Wall clock time and date at job start Tue Mar 31 2020 20:24:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 H 1.08995 * 109.47277 * 54.99418 * 3 2 1 5 5 C 1.53002 * 109.47106 * 294.99526 * 3 2 1 6 6 C 1.50703 * 109.46838 * 175.00076 * 3 2 1 7 7 O 1.21273 * 120.00294 * 359.97438 * 6 3 2 8 8 N 1.34782 * 119.99596 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99509 * 180.02562 * 8 6 3 10 10 C 1.53131 * 109.38847 * 118.84520 * 9 8 6 11 11 C 1.53716 * 108.89111 * 66.03574 * 10 9 8 12 12 H 1.08994 * 112.61721 * 188.04161 * 11 10 9 13 13 C 1.54607 * 107.80569 * 312.37612 * 11 10 9 14 14 C 1.54288 * 104.84222 * 88.55709 * 13 11 10 15 15 C 1.54614 * 104.84152 * 359.97438 * 14 13 11 16 16 H 1.09002 * 112.72299 * 147.13814 * 15 14 13 17 17 C 1.53141 * 109.42646 * 239.08261 * 9 8 6 18 18 N 1.48716 * 107.23802 * 64.08640 * 11 10 9 19 19 C 1.46898 * 110.99693 * 168.35226 * 18 11 10 20 20 C 1.50693 * 109.46928 * 300.85417 * 19 18 11 21 21 O 1.21294 * 120.00416 * 354.27200 * 20 19 18 22 22 N 1.34780 * 120.00378 * 174.26937 * 20 19 18 23 23 C 1.37099 * 120.00688 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99793 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00255 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99551 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99853 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47025 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.46914 * 120.00456 * 27 25 23 30 30 H 1.48506 * 109.46845 * 240.00321 * 27 25 23 31 31 H 1.08993 * 109.47193 * 300.00560 * 1 2 3 32 32 H 1.09008 * 109.46754 * 60.00293 * 1 2 3 33 33 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46765 * 240.00007 * 2 1 3 35 35 H 1.09000 * 109.46665 * 119.99368 * 2 1 3 36 36 H 1.09004 * 109.47176 * 300.00307 * 5 3 2 37 37 H 1.09002 * 109.46866 * 60.00373 * 5 3 2 38 38 H 1.08999 * 109.47160 * 180.02562 * 5 3 2 39 39 H 0.96991 * 120.00213 * 359.97438 * 8 6 3 40 40 H 1.09005 * 109.43267 * 358.97341 * 9 8 6 41 41 H 1.09005 * 109.56927 * 185.85624 * 10 9 8 42 42 H 1.08996 * 109.57115 * 306.21286 * 10 9 8 43 43 H 1.08997 * 110.36569 * 207.39660 * 13 11 10 44 44 H 1.09003 * 110.36907 * 329.60307 * 13 11 10 45 45 H 1.08998 * 110.36681 * 241.16666 * 14 13 11 46 46 H 1.08996 * 110.36699 * 118.84411 * 14 13 11 47 47 H 1.08998 * 109.56772 * 53.80374 * 17 9 8 48 48 H 1.08993 * 109.57369 * 174.16666 * 17 9 8 49 49 H 1.08999 * 109.47571 * 60.85823 * 19 18 11 50 50 H 1.09001 * 109.47022 * 180.85941 * 19 18 11 51 51 H 0.97003 * 119.99384 * 0.02562 * 22 20 19 52 52 H 0.97003 * 119.98872 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2149 2.6119 0.1458 9 6 5.6749 2.6136 0.2656 10 6 6.2859 3.2749 -0.9731 11 6 5.8921 4.7607 -0.9893 12 1 6.1765 5.2596 -1.9157 13 6 4.3723 4.8500 -0.7200 14 6 4.2467 4.9216 0.8161 15 6 5.7020 4.8683 1.3354 16 1 5.8447 5.4463 2.2484 17 6 6.0821 3.3911 1.5206 18 7 6.5127 5.3941 0.2045 19 6 6.4245 6.8585 0.1291 20 6 7.1259 7.3406 -1.1145 21 8 7.7364 6.5559 -1.8093 22 7 7.0749 8.6437 -1.4549 23 6 7.7126 9.0822 -2.5865 24 1 8.2562 8.3835 -3.2051 25 6 7.6595 10.4256 -2.9376 26 7 6.9984 11.2758 -2.1846 27 14 8.5290 11.0231 -4.4792 28 1 9.1968 9.8769 -5.1465 29 1 7.5365 11.6249 -5.4055 30 1 9.5443 12.0424 -4.1112 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8901 36 1 2.0700 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 1.9990 3.1540 -1.3076 39 1 3.7325 3.4509 0.0816 40 1 6.0337 1.5872 0.3428 41 1 7.3716 3.1854 -0.9368 42 1 5.9075 2.7872 -1.8714 43 1 3.9584 5.7490 -1.1767 44 1 3.8664 3.9636 -1.1028 45 1 3.6795 4.0694 1.1904 46 1 3.7709 5.8556 1.1147 47 1 5.5594 2.9856 2.3868 48 1 7.1586 3.3069 1.6691 49 1 5.3771 7.1582 0.0948 50 1 6.8992 7.2968 1.0069 51 1 6.5869 9.2713 -0.8991 52 1 6.9617 12.2136 -2.4296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490963838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:25 Heat of formation + Delta-G solvation = -4.213463 kcal Electronic energy + Delta-G solvation = -31262.786492 eV Core-core repulsion = 27264.671664 eV Total energy + Delta-G solvation = -3998.114828 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10768 -39.47211 -38.01817 -35.69786 -34.92639 -33.89248 -32.18222 -31.39697 -31.18563 -30.87184 -29.73616 -26.83478 -25.57773 -24.40248 -24.17104 -22.81395 -21.43387 -20.62459 -20.43225 -19.43760 -19.06750 -17.90675 -17.41069 -16.19804 -15.81459 -15.72040 -15.66563 -14.62319 -14.59812 -14.54250 -14.31069 -14.21637 -13.92605 -13.73286 -13.52169 -13.26207 -12.99649 -12.87448 -12.70412 -12.59101 -12.38332 -12.18199 -12.00003 -11.96458 -11.87107 -11.57086 -11.39725 -11.27424 -11.15158 -11.05772 -11.01862 -10.95502 -10.57118 -10.38139 -10.35952 -10.26279 -10.03049 -9.67424 -9.50313 -8.76181 -8.41160 -8.15288 -7.98275 -6.45669 -3.86347 2.60294 3.13391 3.22848 3.24486 3.31490 3.86409 3.94114 4.18296 4.43723 4.51463 4.55134 4.59486 4.63952 4.80011 4.98532 5.02189 5.03951 5.08141 5.09760 5.18619 5.21907 5.25182 5.27316 5.29137 5.37811 5.49278 5.53614 5.58246 5.64430 5.67881 5.72748 5.75396 5.79129 5.84376 5.91726 5.97130 5.98332 6.06960 6.08004 6.08748 6.15738 6.24414 6.35289 6.49658 6.62837 7.11248 7.28346 7.48295 7.51893 8.02766 8.21120 8.57348 9.14310 9.50393 10.01617 10.72041 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.002550 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.808248 B =10977.323194 C =11434.039021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.104 4.104 3 C -0.114 4.114 4 H 0.093 0.907 5 C -0.149 4.149 6 C 0.502 3.498 7 O -0.549 6.549 8 N -0.744 5.744 9 C 0.136 3.864 10 C -0.112 4.112 11 C 0.069 3.931 12 H 0.123 0.877 13 C -0.190 4.190 14 C -0.184 4.184 15 C 0.062 3.938 16 H 0.095 0.905 17 C -0.114 4.114 18 N -0.475 5.475 19 C 0.033 3.967 20 C 0.442 3.558 21 O -0.578 6.578 22 N -0.563 5.563 23 C -0.298 4.298 24 H 0.104 0.896 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.426 0.574 40 H 0.097 0.903 41 H 0.086 0.914 42 H 0.065 0.935 43 H 0.071 0.929 44 H 0.095 0.905 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.085 0.915 49 H 0.049 0.951 50 H 0.089 0.911 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 -14.936 7.913 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.142 4.142 3 C -0.135 4.135 4 H 0.111 0.889 5 C -0.207 4.207 6 C 0.288 3.712 7 O -0.427 6.427 8 N -0.417 5.417 9 C 0.032 3.968 10 C -0.151 4.151 11 C -0.040 4.040 12 H 0.141 0.859 13 C -0.230 4.230 14 C -0.224 4.224 15 C -0.047 4.047 16 H 0.113 0.887 17 C -0.152 4.152 18 N -0.197 5.197 19 C -0.098 4.098 20 C 0.228 3.772 21 O -0.462 6.462 22 N -0.199 5.199 23 C -0.428 4.428 24 H 0.122 0.878 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.286 0.714 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.084 0.916 43 H 0.090 0.910 44 H 0.112 0.888 45 H 0.111 0.889 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.104 0.896 49 H 0.067 0.933 50 H 0.107 0.893 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.769 -16.043 7.521 21.271 hybrid contribution -1.029 1.644 -0.408 1.982 sum -12.798 -14.399 7.113 20.536 Atomic orbital electron populations 1.21857 0.95592 1.01851 1.01861 1.21320 0.95192 0.94214 1.03473 1.21369 0.92384 0.99392 1.00339 0.88866 1.21880 1.02452 1.00251 0.96089 1.20912 0.90087 0.84493 0.75700 1.90651 1.70242 1.32074 1.49772 1.49038 1.08818 1.10242 1.73630 1.21058 0.79643 1.00945 0.95148 1.21994 1.02083 0.94329 0.96678 1.23251 0.88824 0.95101 0.96806 0.85898 1.23744 1.00936 1.03030 0.95259 1.23611 1.00076 1.02758 0.95928 1.23092 0.89596 0.96243 0.95758 0.88721 1.22009 1.02649 0.93641 0.96924 1.65205 1.47983 1.04499 1.02037 1.21984 0.99308 0.89356 0.99199 1.19723 0.86318 0.83377 0.87818 1.90499 1.46735 1.54332 1.54665 1.41895 1.47089 1.06742 1.24217 1.19744 1.28747 0.93077 1.01192 0.87846 1.25266 0.97594 0.95766 0.99338 1.69624 1.41950 1.04009 1.38677 0.85810 0.78880 0.78815 0.80917 1.19202 1.20779 1.20724 0.92757 0.92410 0.92510 0.91319 0.91196 0.91818 0.91052 0.92283 0.71419 0.88460 0.89522 0.91645 0.91046 0.88764 0.88871 0.91042 0.91523 0.89595 0.93341 0.89274 0.77524 0.91919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 9.67 37.16 0.36 -0.63 16 2 C -0.10 -0.90 4.75 -26.73 -0.13 -1.03 16 3 C -0.11 -0.97 2.73 -91.77 -0.25 -1.22 16 4 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 5 C -0.15 -1.11 8.84 37.16 0.33 -0.78 16 6 C 0.50 5.91 7.15 -10.98 -0.08 5.83 16 7 O -0.55 -8.49 15.25 5.56 0.08 -8.40 16 8 N -0.74 -8.08 2.65 -53.67 -0.14 -8.22 16 9 C 0.14 1.67 3.15 -67.79 -0.21 1.46 16 10 C -0.11 -1.56 5.49 -26.29 -0.14 -1.70 16 11 C 0.07 1.05 3.11 -65.49 -0.20 0.85 16 12 H 0.12 2.38 5.67 -51.93 -0.29 2.08 16 13 C -0.19 -2.29 5.10 -25.21 -0.13 -2.41 16 14 C -0.18 -1.90 5.06 -25.21 -0.13 -2.03 16 15 C 0.06 0.74 3.68 -65.50 -0.24 0.50 16 16 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 17 C -0.11 -1.28 5.49 -26.32 -0.14 -1.43 16 18 N -0.48 -7.39 4.85 -214.39 -1.04 -8.43 16 19 C 0.03 0.57 5.37 -4.98 -0.03 0.54 16 20 C 0.44 10.01 7.24 -10.99 -0.08 9.93 16 21 O -0.58 -14.91 13.82 5.55 0.08 -14.84 16 22 N -0.56 -13.84 5.29 -10.96 -0.06 -13.90 16 23 C -0.30 -8.11 9.68 -14.93 -0.14 -8.26 16 24 H 0.10 2.97 7.16 -52.49 -0.38 2.59 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.11 13.05 55.50 0.72 -23.38 16 27 Si 0.93 20.75 29.55 -169.99 -5.02 15.73 16 28 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 30 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.34 6.57 -51.92 -0.34 0.00 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.68 7.95 -51.93 -0.41 0.27 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.42 6.56 -51.93 -0.34 0.08 16 38 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 39 H 0.43 4.12 1.47 -68.07 -0.10 4.02 16 40 H 0.10 1.32 6.90 -51.93 -0.36 0.96 16 41 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 44 H 0.09 1.02 4.04 -51.93 -0.21 0.81 16 45 H 0.09 0.84 5.25 -51.93 -0.27 0.57 16 46 H 0.07 0.70 8.00 -51.93 -0.42 0.28 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 49 H 0.05 0.75 6.88 -51.93 -0.36 0.39 16 50 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 51 H 0.39 9.25 7.90 -40.82 -0.32 8.93 16 52 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -31.30 384.51 -9.24 -40.54 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: -8.34 Total: 15.02 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: -1.32 Total: 0.09 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.52 Total: -53.93 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.16 Total: -23.24 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -31.30 -9.24 -40.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490963838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.324 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds