Wall clock time and date at job start Tue Mar 31 2020 20:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50704 * 119.99519 * 2 1 4 4 H 1.09001 * 109.47285 * 359.97438 * 3 2 1 5 5 C 1.53001 * 109.47090 * 120.00074 * 3 2 1 6 6 C 1.53000 * 109.46772 * 294.44027 * 5 3 2 7 7 C 1.53007 * 109.46775 * 239.99664 * 3 2 1 8 8 C 1.50697 * 109.47291 * 66.13539 * 7 3 2 9 9 O 1.21280 * 119.99816 * 5.78268 * 8 7 3 10 10 N 1.34775 * 120.00168 * 185.78418 * 8 7 3 11 11 C 1.46500 * 120.00021 * 180.02562 * 10 8 7 12 12 H 1.09000 * 110.37139 * 324.27131 * 11 10 8 13 13 C 1.54260 * 110.32454 * 86.45169 * 11 10 8 14 14 C 1.54377 * 105.14931 * 118.94513 * 13 11 10 15 15 N 1.48561 * 104.59584 * 23.80094 * 14 13 11 16 16 C 1.46895 * 111.00508 * 200.95568 * 15 14 13 17 17 C 1.50703 * 109.47664 * 290.13182 * 16 15 14 18 18 O 1.21292 * 119.99435 * 359.97438 * 17 16 15 19 19 N 1.34770 * 120.00133 * 179.97438 * 17 16 15 20 20 C 1.37106 * 119.99715 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99988 * 0.02562 * 20 19 17 22 22 C 1.38955 * 119.99806 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00049 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 119.99585 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47344 * 60.00133 * 24 22 20 26 26 H 1.48507 * 109.46931 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.47313 * 299.99888 * 24 22 20 28 28 C 1.48557 * 104.22133 * 320.51641 * 15 14 13 29 29 H 1.08996 * 110.41331 * 280.70127 * 28 15 14 30 30 C 1.53004 * 110.40807 * 158.25587 * 28 15 14 31 31 H 1.08000 * 120.00191 * 180.02562 * 1 2 3 32 32 H 1.08004 * 119.99910 * 0.02562 * 1 2 3 33 33 H 1.07994 * 120.00442 * 179.97438 * 2 1 3 34 34 H 1.08996 * 109.47636 * 54.44244 * 5 3 2 35 35 H 1.09003 * 109.46768 * 174.44533 * 5 3 2 36 36 H 1.08999 * 109.47288 * 305.46716 * 6 5 3 37 37 H 1.09001 * 109.47054 * 65.46410 * 6 5 3 38 38 H 1.08999 * 109.47384 * 185.46481 * 6 5 3 39 39 H 1.09000 * 109.46956 * 306.13782 * 7 3 2 40 40 H 1.08996 * 109.46885 * 186.14068 * 7 3 2 41 41 H 0.96998 * 119.99794 * 359.97438 * 10 8 7 42 42 H 1.09003 * 110.32365 * 0.02562 * 13 11 10 43 43 H 1.08992 * 110.32587 * 237.89336 * 13 11 10 44 44 H 1.08999 * 110.41580 * 142.57988 * 14 13 11 45 45 H 1.08998 * 110.41573 * 264.90855 * 14 13 11 46 46 H 1.09008 * 109.46609 * 50.12617 * 16 15 14 47 47 H 1.09000 * 109.47359 * 170.12504 * 16 15 14 48 48 H 0.96999 * 120.00239 * 359.97438 * 19 17 16 49 49 H 0.96997 * 120.00479 * 179.97438 * 23 22 20 50 50 H 1.08995 * 109.47070 * 61.46157 * 30 28 15 51 51 H 1.09003 * 109.46922 * 181.45269 * 30 28 15 52 52 H 1.08994 * 109.47837 * 301.45323 * 30 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 1 1.3551 2.1337 -0.0005 5 6 2.9431 1.3863 1.2492 6 6 2.0561 1.4448 2.4945 7 6 2.9431 1.3862 -1.2493 8 6 2.0695 1.4581 -2.4751 9 8 0.8660 1.5515 -2.3573 10 7 2.6255 1.4184 -3.7022 11 6 1.7762 1.4888 -4.8938 12 1 0.8368 0.9634 -4.7218 13 6 1.5058 2.9595 -5.2729 14 6 2.0980 3.1265 -6.6887 15 7 2.1075 1.7531 -7.2550 16 6 3.0669 1.6467 -8.3622 17 6 2.5581 2.4299 -9.5450 18 8 1.5000 3.0184 -9.4728 19 7 3.2788 2.4763 -10.6829 20 6 2.8156 3.1884 -11.7591 21 1 1.8735 3.7124 -11.6948 22 6 3.5589 3.2367 -12.9321 23 7 4.7060 2.6004 -13.0098 24 14 2.9274 4.2063 -14.3985 25 1 2.7663 5.6323 -14.0169 26 1 3.8979 4.0994 -15.5176 27 1 1.6159 3.6574 -14.8273 28 6 2.5124 0.8911 -6.1149 29 1 3.5916 0.9362 -5.9688 30 6 2.0645 -0.5526 -6.3522 31 1 -0.5400 -0.9353 0.0004 32 1 -0.5400 0.9353 -0.0004 33 1 1.8501 -0.9352 0.0004 34 1 3.5836 0.5059 1.3005 35 1 3.5610 2.2829 1.2008 36 1 1.3490 2.2689 2.3986 37 1 1.5096 0.5072 2.5957 38 1 2.6776 1.6001 3.3764 39 1 3.5763 0.5008 -1.3058 40 1 3.5685 2.2773 -1.1960 41 1 3.5880 1.3440 -3.7963 42 1 2.0054 3.6290 -4.5726 43 1 0.4339 3.1564 -5.2852 44 1 1.4670 3.7812 -7.2899 45 1 3.1116 3.5234 -6.6326 46 1 4.0304 2.0483 -8.0479 47 1 3.1836 0.5999 -8.6426 48 1 4.1252 2.0060 -10.7405 49 1 5.2247 2.6338 -13.8287 50 1 2.5461 -0.9394 -7.2502 51 1 2.3462 -1.1657 -5.4962 52 1 0.9824 -0.5812 -6.4792 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489284909.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:48 Heat of formation + Delta-G solvation = -84.337455 kcal Electronic energy + Delta-G solvation = -29304.259901 eV Core-core repulsion = 25302.670637 eV Total energy + Delta-G solvation = -4001.589265 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.33056 -40.38902 -39.27440 -37.56201 -36.00092 -35.28064 -33.31059 -32.62524 -32.47132 -32.27319 -30.88553 -28.10323 -26.65582 -25.86900 -25.13303 -22.65349 -22.43336 -21.49158 -21.28547 -20.75615 -20.35886 -19.85219 -18.02160 -17.68776 -17.47266 -16.62213 -16.49565 -16.28071 -16.18636 -15.83702 -15.63037 -15.39243 -15.21827 -15.07549 -14.66603 -14.43399 -14.40363 -14.02087 -13.80365 -13.68705 -13.46785 -13.00919 -12.97577 -12.90014 -12.85120 -12.69438 -12.45510 -12.39277 -12.35887 -12.17676 -12.12514 -12.03414 -12.00465 -11.67665 -11.65342 -11.47282 -11.32868 -10.78991 -10.33175 -10.10806 -9.99894 -9.93331 -9.39187 -8.45816 -5.94156 1.39603 1.41499 1.52069 1.55111 1.78951 2.06932 2.14212 2.30791 2.87106 3.20790 3.34125 3.43002 3.79926 3.85509 3.88363 3.95895 4.04388 4.15495 4.24554 4.33245 4.39236 4.42424 4.43197 4.45529 4.49310 4.54140 4.63011 4.69508 4.71575 4.82766 4.86243 4.90911 5.02594 5.04168 5.06497 5.10343 5.11486 5.13836 5.21676 5.35241 5.41488 5.42177 5.48457 5.51537 5.84095 5.85418 5.95839 6.07592 6.09849 6.62032 6.66097 7.14252 7.39623 7.57764 8.14431 8.71313 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.034071 B = 0.001791 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.607286 B =15633.548869 C =15667.368126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.147 4.147 3 C -0.046 4.046 4 H 0.058 0.942 5 C -0.110 4.110 6 C -0.153 4.153 7 C -0.127 4.127 8 C 0.507 3.493 9 O -0.572 6.572 10 N -0.713 5.713 11 C 0.158 3.842 12 H 0.079 0.921 13 C -0.123 4.123 14 C 0.042 3.958 15 N -0.503 5.503 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.617 6.617 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.077 0.923 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.274 1.274 28 C 0.059 3.941 29 H 0.082 0.918 30 C -0.133 4.133 31 H 0.094 0.906 32 H 0.078 0.922 33 H 0.117 0.883 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.044 0.956 37 H 0.049 0.951 38 H 0.062 0.938 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.414 0.586 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.058 0.942 45 H 0.048 0.952 46 H 0.075 0.925 47 H 0.111 0.889 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.061 0.939 51 H 0.080 0.920 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.745 -7.011 27.964 29.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.165 4.165 3 C -0.065 4.065 4 H 0.077 0.923 5 C -0.148 4.148 6 C -0.210 4.210 7 C -0.167 4.167 8 C 0.295 3.705 9 O -0.451 6.451 10 N -0.367 5.367 11 C 0.052 3.948 12 H 0.097 0.903 13 C -0.162 4.162 14 C -0.086 4.086 15 N -0.228 5.228 16 C -0.082 4.082 17 C 0.228 3.772 18 O -0.503 6.503 19 N -0.212 5.212 20 C -0.463 4.463 21 H 0.095 0.905 22 C -0.211 4.211 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.199 1.199 28 C -0.050 4.050 29 H 0.099 0.901 30 C -0.191 4.191 31 H 0.112 0.888 32 H 0.097 0.903 33 H 0.134 0.866 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.252 0.748 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.067 0.933 46 H 0.092 0.908 47 H 0.129 0.871 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.080 0.920 51 H 0.099 0.901 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.813 -6.733 27.713 28.658 hybrid contribution 0.855 0.611 -1.101 1.522 sum 3.668 -6.122 26.612 27.552 Atomic orbital electron populations 1.23732 0.96727 1.00868 1.01096 1.22903 0.95700 0.98204 0.99647 1.20177 0.96636 0.95692 0.94002 0.92348 1.21516 0.97512 1.03195 0.92533 1.21769 0.99881 1.01399 0.97972 1.21770 0.98148 1.06712 0.90024 1.21345 0.89069 0.74676 0.85402 1.90721 1.17125 1.50106 1.87130 1.46023 1.11032 1.75043 1.04559 1.21424 0.94349 0.94923 0.84096 0.90292 1.22632 1.01194 0.97233 0.95147 1.23002 0.99709 0.91105 0.94802 1.65023 1.45873 1.06168 1.05771 1.21913 0.94278 1.01469 0.90503 1.20766 0.85891 0.85347 0.85159 1.90491 1.25501 1.50359 1.83956 1.41901 1.21674 1.46248 1.11338 1.19602 1.06253 1.28490 0.91974 0.90530 1.25986 0.95662 0.98419 1.01043 1.69652 1.13508 1.43140 1.29699 0.85022 0.78020 0.78377 0.77106 1.19815 1.19373 1.19916 1.22956 0.98817 0.94423 0.88787 0.90060 1.21707 1.01565 0.93342 1.02437 0.88774 0.90329 0.86561 0.90416 0.90594 0.93731 0.93177 0.91868 0.86246 0.86314 0.74837 0.89982 0.92275 0.92330 0.93346 0.90757 0.87098 0.76982 0.91314 0.92035 0.90124 0.93295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.58 13.42 67.78 0.91 -2.67 16 2 C -0.15 -2.27 7.00 25.65 0.18 -2.09 16 3 C -0.05 -0.60 1.80 -11.54 -0.02 -0.63 16 4 H 0.06 1.07 7.47 -2.39 -0.02 1.06 16 5 C -0.11 -0.95 5.39 30.59 0.16 -0.79 16 6 C -0.15 -1.60 9.64 71.98 0.69 -0.91 16 7 C -0.13 -1.25 5.15 29.85 0.15 -1.10 16 8 C 0.51 9.21 7.51 87.66 0.66 9.87 16 9 O -0.57 -15.74 14.17 -3.03 -0.04 -15.79 16 10 N -0.71 -11.15 5.04 -437.92 -2.21 -13.36 16 11 C 0.16 3.58 2.92 45.97 0.13 3.71 16 12 H 0.08 2.17 7.36 -2.39 -0.02 2.15 16 13 C -0.12 -3.26 6.77 31.49 0.21 -3.05 16 14 C 0.04 1.34 5.80 86.45 0.50 1.84 16 15 N -0.50 -16.12 4.74 -860.78 -4.08 -20.20 16 16 C 0.05 1.68 5.24 85.56 0.45 2.13 16 17 C 0.44 21.03 7.58 87.66 0.66 21.70 16 18 O -0.62 -34.62 14.42 -3.07 -0.04 -34.67 16 19 N -0.57 -29.39 5.29 -306.98 -1.62 -31.01 16 20 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 21 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -49.29 13.05 21.66 0.28 -49.00 16 24 Si 0.99 43.12 29.55 68.60 2.03 45.15 16 25 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 26 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 27 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 28 C 0.06 1.30 2.60 45.15 0.12 1.42 16 29 H 0.08 1.39 7.60 -2.39 -0.02 1.38 16 30 C -0.13 -2.75 9.34 71.98 0.67 -2.08 16 31 H 0.09 1.64 8.06 -2.91 -0.02 1.61 16 32 H 0.08 1.75 7.83 -2.91 -0.02 1.73 16 33 H 0.12 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.05 0.58 7.58 -2.39 -0.02 0.57 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 41 H 0.41 3.73 8.35 -92.71 -0.77 2.95 16 42 H 0.08 1.93 7.95 -2.39 -0.02 1.91 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.06 2.37 6.91 -2.39 -0.02 2.36 16 45 H 0.05 1.41 7.83 -2.39 -0.02 1.40 16 46 H 0.07 2.15 7.88 -2.38 -0.02 2.13 16 47 H 0.11 3.29 7.28 -2.39 -0.02 3.27 16 48 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 49 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.06 1.26 7.36 -2.39 -0.02 1.24 16 51 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 52 H 0.05 1.19 8.12 -2.39 -0.02 1.17 16 Total: -1.00 -74.03 417.05 0.48 -73.55 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.60 Total: 36.30 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 6.77 Total: 9.02 kcal Atomic # 7 Polarization: -105.94 SS G_CDS: -7.63 Total: -113.57 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.09 Total: -50.45 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Total: -74.03 0.48 -73.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489284909.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.784 kcal (2) G-P(sol) polarization free energy of solvation -74.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds