Wall clock time and date at job start Tue Mar 31 2020 19:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 H 1.09002 * 115.54973 * 29.41636 * 3 2 1 5 5 C 1.53005 * 117.49874 * 243.74600 * 3 2 1 6 6 C 1.52999 * 59.99973 * 252.48565 * 5 3 2 7 7 H 1.08995 * 117.49529 * 107.48826 * 6 5 3 8 8 C 1.50693 * 117.50064 * 252.51042 * 6 5 3 9 9 O 1.21290 * 120.00028 * 68.62195 * 8 6 5 10 10 N 1.34778 * 120.00264 * 248.62816 * 8 6 5 11 11 C 1.46504 * 120.00338 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46959 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.50383 * 55.00109 * 12 11 10 14 14 C 1.53125 * 109.50329 * 294.91702 * 12 11 10 15 15 C 1.53128 * 109.15593 * 182.44492 * 14 12 11 16 16 C 1.53037 * 109.30647 * 57.60125 * 15 14 12 17 17 N 1.46847 * 109.52280 * 300.83493 * 16 15 14 18 18 C 1.46895 * 110.99869 * 185.84327 * 17 16 15 19 19 C 1.50703 * 109.47292 * 65.79455 * 18 17 16 20 20 O 1.21290 * 119.99517 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99924 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00252 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00033 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00171 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00307 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46992 * 60.00322 * 26 24 22 28 28 H 1.48492 * 109.47458 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47124 * 300.00608 * 26 24 22 30 30 C 1.46852 * 111.19862 * 61.74735 * 17 16 15 31 31 H 1.09001 * 109.47451 * 300.00208 * 1 2 3 32 32 H 1.09000 * 109.47146 * 59.99856 * 1 2 3 33 33 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47451 * 239.99792 * 2 1 3 35 35 H 1.09000 * 109.47146 * 120.00144 * 2 1 3 36 36 H 1.09004 * 117.49602 * 359.97438 * 5 3 2 37 37 H 1.09004 * 117.49357 * 144.97247 * 5 3 2 38 38 H 0.97005 * 119.99370 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.47050 * 300.00082 * 11 10 8 40 40 H 1.08999 * 109.46969 * 59.99850 * 11 10 8 41 41 H 1.08998 * 109.52647 * 302.31484 * 14 12 11 42 42 H 1.09003 * 109.51927 * 62.50441 * 14 12 11 43 43 H 1.08998 * 109.46763 * 297.65455 * 15 14 12 44 44 H 1.09006 * 109.53104 * 177.57699 * 15 14 12 45 45 H 1.08999 * 109.45832 * 180.82546 * 16 15 14 46 46 H 1.08997 * 109.46003 * 60.84999 * 16 15 14 47 47 H 1.09003 * 109.47424 * 185.79236 * 18 17 16 48 48 H 1.09003 * 109.47466 * 305.79129 * 18 17 16 49 49 H 0.97001 * 119.99895 * 359.97438 * 21 19 18 50 50 H 0.97001 * 120.00777 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.46257 * 178.23985 * 30 17 16 52 52 H 1.08996 * 109.45082 * 58.26490 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 0.4830 5 6 2.8415 1.9084 -1.2172 6 6 3.5503 1.6583 0.1155 7 1 4.1808 0.7725 0.1916 8 6 4.0241 2.8621 0.8883 9 8 3.2177 3.6163 1.3903 10 7 5.3439 3.1007 1.0216 11 6 5.8045 4.2713 1.7724 12 6 7.3340 4.3079 1.7722 13 1 7.6985 4.2795 0.7454 14 6 7.8744 3.0983 2.5402 15 6 9.4030 3.1752 2.5874 16 6 9.8234 4.4934 3.2413 17 7 9.2826 5.6189 2.4685 18 6 9.7802 6.9003 2.9863 19 6 11.2681 6.9882 2.7642 20 8 11.8563 6.0730 2.2279 21 7 11.9455 8.0832 3.1626 22 6 13.2992 8.1628 2.9611 23 1 13.8230 7.3480 2.4835 24 6 13.9974 9.2919 3.3713 25 7 13.3603 10.2832 3.9529 26 14 15.8421 9.4002 3.0974 27 1 16.1330 9.3069 1.6441 28 1 16.3451 10.6954 3.6212 29 1 16.5146 8.2840 3.8095 30 6 7.8144 5.5933 2.4496 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.0058 1.1871 -2.0177 37 1 2.7175 2.9437 -1.5351 38 1 5.9887 2.4973 0.6203 39 1 5.4190 5.1774 1.3052 40 1 5.4430 4.2099 2.7989 41 1 7.4783 3.1049 3.5556 42 1 7.5706 2.1811 2.0356 43 1 9.8006 3.1286 1.5736 44 1 9.7921 2.3398 3.1697 45 1 10.9113 4.5573 3.2629 46 1 9.4369 4.5331 4.2596 47 1 9.2860 7.7197 2.4642 48 1 9.5673 6.9685 4.0531 49 1 11.4751 8.8149 3.5919 50 1 13.8476 11.0717 4.2389 51 1 7.4432 6.4560 1.8964 52 1 7.4377 5.6278 3.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491118011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:51 Heat of formation + Delta-G solvation = -65.687379 kcal Electronic energy + Delta-G solvation = -28612.389661 eV Core-core repulsion = 24611.609125 eV Total energy + Delta-G solvation = -4000.780537 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38666 -39.33260 -37.93297 -37.30813 -35.31855 -33.91698 -32.93379 -32.45965 -31.33667 -31.14172 -27.57398 -26.63421 -24.73305 -24.40475 -23.80384 -22.81260 -21.65179 -20.95266 -20.38416 -19.60550 -19.13733 -17.86078 -17.54289 -16.42802 -15.91325 -15.64988 -15.51825 -15.11834 -14.88161 -14.85716 -14.61212 -14.45927 -14.14184 -14.04465 -13.69417 -13.39752 -13.37682 -12.97036 -12.88706 -12.66748 -12.53769 -12.42614 -12.13980 -11.85710 -11.74178 -11.49687 -11.45855 -11.40709 -11.05874 -11.01453 -10.70909 -10.66532 -10.46879 -10.44686 -10.35590 -10.29518 -10.20433 -10.02971 -9.44869 -9.29499 -8.41973 -7.96851 -7.82768 -6.40866 -3.81760 2.23297 2.83248 3.20257 3.26068 3.30217 3.43387 3.91013 3.96868 4.19412 4.23833 4.34225 4.39265 4.61114 4.68172 4.75188 4.78681 4.81538 4.90291 5.00264 5.06089 5.23464 5.24680 5.25853 5.33641 5.35872 5.42182 5.48116 5.50795 5.55632 5.56811 5.62964 5.65962 5.71915 5.72478 5.76646 5.87586 5.94533 5.95520 6.00578 6.07589 6.10886 6.22500 6.29387 6.46398 6.55349 7.24166 7.31911 7.44432 7.55604 7.98194 8.07068 8.62808 9.18806 9.55474 10.07369 10.76793 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.001573 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.145748 B =17800.369131 C =18048.155719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.193 4.193 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.543 6.543 10 N -0.722 5.722 11 C 0.125 3.875 12 C -0.095 4.095 13 H 0.088 0.912 14 C -0.114 4.114 15 C -0.113 4.113 16 C 0.051 3.949 17 N -0.514 5.514 18 C 0.046 3.954 19 C 0.444 3.556 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.023 3.977 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.064 3.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.402 0.598 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.104 0.896 46 H 0.020 0.980 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.076 0.924 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.649 -17.781 -5.952 28.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.141 0.859 8 C 0.328 3.672 9 O -0.420 6.420 10 N -0.374 5.374 11 C 0.001 3.999 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.077 4.077 17 N -0.238 5.238 18 C -0.085 4.085 19 C 0.229 3.771 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.065 4.065 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.237 0.763 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.122 0.878 46 H 0.038 0.962 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.094 0.906 52 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.567 -17.688 -6.336 28.604 hybrid contribution 0.802 0.518 0.875 1.295 sum -20.765 -17.171 -5.460 27.493 Atomic orbital electron populations 1.21740 0.95112 1.01693 1.02207 1.21159 0.96358 0.93572 1.02170 1.22489 0.91298 0.98776 1.01073 0.86415 1.23113 1.01908 1.03259 0.90283 1.22308 0.97834 0.98959 1.02283 0.85917 1.19663 0.82209 0.85569 0.79799 1.90704 1.54045 1.48734 1.48528 1.45934 1.06946 1.28776 1.55702 1.21387 0.93912 0.88087 0.96503 1.21398 0.92542 0.95841 1.01597 0.89402 1.21667 0.96632 0.96922 0.99987 1.21538 0.94444 0.96870 1.02191 1.22275 1.02921 0.89584 0.92905 1.61456 1.05701 1.02043 1.54597 1.21834 0.96104 0.92162 0.98380 1.19735 0.87909 0.84560 0.84857 1.90477 1.69745 1.38827 1.47141 1.41863 1.08503 1.16707 1.52998 1.19645 0.82790 1.03567 1.36919 0.87978 1.25248 1.00551 0.95229 0.96844 1.69602 1.37010 1.07288 1.40437 0.85927 0.82159 0.77344 0.78832 1.19900 1.20996 1.19950 1.21988 0.88622 0.97104 0.98822 0.92467 0.92486 0.92582 0.91622 0.91402 0.87741 0.88239 0.76331 0.91251 0.91446 0.92236 0.92269 0.90882 0.91829 0.87821 0.96156 0.89353 0.93523 0.77497 0.91837 0.90592 0.94951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.87 37.15 0.37 -0.39 16 2 C -0.10 -0.51 6.22 -26.73 -0.17 -0.68 16 3 C -0.12 -0.85 5.25 -90.62 -0.48 -1.32 16 4 H 0.12 1.07 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.94 9.88 -26.73 -0.26 -1.21 16 6 C -0.19 -1.41 5.91 -91.77 -0.54 -1.95 16 7 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 8 C 0.54 5.61 7.61 -10.99 -0.08 5.53 16 9 O -0.54 -7.80 16.26 5.55 0.09 -7.71 16 10 N -0.72 -6.28 5.31 -60.29 -0.32 -6.60 16 11 C 0.13 1.23 5.07 -4.04 -0.02 1.21 16 12 C -0.09 -0.98 2.39 -90.54 -0.22 -1.19 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.11 -1.15 5.13 -26.60 -0.14 -1.28 16 15 C -0.11 -1.42 6.09 -26.65 -0.16 -1.58 16 16 C 0.05 0.81 5.11 -3.83 -0.02 0.79 16 17 N -0.51 -8.35 4.40 -236.12 -1.04 -9.39 16 18 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 19 C 0.44 10.37 7.46 -10.98 -0.08 10.29 16 20 O -0.58 -15.29 13.90 5.55 0.08 -15.21 16 21 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.31 9.68 -14.94 -0.14 -8.45 16 23 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 25 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 26 Si 0.93 20.99 29.55 -169.99 -5.02 15.97 16 27 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 30 C 0.06 0.79 4.74 -3.83 -0.02 0.78 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.10 0.48 8.03 -51.93 -0.42 0.06 16 37 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.40 2.60 7.68 -40.82 -0.31 2.29 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.06 0.48 7.26 -51.93 -0.38 0.11 16 43 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.10 2.04 5.78 -51.93 -0.30 1.74 16 46 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 1.43 7.99 -51.93 -0.41 1.01 16 48 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.08 0.90 8.01 -51.93 -0.42 0.48 16 52 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 416.12 15.07 6.27 6.27 Total: -1.00 -32.56 416.12 -10.58 -43.14 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -9.22 Total: 9.74 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.09 Total: 1.85 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.69 Total: -54.05 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: 0.17 Total: -22.92 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.56 -10.58 -43.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491118011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.547 kcal (2) G-P(sol) polarization free energy of solvation -32.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds