Wall clock time and date at job start Tue Mar 31 2020 20:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50702 * 120.00204 * 2 1 4 4 H 1.09007 * 109.46862 * 0.02562 * 3 2 1 5 5 C 1.52993 * 109.47475 * 240.00406 * 3 2 1 6 6 C 1.52997 * 109.47662 * 64.99579 * 5 3 2 7 7 C 1.53001 * 109.47047 * 120.00002 * 3 2 1 8 8 C 1.50705 * 109.47102 * 295.00097 * 7 3 2 9 9 O 1.21286 * 119.99696 * 0.02562 * 8 7 3 10 10 N 1.34770 * 119.99943 * 179.97438 * 8 7 3 11 11 C 1.46493 * 120.00151 * 180.02562 * 10 8 7 12 12 H 1.08999 * 110.27592 * 325.70677 * 11 10 8 13 13 C 1.54597 * 110.30898 * 87.79639 * 11 10 8 14 14 C 1.55187 * 102.80285 * 96.98106 * 13 11 10 15 15 N 1.48530 * 103.23935 * 37.43891 * 14 13 11 16 16 C 1.46900 * 111.00131 * 200.25872 * 15 14 13 17 17 C 1.50702 * 109.46867 * 287.39086 * 16 15 14 18 18 O 1.21292 * 119.99974 * 0.02562 * 17 16 15 19 19 N 1.34779 * 120.00003 * 179.97438 * 17 16 15 20 20 C 1.37103 * 119.99804 * 180.02562 * 19 17 16 21 21 H 1.07995 * 119.99806 * 359.97438 * 20 19 17 22 22 C 1.38949 * 119.99549 * 180.02562 * 20 19 17 23 23 N 1.31414 * 120.00239 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99838 * 180.02562 * 22 20 19 25 25 H 1.48505 * 109.46916 * 60.00044 * 24 22 20 26 26 H 1.48499 * 109.47202 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47205 * 299.99985 * 24 22 20 28 28 C 1.47908 * 105.81738 * 320.76807 * 15 14 13 29 29 H 1.08999 * 109.91409 * 265.97797 * 28 15 14 30 30 C 1.52997 * 109.91450 * 144.68616 * 28 15 14 31 31 H 1.08002 * 120.00352 * 0.02562 * 1 2 3 32 32 H 1.08005 * 119.99880 * 179.72197 * 1 2 3 33 33 H 1.08002 * 120.00350 * 180.02562 * 2 1 3 34 34 H 1.09005 * 109.47349 * 185.00043 * 5 3 2 35 35 H 1.09006 * 109.47045 * 304.99625 * 5 3 2 36 36 H 1.08995 * 109.47515 * 179.97438 * 6 5 3 37 37 H 1.09005 * 109.47117 * 300.00605 * 6 5 3 38 38 H 1.09006 * 109.46853 * 59.99928 * 6 5 3 39 39 H 1.08995 * 109.46946 * 55.00366 * 7 3 2 40 40 H 1.08999 * 109.46868 * 175.00678 * 7 3 2 41 41 H 0.97003 * 119.99912 * 0.02562 * 10 8 7 42 42 H 1.09003 * 110.72451 * 215.31977 * 13 11 10 43 43 H 1.09002 * 110.72104 * 338.60140 * 13 11 10 44 44 H 1.09001 * 110.68595 * 278.98667 * 14 13 11 45 45 H 1.09004 * 110.78443 * 155.93583 * 14 13 11 46 46 H 1.08998 * 109.47326 * 47.38897 * 16 15 14 47 47 H 1.09000 * 109.47195 * 167.39435 * 16 15 14 48 48 H 0.96998 * 119.99550 * 0.02562 * 19 17 16 49 49 H 0.97002 * 119.99958 * 179.97438 * 23 22 20 50 50 H 1.09001 * 109.47044 * 302.40916 * 30 28 15 51 51 H 1.08997 * 109.47568 * 62.40803 * 30 28 15 52 52 H 1.08998 * 109.46931 * 182.41411 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3862 -1.2492 6 6 2.0564 1.4308 -2.4953 7 6 2.9431 1.3861 1.2493 8 6 2.0697 1.4300 2.4766 9 8 0.8626 1.3990 2.3633 10 7 2.6301 1.5026 3.7002 11 6 1.7811 1.5447 4.8933 12 1 0.8622 2.0922 4.6839 13 6 1.4545 0.1109 5.3703 14 6 2.5067 -0.1285 6.4857 15 7 2.6049 1.1961 7.1505 16 6 3.8621 1.3166 7.9008 17 6 3.7933 0.4582 9.1375 18 8 2.7954 -0.1905 9.3707 19 7 4.8411 0.4106 9.9839 20 6 4.7787 -0.3707 11.1087 21 1 3.8898 -0.9477 11.3168 22 6 5.8588 -0.4194 11.9816 23 7 6.9402 0.2831 11.7286 24 14 5.7741 -1.4845 13.5138 25 1 5.5663 -2.9014 13.1208 26 1 7.0451 -1.3630 14.2720 27 1 4.6438 -1.0364 14.3663 28 6 2.5375 2.1982 6.0647 29 1 3.5442 2.4726 5.7498 30 6 1.7817 3.4382 6.5463 31 1 -0.5401 0.9353 -0.0004 32 1 -0.5400 -0.9354 -0.0045 33 1 1.8500 -0.9353 -0.0004 34 1 3.5540 2.2879 -1.2055 35 1 3.5906 0.5105 -1.2952 36 1 2.6830 1.4891 -3.3852 37 1 1.4455 0.5291 -2.5390 38 1 1.4089 2.3065 -2.4493 39 1 3.5905 0.5105 1.2951 40 1 3.5539 2.2878 1.2056 41 1 3.5956 1.5270 3.7908 42 1 0.4438 0.0599 5.7752 43 1 1.5823 -0.6044 4.5578 44 1 3.4661 -0.4148 6.0549 45 1 2.1602 -0.8867 7.1880 46 1 4.6916 0.9868 7.2752 47 1 4.0152 2.3568 8.1885 48 1 5.6393 0.9292 9.7971 49 1 7.6940 0.2494 12.3382 50 1 0.7845 3.1497 6.8787 51 1 2.3230 3.8947 7.3749 52 1 1.6990 4.1537 5.7281 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489284908.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:46 Heat of formation + Delta-G solvation = -83.139863 kcal Electronic energy + Delta-G solvation = -29425.961482 eV Core-core repulsion = 25424.424149 eV Total energy + Delta-G solvation = -4001.537333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.37341 -40.36071 -39.29314 -37.55143 -35.98191 -35.20749 -33.29390 -32.62299 -32.41287 -32.29125 -30.92418 -28.11142 -26.67881 -25.82185 -25.13399 -22.71481 -22.45562 -21.43084 -21.22662 -20.78798 -20.36106 -19.86364 -18.04590 -17.71092 -17.42241 -16.63724 -16.51206 -16.31308 -16.12973 -15.85739 -15.63908 -15.36104 -15.18153 -15.07058 -14.70575 -14.44658 -14.25948 -13.95277 -13.79161 -13.63627 -13.46082 -13.00268 -12.97691 -12.96717 -12.88063 -12.68715 -12.43231 -12.39300 -12.31935 -12.17238 -12.12418 -12.07128 -12.01730 -11.73844 -11.65407 -11.46792 -11.33433 -10.82105 -10.30903 -10.07157 -9.99077 -9.92691 -9.32310 -8.45272 -5.93472 1.39867 1.41676 1.52201 1.56523 1.78066 2.08279 2.17842 2.30493 2.81624 3.21454 3.35190 3.48508 3.74602 3.84230 3.88389 3.94783 4.05600 4.17449 4.28766 4.33075 4.39421 4.41622 4.42833 4.46550 4.48406 4.54704 4.63015 4.69747 4.74733 4.80545 4.86032 4.92805 5.02236 5.03958 5.05781 5.09283 5.10047 5.12715 5.21559 5.37001 5.41822 5.42133 5.48625 5.53325 5.86454 5.86879 5.98919 6.07540 6.12511 6.62758 6.63616 7.15111 7.37355 7.58974 8.15714 8.71859 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023712 B = 0.001906 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.544100 B =14685.308813 C =14836.754603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 C -0.043 4.043 4 H 0.062 0.938 5 C -0.111 4.111 6 C -0.153 4.153 7 C -0.129 4.129 8 C 0.507 3.493 9 O -0.568 6.568 10 N -0.717 5.717 11 C 0.150 3.850 12 H 0.089 0.911 13 C -0.120 4.120 14 C 0.046 3.954 15 N -0.509 5.509 16 C 0.052 3.948 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.274 1.274 28 C 0.061 3.939 29 H 0.081 0.919 30 C -0.131 4.131 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.109 0.891 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.048 0.952 38 H 0.047 0.953 39 H 0.113 0.887 40 H 0.121 0.879 41 H 0.411 0.589 42 H 0.068 0.932 43 H 0.076 0.924 44 H 0.049 0.951 45 H 0.058 0.942 46 H 0.075 0.925 47 H 0.109 0.891 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.050 0.950 51 H 0.057 0.943 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 6.292 -26.454 27.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.166 4.166 3 C -0.062 4.062 4 H 0.081 0.919 5 C -0.149 4.149 6 C -0.210 4.210 7 C -0.168 4.168 8 C 0.296 3.704 9 O -0.447 6.447 10 N -0.370 5.370 11 C 0.044 3.956 12 H 0.107 0.893 13 C -0.160 4.160 14 C -0.082 4.082 15 N -0.234 5.234 16 C -0.080 4.080 17 C 0.229 3.771 18 O -0.502 6.502 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.047 4.047 29 H 0.098 0.902 30 C -0.189 4.189 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.127 0.873 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.248 0.752 42 H 0.087 0.913 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.076 0.924 46 H 0.093 0.907 47 H 0.127 0.873 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.957 5.952 -25.899 26.867 hybrid contribution 1.207 -0.617 0.740 1.545 sum -2.750 5.335 -25.158 25.865 Atomic orbital electron populations 1.23683 0.96564 1.00843 1.00840 1.22852 0.95805 0.98109 0.99855 1.20147 0.96571 0.95626 0.93857 0.91917 1.21520 0.97555 1.03114 0.92661 1.21770 0.99929 1.01456 0.97868 1.21776 0.98248 1.06570 0.90248 1.21300 0.89175 0.74657 0.85311 1.90720 1.16628 1.50208 1.87101 1.46124 1.10619 1.75260 1.04952 1.21570 0.94379 0.95495 0.84131 0.89323 1.22821 0.99019 0.97034 0.97089 1.23167 0.98146 0.91879 0.94998 1.64358 1.33393 1.03409 1.22235 1.21916 0.92052 1.00678 0.93341 1.20793 0.83585 0.85995 0.86722 1.90491 1.33386 1.48969 1.77387 1.41910 1.15922 1.42303 1.21146 1.19592 1.02111 1.23970 1.00510 0.90535 1.25985 0.94400 0.98866 1.01935 1.69658 1.05437 1.41611 1.39369 0.85028 0.77802 0.78292 0.77447 1.19831 1.19423 1.19890 1.22685 0.99681 0.93099 0.89250 0.90151 1.21714 1.00270 0.95398 1.01520 0.89923 0.89115 0.87281 0.90369 0.90875 0.91916 0.93333 0.93349 0.86895 0.86083 0.75187 0.91313 0.90567 0.93281 0.92389 0.90728 0.87254 0.77007 0.91341 0.93060 0.92354 0.90437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 13.22 67.79 0.90 -2.69 16 2 C -0.15 -2.46 6.76 25.65 0.17 -2.29 16 3 C -0.04 -0.57 1.82 -11.54 -0.02 -0.59 16 4 H 0.06 1.08 7.60 -2.38 -0.02 1.06 16 5 C -0.11 -1.01 5.39 30.59 0.16 -0.84 16 6 C -0.15 -1.61 9.73 71.98 0.70 -0.91 16 7 C -0.13 -1.36 5.16 29.85 0.15 -1.20 16 8 C 0.51 9.22 7.58 87.66 0.66 9.89 16 9 O -0.57 -15.05 13.84 -3.05 -0.04 -15.09 16 10 N -0.72 -11.57 5.07 -438.38 -2.22 -13.79 16 11 C 0.15 3.28 2.95 45.87 0.14 3.41 16 12 H 0.09 2.19 7.14 -2.39 -0.02 2.17 16 13 C -0.12 -3.15 6.80 31.89 0.22 -2.93 16 14 C 0.05 1.42 5.94 86.74 0.52 1.94 16 15 N -0.51 -15.92 4.54 -862.08 -3.91 -19.83 16 16 C 0.05 1.71 5.19 85.56 0.44 2.15 16 17 C 0.44 20.86 7.61 87.66 0.67 21.52 16 18 O -0.62 -34.32 14.64 -3.07 -0.04 -34.36 16 19 N -0.57 -29.23 5.29 -306.98 -1.62 -30.85 16 20 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 23 N -0.92 -49.19 13.05 21.66 0.28 -48.91 16 24 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 27 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.06 1.36 2.83 45.06 0.13 1.49 16 29 H 0.08 1.41 7.25 -2.39 -0.02 1.40 16 30 C -0.13 -2.80 9.32 71.98 0.67 -2.13 16 31 H 0.08 1.80 7.83 -2.91 -0.02 1.77 16 32 H 0.09 1.67 8.06 -2.91 -0.02 1.65 16 33 H 0.11 1.61 8.06 -2.91 -0.02 1.58 16 34 H 0.08 0.52 8.14 -2.38 -0.02 0.50 16 35 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.05 0.60 7.38 -2.38 -0.02 0.58 16 38 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 39 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 40 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.41 4.41 8.31 -92.71 -0.77 3.64 16 42 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 1.91 8.05 -2.39 -0.02 1.89 16 44 H 0.05 1.38 7.81 -2.39 -0.02 1.36 16 45 H 0.06 2.28 7.10 -2.38 -0.02 2.26 16 46 H 0.07 2.11 7.83 -2.39 -0.02 2.09 16 47 H 0.11 3.18 8.08 -2.39 -0.02 3.16 16 48 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 49 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 50 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 51 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 52 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -72.43 418.05 0.66 -71.77 By element: Atomic # 1 Polarization: 38.06 SS G_CDS: -0.60 Total: 37.46 kcal Atomic # 6 Polarization: 1.82 SS G_CDS: 6.79 Total: 8.61 kcal Atomic # 7 Polarization: -105.91 SS G_CDS: -7.47 Total: -113.38 kcal Atomic # 8 Polarization: -49.37 SS G_CDS: -0.09 Total: -49.46 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -72.43 0.66 -71.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489284908.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.369 kcal (2) G-P(sol) polarization free energy of solvation -72.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds