Wall clock time and date at job start Tue Mar 31 2020 20:24:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46869 * 2 1 4 4 H 1.08995 * 109.47277 * 54.99418 * 3 2 1 5 5 C 1.53002 * 109.47106 * 294.99526 * 3 2 1 6 6 C 1.50703 * 109.46838 * 175.00076 * 3 2 1 7 7 O 1.21273 * 120.00294 * 359.97438 * 6 3 2 8 8 N 1.34782 * 119.99596 * 180.02562 * 6 3 2 9 9 C 1.46499 * 119.99509 * 180.02562 * 8 6 3 10 10 C 1.53131 * 109.38847 * 118.84520 * 9 8 6 11 11 C 1.53716 * 108.89111 * 66.03574 * 10 9 8 12 12 H 1.08994 * 112.61721 * 188.04161 * 11 10 9 13 13 C 1.54607 * 107.80569 * 312.37612 * 11 10 9 14 14 C 1.54288 * 104.84222 * 88.55709 * 13 11 10 15 15 C 1.54614 * 104.84152 * 359.97438 * 14 13 11 16 16 H 1.09002 * 112.72299 * 147.13814 * 15 14 13 17 17 C 1.53141 * 109.42646 * 239.08261 * 9 8 6 18 18 N 1.48716 * 107.23802 * 64.08640 * 11 10 9 19 19 C 1.46898 * 110.99693 * 168.35226 * 18 11 10 20 20 C 1.50693 * 109.46928 * 300.85417 * 19 18 11 21 21 O 1.21294 * 120.00416 * 354.27200 * 20 19 18 22 22 N 1.34780 * 120.00378 * 174.26937 * 20 19 18 23 23 C 1.37099 * 120.00688 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99793 * 359.97438 * 23 22 20 25 25 C 1.38950 * 120.00255 * 179.97438 * 23 22 20 26 26 N 1.31414 * 119.99551 * 0.02562 * 25 23 22 27 27 Si 1.86800 * 119.99853 * 179.97438 * 25 23 22 28 28 H 1.48494 * 109.47025 * 0.02562 * 27 25 23 29 29 H 1.48495 * 109.46914 * 120.00456 * 27 25 23 30 30 H 1.48506 * 109.46845 * 240.00321 * 27 25 23 31 31 H 1.08993 * 109.47193 * 300.00560 * 1 2 3 32 32 H 1.09008 * 109.46754 * 60.00293 * 1 2 3 33 33 H 1.09003 * 109.47054 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.46765 * 240.00007 * 2 1 3 35 35 H 1.09000 * 109.46665 * 119.99368 * 2 1 3 36 36 H 1.09004 * 109.47176 * 300.00307 * 5 3 2 37 37 H 1.09002 * 109.46866 * 60.00373 * 5 3 2 38 38 H 1.08999 * 109.47160 * 180.02562 * 5 3 2 39 39 H 0.96991 * 120.00213 * 359.97438 * 8 6 3 40 40 H 1.09005 * 109.43267 * 358.97341 * 9 8 6 41 41 H 1.09005 * 109.56927 * 185.85624 * 10 9 8 42 42 H 1.08996 * 109.57115 * 306.21286 * 10 9 8 43 43 H 1.08997 * 110.36569 * 207.39660 * 13 11 10 44 44 H 1.09003 * 110.36907 * 329.60307 * 13 11 10 45 45 H 1.08998 * 110.36681 * 241.16666 * 14 13 11 46 46 H 1.08996 * 110.36699 * 118.84411 * 14 13 11 47 47 H 1.08998 * 109.56772 * 53.80374 * 17 9 8 48 48 H 1.08993 * 109.57369 * 174.16666 * 17 9 8 49 49 H 1.08999 * 109.47571 * 60.85823 * 19 18 11 50 50 H 1.09001 * 109.47022 * 180.85941 * 19 18 11 51 51 H 0.97003 * 119.99384 * 0.02562 * 22 20 19 52 52 H 0.97003 * 119.98872 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8417 5 6 1.6353 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1450 0.3953 0.2046 8 7 4.2149 2.6119 0.1458 9 6 5.6749 2.6136 0.2656 10 6 6.2859 3.2749 -0.9731 11 6 5.8921 4.7607 -0.9893 12 1 6.1765 5.2596 -1.9157 13 6 4.3723 4.8500 -0.7200 14 6 4.2467 4.9216 0.8161 15 6 5.7020 4.8683 1.3354 16 1 5.8447 5.4463 2.2484 17 6 6.0821 3.3911 1.5206 18 7 6.5127 5.3941 0.2045 19 6 6.4245 6.8585 0.1291 20 6 7.1259 7.3406 -1.1145 21 8 7.7364 6.5559 -1.8093 22 7 7.0749 8.6437 -1.4549 23 6 7.7126 9.0822 -2.5865 24 1 8.2562 8.3835 -3.2051 25 6 7.6595 10.4256 -2.9376 26 7 6.9984 11.2758 -2.1846 27 14 8.5290 11.0231 -4.4792 28 1 9.1968 9.8769 -5.1465 29 1 7.5365 11.6249 -5.4055 30 1 9.5443 12.0424 -4.1112 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5137 0.8901 36 1 2.0700 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 1.9990 3.1540 -1.3076 39 1 3.7325 3.4509 0.0816 40 1 6.0337 1.5872 0.3428 41 1 7.3716 3.1854 -0.9368 42 1 5.9075 2.7872 -1.8714 43 1 3.9584 5.7490 -1.1767 44 1 3.8664 3.9636 -1.1028 45 1 3.6795 4.0694 1.1904 46 1 3.7709 5.8556 1.1147 47 1 5.5594 2.9856 2.3868 48 1 7.1586 3.3069 1.6691 49 1 5.3771 7.1582 0.0948 50 1 6.8992 7.2968 1.0069 51 1 6.5869 9.2713 -0.8991 52 1 6.9617 12.2136 -2.4296 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490963838.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:24 Heat of formation + Delta-G solvation = -25.009663 kcal Electronic energy + Delta-G solvation = -31263.688283 eV Core-core repulsion = 27264.671664 eV Total energy + Delta-G solvation = -3999.016618 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.14429 -40.57178 -39.70403 -36.48352 -36.20970 -35.68841 -33.33903 -33.09115 -32.29745 -32.05584 -30.41197 -28.30216 -26.47740 -25.92569 -25.18666 -23.83783 -22.37103 -21.68066 -21.36874 -20.95152 -20.22409 -19.81346 -18.36126 -17.66405 -17.15859 -16.77172 -16.50817 -16.41357 -15.99697 -15.73856 -15.40529 -15.32366 -15.07989 -14.84955 -14.65845 -14.25243 -14.17078 -14.00925 -13.73564 -13.55329 -13.49383 -13.42913 -13.27370 -12.98447 -12.90332 -12.65640 -12.57226 -12.41981 -12.39550 -12.23587 -12.13445 -12.09313 -11.74758 -11.69603 -11.57844 -11.44893 -11.35378 -11.10345 -10.62276 -10.19724 -9.98538 -9.73135 -9.39661 -8.46898 -5.94691 1.35430 1.41082 1.54629 1.68369 2.06261 2.28027 2.33089 2.80036 3.20617 3.28930 3.57178 3.64760 3.72531 3.81219 3.89683 3.97952 4.04293 4.10060 4.20018 4.24712 4.30221 4.35856 4.40719 4.45997 4.51963 4.57742 4.61143 4.64029 4.71139 4.73367 4.78093 4.86241 4.94635 4.95467 5.01104 5.05474 5.08582 5.12636 5.16497 5.23154 5.24497 5.27637 5.37696 5.41453 5.50656 5.62924 5.92386 5.96136 6.16430 6.57337 6.61239 7.13810 7.29817 7.57528 8.13423 8.70711 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020601 B = 0.002550 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.808248 B =10977.323194 C =11434.039021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.104 4.104 3 C -0.108 4.108 4 H 0.120 0.880 5 C -0.149 4.149 6 C 0.497 3.503 7 O -0.591 6.591 8 N -0.734 5.734 9 C 0.143 3.857 10 C -0.107 4.107 11 C 0.064 3.936 12 H 0.076 0.924 13 C -0.184 4.184 14 C -0.176 4.176 15 C 0.063 3.937 16 H 0.116 0.884 17 C -0.108 4.108 18 N -0.495 5.495 19 C 0.047 3.953 20 C 0.441 3.559 21 O -0.614 6.614 22 N -0.574 5.574 23 C -0.329 4.329 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.990 3.010 28 H -0.275 1.275 29 H -0.271 1.271 30 H -0.272 1.272 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.055 0.945 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.433 0.567 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.107 0.893 45 H 0.114 0.886 46 H 0.089 0.911 47 H 0.088 0.912 48 H 0.079 0.921 49 H 0.071 0.929 50 H 0.109 0.891 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.501 -14.396 9.448 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.142 4.142 3 C -0.129 4.129 4 H 0.138 0.862 5 C -0.206 4.206 6 C 0.286 3.714 7 O -0.471 6.471 8 N -0.407 5.407 9 C 0.038 3.962 10 C -0.146 4.146 11 C -0.045 4.045 12 H 0.094 0.906 13 C -0.223 4.223 14 C -0.215 4.215 15 C -0.046 4.046 16 H 0.134 0.866 17 C -0.147 4.147 18 N -0.218 5.218 19 C -0.084 4.084 20 C 0.228 3.772 21 O -0.501 6.501 22 N -0.211 5.211 23 C -0.458 4.458 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.814 3.186 28 H -0.200 1.200 29 H -0.196 1.196 30 H -0.197 1.197 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.069 0.931 35 H 0.073 0.927 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.294 0.706 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.085 0.915 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.108 0.892 47 H 0.106 0.894 48 H 0.097 0.903 49 H 0.089 0.911 50 H 0.127 0.873 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.138 -15.480 9.075 22.844 hybrid contribution -0.251 1.385 -0.906 1.673 sum -14.388 -14.096 8.170 21.736 Atomic orbital electron populations 1.21826 0.93543 1.02409 1.02864 1.21299 0.96894 0.94058 1.01932 1.21420 0.89700 0.99782 1.01982 0.86209 1.21908 1.03809 1.00078 0.94817 1.21568 0.91524 0.83810 0.74516 1.90640 1.71369 1.33506 1.51617 1.48971 1.08057 1.10477 1.73174 1.20865 0.80480 1.00045 0.94764 1.21901 1.01032 0.93926 0.97694 1.23025 0.91385 0.95009 0.95061 0.90614 1.23677 0.98165 1.03437 0.97049 1.23574 0.99295 1.04675 0.93931 1.23244 0.89919 0.96311 0.95094 0.86607 1.21985 1.02595 0.93289 0.96817 1.65196 1.49837 1.03473 1.03312 1.21856 0.99765 0.90491 0.96337 1.20771 0.85189 0.82342 0.88852 1.90484 1.48108 1.55138 1.56323 1.41945 1.47594 1.07623 1.23958 1.19645 1.30216 0.93415 1.02555 0.90509 1.25987 0.97938 0.95379 1.01941 1.69675 1.42306 1.04378 1.39727 0.84918 0.78101 0.78014 0.77602 1.19984 1.19580 1.19695 0.91570 0.91484 0.92311 0.93083 0.92667 0.93149 0.88922 0.91720 0.70559 0.89864 0.91514 0.92091 0.91522 0.87567 0.86826 0.89236 0.89366 0.90277 0.91121 0.87347 0.77058 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.67 71.98 0.70 -0.85 16 2 C -0.10 -1.66 4.75 30.60 0.15 -1.51 16 3 C -0.11 -1.59 2.73 -11.54 -0.03 -1.62 16 4 H 0.12 1.18 8.14 -2.39 -0.02 1.16 16 5 C -0.15 -1.84 8.84 71.98 0.64 -1.20 16 6 C 0.50 11.04 7.15 87.66 0.63 11.67 16 7 O -0.59 -18.21 15.25 -3.01 -0.05 -18.25 16 8 N -0.73 -14.57 2.65 -442.09 -1.17 -15.74 16 9 C 0.14 3.42 3.15 45.08 0.14 3.56 16 10 C -0.11 -3.07 5.49 30.88 0.17 -2.90 16 11 C 0.06 1.99 3.11 45.35 0.14 2.13 16 12 H 0.08 3.11 5.67 -2.39 -0.01 3.09 16 13 C -0.18 -4.10 5.10 31.58 0.16 -3.94 16 14 C -0.18 -2.98 5.06 31.58 0.16 -2.82 16 15 C 0.06 1.30 3.68 45.32 0.17 1.47 16 16 H 0.12 2.01 8.11 -2.39 -0.02 1.99 16 17 C -0.11 -2.22 5.49 30.86 0.17 -2.05 16 18 N -0.50 -14.98 4.85 -832.19 -4.04 -19.02 16 19 C 0.05 1.54 5.37 85.56 0.46 2.00 16 20 C 0.44 20.40 7.24 87.65 0.63 21.04 16 21 O -0.61 -33.20 13.82 -3.07 -0.04 -33.24 16 22 N -0.57 -28.81 5.29 -306.98 -1.62 -30.43 16 23 C -0.33 -18.43 9.68 84.04 0.81 -17.62 16 24 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 26 N -0.92 -48.95 13.05 21.66 0.28 -48.67 16 27 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 28 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 31 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.58 6.57 -2.38 -0.02 0.56 16 33 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.04 7.95 -2.39 -0.02 1.02 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.09 0.78 6.56 -2.39 -0.02 0.76 16 38 H 0.06 0.73 6.43 -2.39 -0.02 0.71 16 39 H 0.43 7.13 1.47 -118.31 -0.17 6.96 16 40 H 0.08 2.28 6.90 -2.38 -0.02 2.26 16 41 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.07 1.58 8.11 -2.39 -0.02 1.56 16 44 H 0.11 2.09 4.04 -2.39 -0.01 2.08 16 45 H 0.11 1.53 5.25 -2.39 -0.01 1.51 16 46 H 0.09 1.30 8.00 -2.39 -0.02 1.28 16 47 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.07 2.02 6.88 -2.39 -0.02 2.00 16 50 H 0.11 3.18 8.14 -2.39 -0.02 3.16 16 51 H 0.40 18.84 7.90 -92.71 -0.73 18.11 16 52 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -71.10 384.51 0.99 -70.11 By element: Atomic # 1 Polarization: 43.30 SS G_CDS: 0.04 Total: 43.33 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 5.56 Total: 7.15 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -6.55 Total: -113.85 kcal Atomic # 8 Polarization: -51.41 SS G_CDS: -0.09 Total: -51.50 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -71.10 0.99 -70.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490963838.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.102 kcal (2) G-P(sol) polarization free energy of solvation -71.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds