Wall clock time and date at job start Tue Mar 31 2020 20:26:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 C 1.52997 * 109.47662 * 64.99579 * 5 3 2 7 7 C 1.53001 * 109.47047 * 120.00002 * 3 2 1 8 8 C 1.50705 * 109.47102 * 295.00097 * 7 3 2 9 9 O 1.21286 * 119.99696 * 0.02562 * 8 7 3 10 10 N 1.34770 * 119.99943 * 179.97438 * 8 7 3 11 11 C 1.46493 * 120.00151 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.27592 * 325.70677 * 11 10 8 13 13 C 1.54597 * 110.30898 * 87.79639 * 11 10 8 14 14 C 1.55187 * 102.80285 * 96.98106 * 13 11 10 15 15 N 1.48530 * 103.23935 * 37.43891 * 14 13 11 16 16 C 1.46900 * 111.00131 * 200.25872 * 15 14 13 17 17 C 1.50702 * 109.46867 * 287.39086 * 16 15 14 18 18 O 1.21292 * 119.99974 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00003 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99806 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99549 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00239 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99838 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46916 * 60.00044 * 24 22 20 26 26 H 1.48499 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47205 * 299.99985 * 24 22 20 28 28 C 1.47908 * 105.81738 * 320.76807 * 15 14 13 29 29 H 1.08999 * 109.91409 * 265.97797 * 28 15 14 30 30 C 1.52997 * 109.91450 * 144.68616 * 28 15 14 31 31 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 33 33 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 34 34 H 1.09005 * 109.47349 * 185.00043 * 5 3 2 35 35 H 1.09006 * 109.47045 * 304.99625 * 5 3 2 36 36 H 1.08995 * 109.47515 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.47117 * 300.00605 * 6 5 3 38 38 H 1.09006 * 109.46853 * 59.99928 * 6 5 3 39 39 H 1.08995 * 109.46946 * 55.00366 * 7 3 2 40 40 H 1.08999 * 109.46868 * 175.00678 * 7 3 2 41 41 H 0.97003 * 119.99912 * 0.02562 * 10 8 7 42 42 H 1.09003 * 110.72451 * 215.31977 * 13 11 10 43 43 H 1.09002 * 110.72104 * 338.60140 * 13 11 10 44 44 H 1.09001 * 110.68595 * 278.98667 * 14 13 11 45 45 H 1.09004 * 110.78443 * 155.93583 * 14 13 11 46 46 H 1.08998 * 109.47326 * 47.38897 * 16 15 14 47 47 H 1.09000 * 109.47195 * 167.39435 * 16 15 14 48 48 H 0.96998 * 119.99550 * 0.02562 * 19 17 16 49 49 H 0.97002 * 119.99958 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.47044 * 302.40916 * 30 28 15 51 51 H 1.08997 * 109.47568 * 62.40803 * 30 28 15 52 52 H 1.08998 * 109.46931 * 182.41411 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0697 1.4300 2.4766 9 8 0.8626 1.3990 2.3633 10 7 2.6301 1.5026 3.7002 11 6 1.7811 1.5447 4.8933 12 1 0.8622 2.0922 4.6839 13 6 1.4545 0.1109 5.3703 14 6 2.5067 -0.1285 6.4857 15 7 2.6049 1.1961 7.1505 16 6 3.8621 1.3166 7.9008 17 6 3.7933 0.4582 9.1375 18 8 2.7954 -0.1905 9.3707 19 7 4.8411 0.4106 9.9839 20 6 4.7787 -0.3707 11.1087 21 1 3.8898 -0.9477 11.3168 22 6 5.8588 -0.4194 11.9816 23 7 6.9402 0.2831 11.7286 24 14 5.7741 -1.4845 13.5138 25 1 5.5663 -2.9014 13.1208 26 1 7.0451 -1.3630 14.2720 27 1 4.6438 -1.0364 14.3663 28 6 2.5375 2.1982 6.0647 29 1 3.5442 2.4726 5.7498 30 6 1.7817 3.4382 6.5463 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9354 -0.0045 33 1 1.8500 -0.9353 -0.0004 34 1 3.5540 2.2879 -1.2055 35 1 3.5906 0.5105 -1.2952 36 1 2.6830 1.4891 -3.3852 37 1 1.4455 0.5291 -2.5390 38 1 1.4089 2.3065 -2.4493 39 1 3.5905 0.5105 1.2951 40 1 3.5539 2.2878 1.2056 41 1 3.5956 1.5270 3.7908 42 1 0.4438 0.0599 5.7752 43 1 1.5823 -0.6044 4.5578 44 1 3.4661 -0.4148 6.0549 45 1 2.1602 -0.8867 7.1880 46 1 4.6916 0.9868 7.2752 47 1 4.0152 2.3568 8.1885 48 1 5.6393 0.9292 9.7971 49 1 7.6940 0.2494 12.3382 50 1 0.7845 3.1497 6.8787 51 1 2.3230 3.8947 7.3749 52 1 1.6990 4.1537 5.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489284908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:47 Heat of formation + Delta-G solvation = -60.934942 kcal Electronic energy + Delta-G solvation = -29424.998605 eV Core-core repulsion = 25424.424149 eV Total energy + Delta-G solvation = -4000.574455 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.41960 -39.11691 -37.75476 -36.83449 -34.38430 -33.79273 -31.99891 -31.56810 -31.26627 -31.10567 -30.12911 -26.58703 -25.68109 -24.39145 -24.09397 -21.97490 -21.54446 -20.44291 -20.14705 -19.68673 -19.17233 -17.88513 -17.11334 -16.67009 -15.92091 -15.77486 -15.24323 -15.07800 -14.85058 -14.67289 -14.46811 -14.36124 -14.06221 -13.77935 -13.67572 -13.43547 -13.31630 -12.94114 -12.52850 -12.46751 -12.22250 -12.15756 -11.92048 -11.70577 -11.63443 -11.51311 -11.43823 -11.28375 -11.20216 -11.12345 -11.10803 -10.80769 -10.75842 -10.70065 -10.44077 -10.20928 -10.00087 -9.48076 -9.30557 -9.10138 -8.50388 -8.01088 -7.93648 -6.41197 -3.81880 2.26825 2.54829 2.98984 3.20293 3.25777 3.30308 3.91205 4.00048 4.24277 4.42060 4.43814 4.47893 4.55803 4.73906 4.91367 4.94253 4.98108 5.08238 5.16079 5.17775 5.19687 5.25534 5.27842 5.37492 5.40687 5.47973 5.54399 5.58792 5.64037 5.65187 5.69031 5.78939 5.82799 5.89471 5.91135 5.93820 5.98983 6.01793 6.14809 6.24508 6.31792 6.40989 6.46710 6.56835 6.75870 7.15050 7.21397 7.36270 7.55478 8.06763 8.12097 8.62806 9.18984 9.55232 10.07571 10.76581 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.001906 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.544100 B =14685.308813 C =14836.754603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.154 4.154 3 C -0.043 4.043 4 H 0.081 0.919 5 C -0.117 4.117 6 C -0.151 4.151 7 C -0.136 4.136 8 C 0.511 3.489 9 O -0.530 6.530 10 N -0.727 5.727 11 C 0.139 3.861 12 H 0.099 0.901 13 C -0.129 4.129 14 C 0.042 3.958 15 N -0.484 5.484 16 C 0.038 3.962 17 C 0.446 3.554 18 O -0.575 6.575 19 N -0.566 5.566 20 C -0.298 4.298 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.056 3.944 29 H 0.054 0.946 30 C -0.133 4.133 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.053 0.947 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.397 0.603 42 H 0.082 0.918 43 H 0.071 0.929 44 H 0.036 0.964 45 H 0.099 0.901 46 H 0.048 0.952 47 H 0.088 0.912 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.066 0.934 51 H 0.059 0.941 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.351 5.346 -25.128 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.172 4.172 3 C -0.062 4.062 4 H 0.099 0.901 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.176 4.176 8 C 0.298 3.702 9 O -0.405 6.405 10 N -0.379 5.379 11 C 0.034 3.966 12 H 0.117 0.883 13 C -0.168 4.168 14 C -0.086 4.086 15 N -0.209 5.209 16 C -0.094 4.094 17 C 0.231 3.769 18 O -0.459 6.459 19 N -0.203 5.203 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.180 4.180 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.054 4.054 29 H 0.072 0.928 30 C -0.191 4.191 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.231 0.769 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.055 0.945 45 H 0.117 0.883 46 H 0.066 0.934 47 H 0.106 0.894 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.085 0.915 51 H 0.078 0.922 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.147 4.982 -24.550 25.793 hybrid contribution 1.933 -0.325 0.366 1.994 sum -4.214 4.657 -24.184 24.986 Atomic orbital electron populations 1.23695 0.95917 1.01312 0.98961 1.22615 0.95995 0.97024 1.01538 1.20147 0.96524 0.97129 0.92416 0.90092 1.21545 0.97868 1.01963 0.94038 1.21758 0.99830 1.02157 0.97106 1.21739 0.98758 1.04315 0.92799 1.20661 0.89292 0.75802 0.84470 1.90717 1.14709 1.48521 1.86588 1.46253 1.10098 1.75700 1.05847 1.21859 0.94282 0.97091 0.83389 0.88341 1.22931 1.00447 0.95605 0.97827 1.23326 0.97083 0.92774 0.95394 1.64457 1.33782 1.02359 1.20304 1.22064 0.90485 1.01066 0.95767 1.19685 0.84968 0.86571 0.85697 1.90513 1.31945 1.47285 1.76142 1.41851 1.15140 1.42143 1.21185 1.19644 1.02199 1.22421 0.98496 0.87995 1.25247 0.95048 0.98026 0.99638 1.69604 1.05166 1.41225 1.38490 0.85924 0.77376 0.80057 0.80900 1.19961 1.21007 1.19894 1.22656 0.98137 0.94117 0.90459 0.92778 1.21710 1.01324 0.95271 1.00758 0.88661 0.89229 0.88139 0.91833 0.91820 0.92915 0.92372 0.92819 0.88886 0.88855 0.76893 0.89921 0.91054 0.94548 0.88277 0.93387 0.89425 0.77579 0.91876 0.91469 0.92151 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 13.22 29.02 0.38 -1.17 16 2 C -0.15 -1.35 6.76 -36.02 -0.24 -1.59 16 3 C -0.04 -0.33 1.82 -91.77 -0.17 -0.50 16 4 H 0.08 0.73 7.60 -51.92 -0.39 0.34 16 5 C -0.12 -0.69 5.39 -26.74 -0.14 -0.83 16 6 C -0.15 -0.91 9.73 37.16 0.36 -0.55 16 7 C -0.14 -0.94 5.16 -27.88 -0.14 -1.09 16 8 C 0.51 5.22 7.58 -10.99 -0.08 5.14 16 9 O -0.53 -7.21 13.84 5.55 0.08 -7.14 16 10 N -0.73 -6.91 5.07 -52.49 -0.27 -7.18 16 11 C 0.14 1.63 2.95 -66.58 -0.20 1.44 16 12 H 0.10 1.27 7.14 -51.93 -0.37 0.90 16 13 C -0.13 -1.71 6.80 -24.73 -0.17 -1.88 16 14 C 0.04 0.65 5.94 -1.76 -0.01 0.64 16 15 N -0.48 -7.83 4.54 -223.84 -1.02 -8.84 16 16 C 0.04 0.66 5.19 -4.97 -0.03 0.63 16 17 C 0.45 10.43 7.61 -10.98 -0.08 10.34 16 18 O -0.58 -15.49 14.64 5.55 0.08 -15.41 16 19 N -0.57 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.45 13.05 55.50 0.72 -23.73 16 24 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 C 0.06 0.68 2.83 -66.64 -0.19 0.50 16 29 H 0.05 0.59 7.25 -51.93 -0.38 0.22 16 30 C -0.13 -1.55 9.32 37.16 0.35 -1.20 16 31 H 0.10 0.97 7.83 -52.49 -0.41 0.56 16 32 H 0.09 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.06 0.38 7.38 -51.93 -0.38 0.00 16 38 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.40 2.95 8.31 -40.82 -0.34 2.61 16 42 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 43 H 0.07 0.92 8.05 -51.93 -0.42 0.50 16 44 H 0.04 0.54 7.81 -51.93 -0.41 0.13 16 45 H 0.10 1.86 7.10 -51.93 -0.37 1.49 16 46 H 0.05 0.75 7.83 -51.93 -0.41 0.34 16 47 H 0.09 1.39 8.08 -51.93 -0.42 0.97 16 48 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 49 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 52 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 418.05 15.07 6.30 6.30 Total: -1.00 -32.31 418.05 -8.99 -41.30 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -9.20 Total: 11.02 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -0.60 Total: 1.95 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: -0.62 Total: -54.05 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.55 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -32.31 -8.99 -41.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489284908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.638 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds