Wall clock time and date at job start Tue Mar 31 2020 20:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99519 * 2 1 4 4 H 1.09001 * 109.47285 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47090 * 120.00074 * 3 2 1 6 6 C 1.53000 * 109.46772 * 294.44027 * 5 3 2 7 7 C 1.53007 * 109.46775 * 239.99664 * 3 2 1 8 8 C 1.50697 * 109.47291 * 66.13539 * 7 3 2 9 9 O 1.21280 * 119.99816 * 5.78268 * 8 7 3 10 10 N 1.34775 * 120.00168 * 185.78418 * 8 7 3 11 11 C 1.46500 * 120.00021 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.37139 * 324.27131 * 11 10 8 13 13 C 1.54260 * 110.32454 * 86.45169 * 11 10 8 14 14 C 1.54377 * 105.14931 * 118.94513 * 13 11 10 15 15 N 1.48561 * 104.59584 * 23.80094 * 14 13 11 16 16 C 1.46895 * 111.00508 * 200.95568 * 15 14 13 17 17 C 1.50703 * 109.47664 * 290.13182 * 16 15 14 18 18 O 1.21292 * 119.99435 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00133 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99715 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99988 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99806 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00049 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99585 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47344 * 60.00133 * 24 22 20 26 26 H 1.48507 * 109.46931 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47313 * 299.99888 * 24 22 20 28 28 C 1.48557 * 104.22133 * 320.51641 * 15 14 13 29 29 H 1.08996 * 110.41331 * 280.70127 * 28 15 14 30 30 C 1.53004 * 110.40807 * 158.25587 * 28 15 14 31 31 H 1.08000 * 120.00191 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99910 * 0.02562 * 1 2 3 33 33 H 1.07994 * 120.00442 * 179.97438 * 2 1 3 34 34 H 1.08996 * 109.47636 * 54.44244 * 5 3 2 35 35 H 1.09003 * 109.46768 * 174.44533 * 5 3 2 36 36 H 1.08999 * 109.47288 * 305.46716 * 6 5 3 37 37 H 1.09001 * 109.47054 * 65.46410 * 6 5 3 38 38 H 1.08999 * 109.47384 * 185.46481 * 6 5 3 39 39 H 1.09000 * 109.46956 * 306.13782 * 7 3 2 40 40 H 1.08996 * 109.46885 * 186.14068 * 7 3 2 41 41 H 0.96998 * 119.99794 * 359.97438 * 10 8 7 42 42 H 1.09003 * 110.32365 * 0.02562 * 13 11 10 43 43 H 1.08992 * 110.32587 * 237.89336 * 13 11 10 44 44 H 1.08999 * 110.41580 * 142.57988 * 14 13 11 45 45 H 1.08998 * 110.41573 * 264.90855 * 14 13 11 46 46 H 1.09008 * 109.46609 * 50.12617 * 16 15 14 47 47 H 1.09000 * 109.47359 * 170.12504 * 16 15 14 48 48 H 0.96999 * 120.00239 * 359.97438 * 19 17 16 49 49 H 0.96997 * 120.00479 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.47070 * 61.46157 * 30 28 15 51 51 H 1.09003 * 109.46922 * 181.45269 * 30 28 15 52 52 H 1.08994 * 109.47837 * 301.45323 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9431 1.3863 1.2492 6 6 2.0561 1.4448 2.4945 7 6 2.9431 1.3862 -1.2493 8 6 2.0695 1.4581 -2.4751 9 8 0.8660 1.5515 -2.3573 10 7 2.6255 1.4184 -3.7022 11 6 1.7762 1.4888 -4.8938 12 1 0.8368 0.9634 -4.7218 13 6 1.5058 2.9595 -5.2729 14 6 2.0980 3.1265 -6.6887 15 7 2.1075 1.7531 -7.2550 16 6 3.0669 1.6467 -8.3622 17 6 2.5581 2.4299 -9.5450 18 8 1.5000 3.0184 -9.4728 19 7 3.2788 2.4763 -10.6829 20 6 2.8156 3.1884 -11.7591 21 1 1.8735 3.7124 -11.6948 22 6 3.5589 3.2367 -12.9321 23 7 4.7060 2.6004 -13.0098 24 14 2.9274 4.2063 -14.3985 25 1 2.7663 5.6323 -14.0169 26 1 3.8979 4.0994 -15.5176 27 1 1.6159 3.6574 -14.8273 28 6 2.5124 0.8911 -6.1149 29 1 3.5916 0.9362 -5.9688 30 6 2.0645 -0.5526 -6.3522 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8501 -0.9352 0.0004 34 1 3.5836 0.5059 1.3005 35 1 3.5610 2.2829 1.2008 36 1 1.3490 2.2689 2.3986 37 1 1.5096 0.5072 2.5957 38 1 2.6776 1.6001 3.3764 39 1 3.5763 0.5008 -1.3058 40 1 3.5685 2.2773 -1.1960 41 1 3.5880 1.3440 -3.7963 42 1 2.0054 3.6290 -4.5726 43 1 0.4339 3.1564 -5.2852 44 1 1.4670 3.7812 -7.2899 45 1 3.1116 3.5234 -6.6326 46 1 4.0304 2.0483 -8.0479 47 1 3.1836 0.5999 -8.6426 48 1 4.1252 2.0060 -10.7405 49 1 5.2247 2.6338 -13.8287 50 1 2.5461 -0.9394 -7.2502 51 1 2.3462 -1.1657 -5.4962 52 1 0.9824 -0.5812 -6.4792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489284909.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:49 Heat of formation + Delta-G solvation = -61.536810 kcal Electronic energy + Delta-G solvation = -29303.271191 eV Core-core repulsion = 25302.670637 eV Total energy + Delta-G solvation = -4000.600554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.37338 -39.11989 -37.74258 -36.85082 -34.44721 -33.80364 -32.03484 -31.58123 -31.28261 -31.12194 -30.07996 -26.57156 -25.66144 -24.42272 -24.09696 -21.98615 -21.44865 -20.47689 -20.21619 -19.71046 -19.11813 -17.87497 -17.11450 -16.63295 -15.89535 -15.79418 -15.25041 -15.14263 -14.78755 -14.69040 -14.51957 -14.24311 -14.08245 -13.80994 -13.76469 -13.37819 -13.33969 -13.14351 -12.51316 -12.44513 -12.22576 -12.20832 -11.87895 -11.66002 -11.65130 -11.52336 -11.44547 -11.31286 -11.20764 -11.13453 -11.09702 -10.79305 -10.77141 -10.59002 -10.43730 -10.20776 -9.96491 -9.48056 -9.38785 -9.09869 -8.52231 -8.04173 -7.94108 -6.41081 -3.81782 2.22503 2.55447 2.97400 3.20571 3.26065 3.30691 3.91032 4.03611 4.24991 4.40363 4.43757 4.46929 4.56314 4.73133 4.90805 4.93426 5.03561 5.06347 5.12937 5.16953 5.18904 5.24947 5.27993 5.36673 5.38487 5.48619 5.53244 5.58480 5.63394 5.64440 5.69937 5.77585 5.81035 5.90053 5.90379 5.90997 5.98702 6.04692 6.17272 6.22402 6.31727 6.42180 6.47150 6.53436 6.72323 7.12047 7.19145 7.37321 7.55642 8.06731 8.13056 8.62661 9.18936 9.55095 10.07295 10.76680 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.001791 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.607286 B =15633.548869 C =15667.368126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.155 4.155 3 C -0.045 4.045 4 H 0.083 0.917 5 C -0.116 4.116 6 C -0.151 4.151 7 C -0.135 4.135 8 C 0.512 3.488 9 O -0.529 6.529 10 N -0.727 5.727 11 C 0.147 3.853 12 H 0.100 0.900 13 C -0.132 4.132 14 C 0.038 3.962 15 N -0.477 5.477 16 C 0.036 3.964 17 C 0.445 3.555 18 O -0.576 6.576 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.051 3.949 29 H 0.053 0.947 30 C -0.135 4.135 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.091 0.909 40 H 0.094 0.906 41 H 0.397 0.603 42 H 0.068 0.932 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.089 0.911 48 H 0.391 0.609 49 H 0.272 0.728 50 H 0.059 0.941 51 H 0.055 0.945 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.935 -5.972 26.811 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.173 4.173 3 C -0.064 4.064 4 H 0.102 0.898 5 C -0.154 4.154 6 C -0.208 4.208 7 C -0.175 4.175 8 C 0.298 3.702 9 O -0.405 6.405 10 N -0.379 5.379 11 C 0.042 3.958 12 H 0.118 0.882 13 C -0.171 4.171 14 C -0.090 4.090 15 N -0.201 5.201 16 C -0.096 4.096 17 C 0.230 3.770 18 O -0.460 6.460 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.200 1.200 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.058 4.058 29 H 0.070 0.930 30 C -0.193 4.193 31 H 0.108 0.892 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.109 0.891 40 H 0.113 0.887 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.096 0.904 44 H 0.119 0.881 45 H 0.055 0.945 46 H 0.067 0.933 47 H 0.108 0.892 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.074 0.926 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.051 -5.672 26.542 27.142 hybrid contribution 1.773 0.288 -0.798 1.965 sum 1.722 -5.384 25.745 26.358 Atomic orbital electron populations 1.23752 0.95969 1.01461 0.98926 1.22654 0.95991 0.97080 1.01618 1.20175 0.96615 0.97173 0.92414 0.89849 1.21543 0.97850 1.01929 0.94046 1.21754 0.99800 1.02144 0.97118 1.21733 0.98718 1.04252 0.92833 1.20643 0.89216 0.75893 0.84457 1.90715 1.14965 1.48249 1.86563 1.46198 1.10432 1.75569 1.05684 1.21763 0.94494 0.96531 0.82979 0.88247 1.22735 1.02384 0.95641 0.96312 1.23163 0.99890 0.91619 0.94297 1.65112 1.45188 1.05400 1.04397 1.22068 0.93489 1.01452 0.92605 1.19667 0.86810 0.86200 0.84275 1.90511 1.23634 1.48777 1.83066 1.41844 1.21243 1.45996 1.11130 1.19651 1.06303 1.26769 0.90098 0.87978 1.25246 0.95620 0.97910 0.99145 1.69597 1.13090 1.42902 1.28845 0.85922 0.78382 0.79879 0.80057 1.19951 1.21001 1.19894 1.22914 0.97233 0.94965 0.90672 0.92956 1.21703 1.02738 0.93594 1.01247 0.89175 0.88502 0.88107 0.91854 0.91826 0.92726 0.92489 0.92924 0.89066 0.88733 0.76909 0.91368 0.90372 0.88059 0.94495 0.93347 0.89243 0.77553 0.91865 0.92197 0.92600 0.91429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 13.42 29.01 0.39 -1.14 16 2 C -0.16 -1.30 7.00 -36.02 -0.25 -1.55 16 3 C -0.04 -0.34 1.80 -91.77 -0.17 -0.50 16 4 H 0.08 0.77 7.47 -51.93 -0.39 0.38 16 5 C -0.12 -0.66 5.39 -26.73 -0.14 -0.81 16 6 C -0.15 -0.89 9.64 37.16 0.36 -0.53 16 7 C -0.14 -0.90 5.15 -27.88 -0.14 -1.05 16 8 C 0.51 5.19 7.51 -10.99 -0.08 5.11 16 9 O -0.53 -7.34 14.17 5.56 0.08 -7.26 16 10 N -0.73 -6.74 5.04 -52.35 -0.26 -7.00 16 11 C 0.15 1.77 2.92 -66.42 -0.19 1.58 16 12 H 0.10 1.38 7.36 -51.93 -0.38 0.99 16 13 C -0.13 -1.76 6.77 -25.35 -0.17 -1.93 16 14 C 0.04 0.61 5.80 -2.18 -0.01 0.60 16 15 N -0.48 -7.83 4.74 -223.42 -1.06 -8.89 16 16 C 0.04 0.63 5.24 -4.98 -0.03 0.60 16 17 C 0.45 10.48 7.58 -10.99 -0.08 10.39 16 18 O -0.58 -15.55 14.42 5.55 0.08 -15.47 16 19 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 24 Si 0.93 21.09 29.55 -169.99 -5.02 16.07 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 C 0.05 0.64 2.60 -65.95 -0.17 0.46 16 29 H 0.05 0.57 7.60 -51.93 -0.39 0.18 16 30 C -0.14 -1.55 9.34 37.16 0.35 -1.21 16 31 H 0.09 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.10 0.99 7.83 -52.48 -0.41 0.58 16 33 H 0.10 0.75 8.06 -52.49 -0.42 0.33 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.06 0.36 7.58 -51.93 -0.39 -0.04 16 38 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 39 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.40 2.67 8.35 -40.82 -0.34 2.33 16 42 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.10 1.94 6.91 -51.93 -0.36 1.58 16 45 H 0.04 0.56 7.83 -51.93 -0.41 0.15 16 46 H 0.05 0.77 7.88 -51.92 -0.41 0.36 16 47 H 0.09 1.43 7.28 -51.93 -0.38 1.06 16 48 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 49 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 50 H 0.06 0.69 7.36 -51.93 -0.38 0.31 16 51 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 52 H 0.07 0.85 8.12 -51.93 -0.42 0.43 16 LS Contribution 417.05 15.07 6.28 6.28 Total: -1.00 -32.51 417.05 -8.97 -41.48 By element: Atomic # 1 Polarization: 19.95 SS G_CDS: -9.14 Total: 10.81 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -0.59 Total: 2.05 kcal Atomic # 7 Polarization: -53.31 SS G_CDS: -0.66 Total: -53.97 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: 0.16 Total: -22.73 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.51 -8.97 -41.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489284909.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.054 kcal (2) G-P(sol) polarization free energy of solvation -32.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds