.52810 -21.16932 -20.55040 -18.77334 -18.22602 -17.71219 -17.30934 -16.83635 -16.69132 -16.59662 -15.80876 -15.75406 -15.49990 -15.36721 -15.00927 -14.74474 -14.56805 -14.40462 -14.28121 -13.83818 -13.70489 -13.55155 -13.40519 -13.25372 -13.12395 -12.97235 -12.87734 -12.69165 -12.59536 -12.40000 -12.23024 -12.12391 -12.07031 -12.00705 -11.90326 -11.76168 -11.57498 -11.43635 -11.36376 -10.90972 -10.79366 -10.66023 -10.09824 -9.91930 -8.83599 -7.85815 -5.23752 1.46528 1.49150 1.55253 1.60414 1.74593 2.21267 2.44335 2.51899 3.33576 3.38371 3.55356 3.59266 3.74385 3.85264 3.92294 3.99556 4.03635 4.16118 4.20692 4.32526 4.37876 4.40603 4.43197 4.55834 4.59519 4.63824 4.68705 4.75601 4.80247 4.88519 4.95543 5.01488 5.02877 5.07379 5.14481 5.16780 5.18316 5.21085 5.27583 5.31743 5.43881 5.45219 5.49497 5.58387 5.69444 5.72134 5.94648 6.09535 6.23257 6.66905 7.08915 7.29666 7.36908 7.76712 8.43707 9.25134 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023871 B = 0.002261 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1172.665724 B =12383.416808 C =12927.887824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.126 4.126 3 C 0.158 3.842 4 H 0.053 0.947 5 C 0.156 3.844 6 H 0.073 0.927 7 N -0.705 5.705 8 C 0.509 3.491 9 O -0.586 6.586 10 C -0.133 4.133 11 C -0.104 4.104 12 C 0.159 3.841 13 C -0.156 4.156 14 C -0.117 4.117 15 C -0.157 4.157 16 C 0.510 3.490 17 O -0.594 6.594 18 N -0.711 5.711 19 C -0.139 4.139 20 C 0.181 3.819 21 N -0.613 5.613 22 C -0.233 4.233 23 H 0.081 0.919 24 C -0.063 4.063 25 N -0.950 5.950 26 Si 0.974 3.026 27 H -0.279 1.279 28 H -0.297 1.297 29 H -0.274 1.274 30 H 0.067 0.933 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.032 0.968 35 H 0.413 0.587 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.086 0.914 39 H 0.056 0.944 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.102 0.898 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.107 0.893 47 H 0.412 0.588 48 H 0.065 0.935 49 H 0.076 0.924 50 H -0.010 1.010 51 H 0.041 0.959 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.567 13.836 -6.117 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.166 4.166 3 C 0.051 3.949 4 H 0.070 0.930 5 C 0.050 3.950 6 H 0.091 0.909 7 N -0.357 5.357 8 C 0.298 3.702 9 O -0.466 6.466 10 C -0.173 4.173 11 C -0.143 4.143 12 C 0.073 3.927 13 C -0.213 4.213 14 C -0.155 4.155 15 C -0.197 4.197 16 C 0.298 3.702 17 O -0.476 6.476 18 N -0.365 5.365 19 C -0.179 4.179 20 C 0.055 3.945 21 N -0.338 5.338 22 C -0.362 4.362 23 H 0.099 0.901 24 C -0.256 4.256 25 N -0.598 5.598 26 Si 0.803 3.197 27 H -0.205 1.205 28 H -0.224 1.224 29 H -0.200 1.200 30 H 0.086 0.914 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.051 0.949 35 H 0.250 0.750 36 H 0.123 0.877 37 H 0.143 0.857 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.252 0.748 48 H 0.084 0.916 49 H 0.095 0.905 50 H 0.008 0.992 51 H 0.060 0.940 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -21.631 13.189 -6.665 26.197 hybrid contribution 1.305 -0.885 1.378 2.094 sum -20.326 12.305 -5.287 24.342 Atomic orbital electron populations 1.21632 0.93907 1.01793 1.01658 1.21904 0.96383 0.97977 1.00355 1.21267 0.84380 0.94355 0.94865 0.92963 1.21577 0.84555 0.92079 0.96801 0.90919 1.45913 1.25698 1.51450 1.12595 1.21383 0.84702 0.80606 0.83530 1.90695 1.74699 1.54743 1.26435 1.21758 0.93526 1.01147 1.00860 1.21713 0.95731 1.00279 0.96567 1.21180 0.88870 0.93768 0.88831 1.22164 1.02729 0.93189 1.03260 1.22768 0.96698 0.99123 0.96890 1.22408 1.03248 1.02216 0.91786 1.21454 0.80387 0.76266 0.92099 1.90731 1.38483 1.45667 1.72695 1.46478 1.24481 1.55489 1.10086 1.23210 0.95508 0.98708 1.00437 1.21141 0.94012 0.92358 0.86980 1.44676 1.00612 1.68550 1.19919 1.19259 0.90298 1.34926 0.91757 0.90088 1.25703 0.98516 1.02032 0.99354 1.70129 1.10067 1.54443 1.25146 0.85218 0.77226 0.78587 0.78695 1.20508 1.22368 1.20013 0.91413 0.92554 0.93383 0.93390 0.94866 0.75002 0.87740 0.85677 0.89557 0.92553 0.89511 0.91302 0.90902 0.87990 0.87593 0.87225 0.87513 0.74849 0.91586 0.90546 0.99165 0.94022 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.59 71.98 0.69 -2.94 16 2 C -0.13 -4.64 5.41 30.59 0.17 -4.47 16 3 C 0.16 6.01 2.94 45.34 0.13 6.14 16 4 H 0.05 1.83 7.71 -2.38 -0.02 1.81 16 5 C 0.16 5.28 2.03 46.18 0.09 5.38 16 6 H 0.07 2.82 7.19 -2.39 -0.02 2.80 16 7 N -0.71 -16.82 4.92 -436.91 -2.15 -18.97 16 8 C 0.51 11.85 7.83 87.66 0.69 12.54 16 9 O -0.59 -19.04 15.63 -3.03 -0.05 -19.09 16 10 C -0.13 -1.67 5.27 29.85 0.16 -1.51 16 11 C -0.10 -1.28 3.67 30.59 0.11 -1.17 16 12 C 0.16 1.26 0.87 4.06 0.00 1.26 16 13 C -0.16 -0.67 8.54 71.98 0.61 -0.05 16 14 C -0.12 -0.72 6.21 31.65 0.20 -0.53 16 15 C -0.16 -1.72 6.86 30.59 0.21 -1.51 16 16 C 0.51 9.33 8.43 87.90 0.74 10.07 16 17 O -0.59 -17.08 18.03 -3.03 -0.05 -17.14 16 18 N -0.71 -8.37 4.87 -419.98 -2.05 -10.41 16 19 C -0.14 -5.22 6.77 31.99 0.22 -5.00 16 20 C 0.18 8.91 5.42 86.85 0.47 9.38 16 21 N -0.61 -30.24 3.13 -668.26 -2.09 -32.33 16 22 C -0.23 -12.62 9.75 84.04 0.82 -11.80 16 23 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 24 C -0.06 -3.51 5.47 84.86 0.46 -3.04 16 25 N -0.95 -56.77 10.56 21.65 0.23 -56.54 16 26 Si 0.97 45.09 29.55 68.60 2.03 47.12 16 27 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 30 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 31 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.05 1.33 7.42 -2.39 -0.02 1.31 16 33 H 0.05 1.90 7.90 -2.38 -0.02 1.88 16 34 H 0.03 1.35 8.06 -2.39 -0.02 1.33 16 35 H 0.41 7.39 8.37 -92.71 -0.78 6.61 16 36 H 0.10 1.07 7.39 -2.39 -0.02 1.05 16 37 H 0.13 0.88 6.55 -2.39 -0.02 0.87 16 38 H 0.09 1.12 8.10 -2.39 -0.02 1.10 16 39 H 0.06 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 41 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.07 0.24 6.55 -2.39 -0.02 0.22 16 43 H 0.10 0.34 7.91 -2.39 -0.02 0.32 16 44 H 0.11 0.47 7.89 -2.39 -0.02 0.45 16 45 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.41 4.08 8.65 -92.71 -0.80 3.28 16 48 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 50 H -0.01 -0.54 8.07 -2.39 -0.02 -0.56 16 51 H 0.04 2.30 6.90 -2.39 -0.02 2.28 16 52 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -77.95 407.09 0.98 -76.97 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -0.66 Total: 17.64 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 5.77 Total: 12.75 kcal Atomic # 7 Polarization: -112.19 SS G_CDS: -6.06 Total: -118.25 kcal Atomic # 8 Polarization: -36.13 SS G_CDS: -0.10 Total: -36.23 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -77.95 0.98 -76.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489149508.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.457 kcal (2) G-P(sol) polarization free energy of solvation -77.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds