Wall clock time and date at job start Tue Mar 31 2020 19:58:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53003 * 109.47383 * 2 1 4 4 H 1.09002 * 115.54973 * 29.41636 * 3 2 1 5 5 C 1.53005 * 117.49874 * 243.74600 * 3 2 1 6 6 C 1.52999 * 59.99973 * 252.48565 * 5 3 2 7 7 H 1.08995 * 117.49529 * 107.48826 * 6 5 3 8 8 C 1.50693 * 117.50064 * 252.51042 * 6 5 3 9 9 O 1.21290 * 120.00028 * 68.62195 * 8 6 5 10 10 N 1.34778 * 120.00264 * 248.62816 * 8 6 5 11 11 C 1.46504 * 120.00338 * 179.97438 * 10 8 6 12 12 C 1.52998 * 109.46959 * 179.97438 * 11 10 8 13 13 H 1.08994 * 109.50383 * 55.00109 * 12 11 10 14 14 C 1.53125 * 109.50329 * 294.91702 * 12 11 10 15 15 C 1.53128 * 109.15593 * 182.44492 * 14 12 11 16 16 C 1.53037 * 109.30647 * 57.60125 * 15 14 12 17 17 N 1.46847 * 109.52280 * 300.83493 * 16 15 14 18 18 C 1.46895 * 110.99869 * 185.84327 * 17 16 15 19 19 C 1.50703 * 109.47292 * 65.79455 * 18 17 16 20 20 O 1.21290 * 119.99517 * 359.97438 * 19 18 17 21 21 N 1.34778 * 120.00137 * 180.02562 * 19 18 17 22 22 C 1.37096 * 119.99924 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00252 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00033 * 179.97438 * 22 21 19 25 25 N 1.31410 * 120.00171 * 0.02562 * 24 22 21 26 26 Si 1.86801 * 120.00307 * 179.97438 * 24 22 21 27 27 H 1.48504 * 109.46992 * 60.00322 * 26 24 22 28 28 H 1.48492 * 109.47458 * 180.02562 * 26 24 22 29 29 H 1.48502 * 109.47124 * 300.00608 * 26 24 22 30 30 C 1.46852 * 111.19862 * 61.74735 * 17 16 15 31 31 H 1.09001 * 109.47451 * 300.00208 * 1 2 3 32 32 H 1.09000 * 109.47146 * 59.99856 * 1 2 3 33 33 H 1.09004 * 109.47539 * 180.02562 * 1 2 3 34 34 H 1.09001 * 109.47451 * 239.99792 * 2 1 3 35 35 H 1.09000 * 109.47146 * 120.00144 * 2 1 3 36 36 H 1.09004 * 117.49602 * 359.97438 * 5 3 2 37 37 H 1.09004 * 117.49357 * 144.97247 * 5 3 2 38 38 H 0.97005 * 119.99370 * 359.97438 * 10 8 6 39 39 H 1.08995 * 109.47050 * 300.00082 * 11 10 8 40 40 H 1.08999 * 109.46969 * 59.99850 * 11 10 8 41 41 H 1.08998 * 109.52647 * 302.31484 * 14 12 11 42 42 H 1.09003 * 109.51927 * 62.50441 * 14 12 11 43 43 H 1.08998 * 109.46763 * 297.65455 * 15 14 12 44 44 H 1.09006 * 109.53104 * 177.57699 * 15 14 12 45 45 H 1.08999 * 109.45832 * 180.82546 * 16 15 14 46 46 H 1.08997 * 109.46003 * 60.84999 * 16 15 14 47 47 H 1.09003 * 109.47424 * 185.79236 * 18 17 16 48 48 H 1.09003 * 109.47466 * 305.79129 * 18 17 16 49 49 H 0.97001 * 119.99895 * 359.97438 * 21 19 18 50 50 H 0.97001 * 120.00777 * 180.02562 * 25 24 22 51 51 H 1.08996 * 109.46257 * 178.23985 * 30 17 16 52 52 H 1.08996 * 109.45082 * 58.26490 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3891 2.1713 0.4830 5 6 2.8415 1.9084 -1.2172 6 6 3.5503 1.6583 0.1155 7 1 4.1808 0.7725 0.1916 8 6 4.0241 2.8621 0.8883 9 8 3.2177 3.6163 1.3903 10 7 5.3439 3.1007 1.0216 11 6 5.8045 4.2713 1.7724 12 6 7.3340 4.3079 1.7722 13 1 7.6985 4.2795 0.7454 14 6 7.8744 3.0983 2.5402 15 6 9.4030 3.1752 2.5874 16 6 9.8234 4.4934 3.2413 17 7 9.2826 5.6189 2.4685 18 6 9.7802 6.9003 2.9863 19 6 11.2681 6.9882 2.7642 20 8 11.8563 6.0730 2.2279 21 7 11.9455 8.0832 3.1626 22 6 13.2992 8.1628 2.9611 23 1 13.8230 7.3480 2.4835 24 6 13.9974 9.2919 3.3713 25 7 13.3603 10.2832 3.9529 26 14 15.8421 9.4002 3.0974 27 1 16.1330 9.3069 1.6441 28 1 16.3451 10.6954 3.6212 29 1 16.5146 8.2840 3.8095 30 6 7.8144 5.5933 2.4496 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8932 -0.5139 0.8900 36 1 3.0058 1.1871 -2.0177 37 1 2.7175 2.9437 -1.5351 38 1 5.9887 2.4973 0.6203 39 1 5.4190 5.1774 1.3052 40 1 5.4430 4.2099 2.7989 41 1 7.4783 3.1049 3.5556 42 1 7.5706 2.1811 2.0356 43 1 9.8006 3.1286 1.5736 44 1 9.7921 2.3398 3.1697 45 1 10.9113 4.5573 3.2629 46 1 9.4369 4.5331 4.2596 47 1 9.2860 7.7197 2.4642 48 1 9.5673 6.9685 4.0531 49 1 11.4751 8.8149 3.5919 50 1 13.8476 11.0717 4.2389 51 1 7.4432 6.4560 1.8964 52 1 7.4377 5.6278 3.4718 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491118011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:50 Heat of formation + Delta-G solvation = -87.862207 kcal Electronic energy + Delta-G solvation = -28613.351234 eV Core-core repulsion = 24611.609125 eV Total energy + Delta-G solvation = -4001.742109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19592 -40.63121 -39.39611 -38.05604 -36.41480 -35.80665 -34.05871 -33.23335 -32.94373 -32.21587 -29.05567 -27.53024 -26.49949 -25.03349 -24.47035 -23.94003 -22.70219 -21.52352 -21.13612 -20.92294 -20.53938 -19.84661 -18.28684 -17.78307 -17.08159 -16.73209 -16.51897 -16.41598 -16.27475 -15.75926 -15.68436 -15.52989 -15.21186 -15.13956 -14.90367 -14.82831 -14.50992 -13.94540 -13.67841 -13.51774 -13.48277 -13.44667 -13.23581 -13.04866 -12.97374 -12.87964 -12.64252 -12.42568 -12.17704 -12.12792 -12.05196 -11.91478 -11.62839 -11.59138 -11.34143 -11.26697 -11.23935 -11.03966 -10.76990 -10.22867 -10.09512 -9.98675 -9.18497 -8.45399 -5.94155 1.40068 1.41759 1.48381 1.52673 2.06616 2.09521 2.29653 2.78087 2.87978 3.21362 3.39342 3.63357 3.74894 3.78686 3.81235 3.87751 3.91347 4.19848 4.20338 4.29717 4.29831 4.38294 4.42215 4.49151 4.49673 4.50614 4.55519 4.57941 4.64513 4.71639 4.79704 4.80106 4.92817 4.95968 5.01102 5.04761 5.08677 5.16855 5.18776 5.23576 5.29953 5.30997 5.40376 5.41990 5.50316 5.52359 5.91263 6.10883 6.26189 6.55021 6.61910 7.13978 7.24102 7.57721 8.13540 8.71791 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.037975 B = 0.001573 C = 0.001551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 737.145748 B =17800.369131 C =18048.155719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.125 4.125 4 H 0.091 0.909 5 C -0.138 4.138 6 C -0.193 4.193 7 H 0.151 0.849 8 C 0.536 3.464 9 O -0.590 6.590 10 N -0.711 5.711 11 C 0.134 3.866 12 C -0.082 4.082 13 H 0.086 0.914 14 C -0.107 4.107 15 C -0.106 4.106 16 C 0.050 3.950 17 N -0.530 5.530 18 C 0.057 3.943 19 C 0.442 3.558 20 O -0.612 6.612 21 N -0.575 5.575 22 C -0.333 4.333 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.271 1.271 29 H -0.272 1.272 30 C 0.061 3.939 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.066 0.934 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.130 0.870 37 H 0.086 0.914 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.086 0.914 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.059 0.941 46 H 0.028 0.972 47 H 0.109 0.891 48 H 0.063 0.937 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.083 0.917 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.383 -19.292 -6.601 30.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.127 4.127 3 C -0.144 4.144 4 H 0.109 0.891 5 C -0.175 4.175 6 C -0.214 4.214 7 H 0.168 0.832 8 C 0.324 3.676 9 O -0.471 6.471 10 N -0.362 5.362 11 C 0.009 3.991 12 C -0.101 4.101 13 H 0.104 0.896 14 C -0.144 4.144 15 C -0.144 4.144 16 C -0.077 4.077 17 N -0.254 5.254 18 C -0.074 4.074 19 C 0.229 3.771 20 O -0.498 6.498 21 N -0.212 5.212 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.197 1.197 30 C -0.067 4.067 31 H 0.065 0.935 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.105 0.895 38 H 0.253 0.747 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.078 0.922 44 H 0.095 0.905 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.127 0.873 48 H 0.081 0.919 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.102 0.898 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -22.303 -19.214 -6.991 30.257 hybrid contribution 0.995 0.981 1.077 1.764 sum -21.309 -18.233 -5.914 28.661 Atomic orbital electron populations 1.21752 0.95200 1.02200 1.01730 1.21152 0.96272 0.92292 1.03011 1.22473 0.90970 0.99384 1.01601 0.89068 1.23191 1.00679 1.03245 0.90426 1.22375 0.98165 0.98454 1.02369 0.83158 1.20227 0.82135 0.85917 0.79333 1.90686 1.55249 1.50551 1.50606 1.45839 1.06891 1.28457 1.55036 1.21193 0.93226 0.88341 0.96292 1.21256 0.92662 0.94974 1.01243 0.89611 1.21627 0.94356 0.97864 1.00565 1.21485 0.96441 0.95307 1.01198 1.22193 1.00288 0.91349 0.93901 1.61436 1.08068 1.01197 1.54738 1.21714 0.91889 0.94015 0.99806 1.20739 0.90190 0.83171 0.82978 1.90455 1.71292 1.39816 1.48234 1.41935 1.08008 1.17515 1.53781 1.19629 0.84272 1.03811 1.38561 0.90252 1.26021 1.04686 0.94452 0.96048 1.69668 1.38548 1.07564 1.40464 0.84999 0.76922 0.77775 0.78702 1.19714 1.19561 1.19700 1.22096 0.86018 0.98738 0.99808 0.93481 0.92513 0.91533 0.89980 0.91241 0.85176 0.89522 0.74712 0.92054 0.91993 0.91828 0.89575 0.92168 0.90516 0.92255 0.95413 0.87330 0.91879 0.77122 0.91356 0.89838 0.94062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.87 71.98 0.71 -0.65 16 2 C -0.09 -0.79 6.22 30.59 0.19 -0.60 16 3 C -0.13 -1.66 5.25 -10.79 -0.06 -1.71 16 4 H 0.09 1.71 7.60 -2.39 -0.02 1.69 16 5 C -0.14 -1.49 9.88 30.60 0.30 -1.18 16 6 C -0.19 -2.41 5.91 -11.54 -0.07 -2.48 16 7 H 0.15 1.03 8.14 -2.39 -0.02 1.01 16 8 C 0.54 10.44 7.61 87.65 0.67 11.11 16 9 O -0.59 -16.98 16.26 -3.06 -0.05 -17.03 16 10 N -0.71 -10.84 5.31 -463.06 -2.46 -13.30 16 11 C 0.13 2.40 5.07 86.38 0.44 2.84 16 12 C -0.08 -1.52 2.39 -10.74 -0.03 -1.55 16 13 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 14 C -0.11 -1.85 5.13 30.68 0.16 -1.69 16 15 C -0.11 -2.54 6.09 30.65 0.19 -2.35 16 16 C 0.05 1.60 5.11 86.33 0.44 2.04 16 17 N -0.53 -16.85 4.40 -900.93 -3.96 -20.81 16 18 C 0.06 2.00 5.45 85.56 0.47 2.47 16 19 C 0.44 21.14 7.46 87.66 0.65 21.79 16 20 O -0.61 -33.58 13.90 -3.06 -0.04 -33.62 16 21 N -0.57 -29.72 5.29 -306.99 -1.62 -31.35 16 22 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 25 N -0.92 -50.04 13.05 21.66 0.28 -49.75 16 26 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 27 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 28 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 29 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 30 C 0.06 1.43 4.74 86.33 0.41 1.84 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 34 H 0.08 0.47 7.88 -2.39 -0.02 0.45 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 0.74 8.03 -2.39 -0.02 0.72 16 37 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.42 4.08 7.68 -92.70 -0.71 3.37 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.08 7.26 -2.39 -0.02 1.06 16 43 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 45 H 0.06 2.42 5.78 -2.39 -0.01 2.41 16 46 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.11 3.37 7.99 -2.39 -0.02 3.36 16 48 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 49 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 50 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 51 H 0.08 1.82 8.01 -2.39 -0.02 1.80 16 52 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -73.05 416.12 -0.60 -73.66 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: -0.53 Total: 35.66 kcal Atomic # 6 Polarization: 5.73 SS G_CDS: 5.75 Total: 11.48 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -7.76 Total: -115.21 kcal Atomic # 8 Polarization: -50.57 SS G_CDS: -0.09 Total: -50.66 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -73.05 -0.60 -73.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491118011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.207 kcal (2) G-P(sol) polarization free energy of solvation -73.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds