Wall clock time and date at job start Tue Mar 31 2020 20:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46938 * 2 1 4 4 C 1.53005 * 109.46955 * 240.00298 * 2 1 3 5 5 C 1.52994 * 109.47159 * 120.00507 * 2 1 3 6 6 H 1.09006 * 115.56205 * 274.30790 * 5 2 1 7 7 C 1.53002 * 117.50172 * 128.62082 * 5 2 1 8 8 C 1.53004 * 60.00063 * 252.50678 * 7 5 2 9 9 H 1.08996 * 117.50002 * 107.50768 * 8 7 5 10 10 C 1.50697 * 117.50013 * 252.51281 * 8 7 5 11 11 O 1.21281 * 120.00755 * 68.60411 * 10 8 7 12 12 N 1.34777 * 119.99526 * 248.60755 * 10 8 7 13 13 C 1.46502 * 119.99843 * 179.97438 * 12 10 8 14 14 H 1.09000 * 112.90816 * 23.74366 * 13 12 10 15 15 C 1.53784 * 113.61491 * 154.99806 * 13 12 10 16 16 C 1.53787 * 87.07923 * 139.97939 * 15 13 12 17 17 H 1.09004 * 113.60869 * 89.20131 * 16 15 13 18 18 N 1.46898 * 113.61127 * 220.01561 * 16 15 13 19 19 C 1.46904 * 110.99913 * 205.00021 * 18 16 15 20 20 C 1.50698 * 109.47048 * 180.02562 * 19 18 16 21 21 O 1.21290 * 120.00289 * 359.97438 * 20 19 18 22 22 N 1.34777 * 119.99841 * 180.02562 * 20 19 18 23 23 C 1.37091 * 120.00054 * 179.97438 * 22 20 19 24 24 H 1.08006 * 120.00464 * 359.97438 * 23 22 20 25 25 C 1.38956 * 120.00316 * 179.97438 * 23 22 20 26 26 N 1.31410 * 120.00021 * 180.02562 * 25 23 22 27 27 Si 1.86800 * 119.99555 * 0.02562 * 25 23 22 28 28 H 1.48500 * 109.47194 * 89.99735 * 27 25 23 29 29 H 1.48505 * 109.46934 * 209.99880 * 27 25 23 30 30 H 1.48500 * 109.47381 * 329.99577 * 27 25 23 31 31 C 1.53778 * 87.08035 * 334.56830 * 16 15 13 32 32 H 1.09000 * 109.47155 * 299.99918 * 1 2 3 33 33 H 1.09000 * 109.47087 * 59.99356 * 1 2 3 34 34 H 1.08994 * 109.47384 * 179.97438 * 1 2 3 35 35 H 1.09003 * 109.46779 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47585 * 299.99715 * 3 2 1 37 37 H 1.08993 * 109.47046 * 60.00728 * 3 2 1 38 38 H 1.09004 * 109.46772 * 300.00189 * 4 2 1 39 39 H 1.08997 * 109.47055 * 59.99729 * 4 2 1 40 40 H 1.08991 * 109.47422 * 180.02562 * 4 2 1 41 41 H 1.08997 * 117.50037 * 145.02055 * 7 5 2 42 42 H 1.08996 * 117.51332 * 359.97438 * 7 5 2 43 43 H 0.97002 * 120.00010 * 359.97438 * 12 10 8 44 44 H 1.09004 * 113.61451 * 25.43425 * 15 13 12 45 45 H 1.08994 * 113.61477 * 254.52726 * 15 13 12 46 46 H 1.00905 * 110.99674 * 81.05427 * 18 16 15 47 47 H 1.08999 * 109.47304 * 300.00671 * 19 18 16 48 48 H 1.09001 * 109.46976 * 60.00232 * 19 18 16 49 49 H 0.96995 * 120.00054 * 359.97438 * 22 20 19 50 50 H 0.96998 * 119.99760 * 180.02562 * 26 25 23 51 51 H 1.08999 * 113.61111 * 139.98327 * 31 16 15 52 52 H 1.09004 * 113.61682 * 270.87724 * 31 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2491 6 1 2.1272 -0.1062 2.1448 7 6 3.0741 -1.8314 1.0512 8 6 1.6357 -2.1853 1.4342 9 1 1.0065 -2.6349 0.6661 10 6 1.3884 -2.6664 2.8407 11 8 1.5123 -1.9017 3.7739 12 7 1.0295 -3.9466 3.0617 13 6 0.7896 -4.4145 4.4291 14 1 0.5264 -3.6080 5.1134 15 6 -0.1568 -5.6240 4.5092 16 6 0.7710 -6.1779 5.6034 17 1 0.5017 -5.8546 6.6089 18 7 0.9912 -7.6273 5.5099 19 6 1.3485 -8.1909 6.8186 20 6 1.5667 -9.6759 6.6833 21 8 1.4369 -10.2120 5.6032 22 7 1.9051 -10.4084 7.7629 23 6 2.1031 -11.7593 7.6400 24 1 1.9876 -12.2368 6.6781 25 6 2.4526 -12.5145 8.7528 26 7 2.6429 -13.8094 8.6348 27 14 2.6518 -11.6888 10.4166 28 1 1.3499 -11.6940 11.1308 29 1 3.6594 -12.4283 11.2186 30 1 3.1047 -10.2879 10.2230 31 6 1.8929 -5.3419 4.9653 32 1 -0.3633 0.5138 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 -0.3634 -1.0276 -0.0005 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 1.6767 1.9562 0.8900 38 1 1.6766 -1.7489 -1.2493 39 1 1.6766 -0.2074 -2.1392 40 1 3.1299 -0.7217 -1.2492 41 1 3.8416 -1.9467 1.8166 42 1 3.3910 -2.0484 0.0311 43 1 0.9301 -4.5582 2.3153 44 1 -0.1712 -6.2281 3.6019 45 1 -1.1551 -5.3742 4.8684 46 1 1.6948 -7.8423 4.8194 47 1 2.2634 -7.7209 7.1792 48 1 0.5411 -8.0050 7.5270 49 1 2.0086 -9.9797 8.6268 50 1 2.8865 -14.3365 9.4118 51 1 2.5493 -4.8644 5.6927 52 1 2.4390 -5.8688 4.1827 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491033989.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:02:11 Heat of formation + Delta-G solvation = -61.052513 kcal Electronic energy + Delta-G solvation = -28287.401405 eV Core-core repulsion = 24286.821851 eV Total energy + Delta-G solvation = -4000.579554 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.47955 -40.51960 -39.94656 -38.81539 -36.16035 -35.46154 -34.78502 -33.79293 -33.45456 -28.68468 -28.25314 -28.12127 -26.64226 -26.45963 -25.39338 -23.81953 -23.13957 -21.52268 -21.27502 -20.76968 -20.12778 -19.31199 -18.31300 -17.88230 -17.27302 -17.03940 -16.58319 -16.46429 -16.19451 -15.85400 -15.66895 -15.35008 -14.99837 -14.82064 -14.68516 -14.48956 -14.46102 -14.07396 -13.79016 -13.57439 -13.46515 -13.41205 -13.19845 -13.15186 -12.86549 -12.60267 -12.48075 -12.41492 -12.18269 -12.09852 -12.01049 -11.95500 -11.90409 -11.78144 -11.51391 -11.48749 -11.19839 -10.94118 -10.76927 -10.42443 -10.24866 -10.04630 -9.24923 -8.41506 -6.02361 1.30400 1.35754 1.44442 1.45974 1.95562 2.13134 2.22911 2.76256 2.85521 3.15003 3.36729 3.53916 3.65359 3.69606 3.75454 3.85946 3.91061 3.97912 4.01185 4.14995 4.17576 4.26072 4.30719 4.45766 4.50308 4.60482 4.62111 4.76378 4.78295 4.80013 4.81923 4.83031 4.94657 4.97029 5.01606 5.08137 5.08885 5.11109 5.12724 5.20026 5.22618 5.39724 5.49440 5.52099 5.54278 5.58043 5.92201 6.10170 6.38501 6.55968 6.59843 6.87923 7.23809 7.39747 7.96135 8.76100 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032208 B = 0.001517 C = 0.001505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.134826 B =18450.169806 C =18603.899445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 C -0.139 4.139 4 C -0.146 4.146 5 C -0.109 4.109 6 H 0.091 0.909 7 C -0.143 4.143 8 C -0.189 4.189 9 H 0.145 0.855 10 C 0.538 3.462 11 O -0.587 6.587 12 N -0.704 5.704 13 C 0.126 3.874 14 H 0.103 0.897 15 C -0.123 4.123 16 C 0.070 3.930 17 H 0.114 0.886 18 N -0.670 5.670 19 C 0.060 3.940 20 C 0.448 3.552 21 O -0.615 6.615 22 N -0.591 5.591 23 C -0.330 4.330 24 H 0.055 0.945 25 C -0.014 4.014 26 N -0.934 5.934 27 Si 0.964 3.036 28 H -0.257 1.257 29 H -0.275 1.275 30 H -0.232 1.232 31 C -0.175 4.175 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.066 0.934 37 H 0.048 0.952 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.415 0.585 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.347 0.653 47 H 0.075 0.925 48 H 0.115 0.885 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.068 0.932 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 32.342 -14.764 35.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.037 4.037 3 C -0.197 4.197 4 C -0.203 4.203 5 C -0.128 4.128 6 H 0.109 0.891 7 C -0.180 4.180 8 C -0.210 4.210 9 H 0.163 0.837 10 C 0.327 3.673 11 O -0.468 6.468 12 N -0.354 5.354 13 C 0.020 3.980 14 H 0.121 0.879 15 C -0.162 4.162 16 C -0.041 4.041 17 H 0.132 0.868 18 N -0.301 5.301 19 C -0.072 4.072 20 C 0.236 3.764 21 O -0.499 6.499 22 N -0.233 5.233 23 C -0.459 4.459 24 H 0.074 0.926 25 C -0.213 4.213 26 N -0.575 5.575 27 Si 0.784 3.216 28 H -0.182 1.182 29 H -0.201 1.201 30 H -0.155 1.155 31 C -0.215 4.215 32 H 0.063 0.937 33 H 0.084 0.916 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.150 0.850 43 H 0.252 0.748 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.166 0.834 47 H 0.093 0.907 48 H 0.133 0.867 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.087 0.913 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -2.866 32.134 -14.678 35.444 hybrid contribution 1.058 -0.475 0.951 1.500 sum -1.807 31.659 -13.727 34.555 Atomic orbital electron populations 1.21860 0.94204 1.02014 1.01689 1.20104 0.95527 0.95380 0.92711 1.21843 1.01256 0.94642 1.01933 1.22031 1.01530 1.00484 0.96263 1.22403 1.01761 0.88969 0.99669 0.89083 1.23279 0.89626 1.01012 1.04073 1.22318 1.02580 1.01611 0.94495 0.83708 1.20234 0.74885 0.81745 0.90465 1.90669 1.53640 1.56162 1.46339 1.45864 1.69026 1.11072 1.09419 1.22253 0.96660 0.95115 0.83941 0.87859 1.23399 0.98495 0.94398 0.99907 1.22945 0.96313 0.84945 0.99890 0.86803 1.60041 1.51959 1.11375 1.06718 1.21701 1.02486 0.89225 0.93789 1.21021 0.81036 0.90436 0.83927 1.90539 1.56258 1.74378 1.28738 1.42040 1.63790 1.07235 1.10207 1.19021 1.46526 0.83167 0.97227 0.92639 1.26104 0.96021 0.95879 1.03247 1.69803 1.47483 1.07289 1.32877 0.85371 0.79487 0.79859 0.76838 1.18155 1.20058 1.15492 1.24169 0.97840 0.98588 1.00944 0.93692 0.91589 0.92447 0.92338 0.91517 0.93323 0.91930 0.91804 0.91665 0.89637 0.84980 0.74823 0.88900 0.89778 0.83360 0.90678 0.86665 0.77472 0.91149 0.91304 0.89470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 8.31 71.98 0.60 -0.83 16 2 C -0.04 -0.37 0.88 -52.18 -0.05 -0.41 16 3 C -0.14 -1.34 8.46 71.98 0.61 -0.73 16 4 C -0.15 -0.99 7.07 71.98 0.51 -0.48 16 5 C -0.11 -1.50 4.66 -10.79 -0.05 -1.55 16 6 H 0.09 1.75 7.64 -2.38 -0.02 1.73 16 7 C -0.14 -1.67 9.27 30.60 0.28 -1.39 16 8 C -0.19 -2.50 5.04 -11.54 -0.06 -2.56 16 9 H 0.15 1.23 7.07 -2.39 -0.02 1.22 16 10 C 0.54 10.60 7.61 87.66 0.67 11.27 16 11 O -0.59 -16.65 15.86 -3.03 -0.05 -16.70 16 12 N -0.70 -11.07 5.35 -440.03 -2.36 -13.43 16 13 C 0.13 2.20 4.24 45.52 0.19 2.40 16 14 H 0.10 2.10 7.47 -2.39 -0.02 2.09 16 15 C -0.12 -2.08 7.63 31.12 0.24 -1.84 16 16 C 0.07 1.36 4.18 45.44 0.19 1.55 16 17 H 0.11 1.93 7.87 -2.39 -0.02 1.92 16 18 N -0.67 -18.49 6.24 -492.84 -3.08 -21.57 16 19 C 0.06 1.78 6.01 85.56 0.51 2.30 16 20 C 0.45 19.98 7.82 87.66 0.69 20.67 16 21 O -0.61 -33.76 15.78 -3.06 -0.05 -33.81 16 22 N -0.59 -27.72 5.09 -306.98 -1.56 -29.29 16 23 C -0.33 -19.34 10.16 84.04 0.85 -18.49 16 24 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 25 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 26 N -0.93 -56.27 13.96 21.66 0.30 -55.97 16 27 Si 0.96 38.68 27.74 68.60 1.90 40.59 16 28 H -0.26 -9.79 7.11 99.48 0.71 -9.09 16 29 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 30 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 31 C -0.17 -3.20 7.49 31.12 0.23 -2.97 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 34 H 0.06 0.55 7.29 -2.39 -0.02 0.54 16 35 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 37 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.37 7.07 -2.39 -0.02 0.35 16 39 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 40 H 0.06 0.40 6.97 -2.39 -0.02 0.39 16 41 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.13 0.97 5.85 -2.39 -0.01 0.95 16 43 H 0.41 4.48 8.73 -92.71 -0.81 3.67 16 44 H 0.09 1.60 8.12 -2.39 -0.02 1.58 16 45 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.35 10.27 7.89 -89.69 -0.71 9.56 16 47 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.12 2.85 8.13 -2.39 -0.02 2.83 16 49 H 0.39 15.09 5.76 -92.71 -0.53 14.55 16 50 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 51 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.09 1.63 7.82 -2.38 -0.02 1.62 16 Total: -1.00 -79.91 415.89 -0.17 -80.08 By element: Atomic # 1 Polarization: 44.63 SS G_CDS: -1.17 Total: 43.47 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: 5.89 Total: 6.63 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -6.69 Total: -120.26 kcal Atomic # 8 Polarization: -50.41 SS G_CDS: -0.10 Total: -50.50 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 1.90 Total: 40.59 kcal Total: -79.91 -0.17 -80.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491033989.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.027 kcal (2) G-P(sol) polarization free energy of solvation -79.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds