Wall clock time and date at job start Tue Mar 31 2020 19:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 H 1.08998 * 115.55952 * 29.31804 * 3 2 1 5 5 C 1.52993 * 117.49895 * 243.62500 * 3 2 1 6 6 C 1.53003 * 117.49538 * 175.00026 * 3 2 1 7 7 H 1.08999 * 117.51848 * 0.02562 * 6 3 2 8 8 C 1.50698 * 117.49576 * 214.97898 * 6 3 2 9 9 O 1.21283 * 120.00472 * 359.97438 * 8 6 3 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 6 3 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08996 * 109.50378 * 305.00052 * 12 11 10 14 14 C 1.53120 * 109.50155 * 65.07952 * 12 11 10 15 15 C 1.53129 * 109.15637 * 177.55959 * 14 12 11 16 16 C 1.53032 * 109.30852 * 302.39971 * 15 14 12 17 17 N 1.46853 * 109.52225 * 59.15900 * 16 15 14 18 18 C 1.46901 * 110.99897 * 174.15692 * 17 16 15 19 19 C 1.50700 * 109.47255 * 294.21298 * 18 17 16 20 20 O 1.21294 * 120.00086 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99854 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99913 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99786 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00045 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99681 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00258 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46716 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47263 * 119.99731 * 26 24 22 29 29 H 1.48498 * 109.47433 * 240.00088 * 26 24 22 30 30 C 1.46843 * 111.20222 * 298.25770 * 17 16 15 31 31 H 1.08994 * 109.46662 * 299.99538 * 1 2 3 32 32 H 1.09003 * 109.47239 * 59.99749 * 1 2 3 33 33 H 1.09001 * 109.46698 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46869 * 240.00271 * 2 1 3 35 35 H 1.08990 * 109.47043 * 120.00588 * 2 1 3 36 36 H 1.08996 * 117.49985 * 145.02410 * 5 3 2 37 37 H 1.09002 * 117.52096 * 359.97438 * 5 3 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 39 39 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 40 40 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 41 41 H 1.09004 * 109.52360 * 297.50151 * 14 12 11 42 42 H 1.08999 * 109.52464 * 57.69106 * 14 12 11 43 43 H 1.08997 * 109.50210 * 182.44414 * 15 14 12 44 44 H 1.08992 * 109.50350 * 62.36429 * 15 14 12 45 45 H 1.08994 * 109.46856 * 299.14717 * 16 15 14 46 46 H 1.08998 * 109.45272 * 179.16880 * 16 15 14 47 47 H 1.08994 * 109.47277 * 54.21516 * 18 17 16 48 48 H 1.09008 * 109.46949 * 174.21533 * 18 17 16 49 49 H 0.97002 * 119.99751 * 0.02562 * 21 19 18 50 50 H 0.97005 * 119.99384 * 180.02562 * 25 24 22 51 51 H 1.08993 * 109.46202 * 301.72800 * 30 17 16 52 52 H 1.08996 * 109.46645 * 181.75471 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 0.4815 5 6 2.8439 1.9076 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1807 0.7721 0.1957 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6170 1.3911 10 7 5.3425 3.0998 1.0276 11 6 5.8019 4.2736 1.7741 12 6 7.3315 4.3128 1.7720 13 1 7.7201 3.3716 2.1606 14 6 7.8355 4.5224 0.3414 15 6 9.3635 4.6213 0.3564 16 6 9.7873 5.7670 1.2783 17 7 9.2816 5.5184 2.6344 18 6 9.7853 6.5263 3.5770 19 6 11.2793 6.3838 3.7139 20 8 11.8667 5.5267 3.0881 21 7 11.9627 7.2082 4.5324 22 6 13.3218 7.0783 4.6573 23 1 13.8448 6.3156 4.0995 24 6 14.0263 7.9285 5.5008 25 7 13.3898 8.8568 6.1791 26 14 15.8782 7.7520 5.6705 27 1 16.3504 6.6392 4.8080 28 1 16.5362 9.0160 5.2530 29 1 16.2200 7.4599 7.0858 30 6 7.8142 5.4674 2.6529 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.7212 2.9428 -1.5343 37 1 3.0101 1.1861 -2.0158 38 1 5.9880 2.4962 0.6277 39 1 5.4147 5.1777 1.3040 40 1 5.4414 4.2152 2.8010 41 1 7.5306 3.6798 -0.2793 42 1 7.4153 5.4438 -0.0616 43 1 9.7256 4.8139 -0.6534 44 1 9.7852 3.6851 0.7219 45 1 9.3773 6.7050 0.9041 46 1 10.8752 5.8301 1.3022 47 1 9.5480 7.5228 3.2047 48 1 9.3158 6.3805 4.5499 49 1 11.4927 7.8929 5.0337 50 1 13.8818 9.4505 6.7677 51 1 7.4134 6.4068 2.2722 52 1 7.4690 5.3132 3.6752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491118014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:54 Heat of formation + Delta-G solvation = -65.802189 kcal Electronic energy + Delta-G solvation = -28617.146885 eV Core-core repulsion = 24616.361370 eV Total energy + Delta-G solvation = -4000.785515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.38910 -39.33382 -37.93493 -37.31056 -35.32000 -33.91873 -32.93443 -32.45832 -31.33743 -31.14256 -27.57652 -26.63305 -24.73546 -24.40476 -23.81045 -22.81130 -21.65113 -20.95875 -20.39139 -19.59397 -19.13988 -17.86271 -17.55520 -16.42130 -15.90940 -15.76557 -15.32993 -15.16085 -14.90306 -14.86848 -14.61972 -14.49624 -14.12669 -14.02873 -13.68726 -13.40138 -13.38469 -12.94713 -12.89634 -12.66901 -12.54234 -12.44031 -12.14118 -11.86109 -11.73888 -11.49997 -11.45947 -11.41271 -11.06700 -11.04528 -10.70835 -10.67077 -10.46654 -10.37699 -10.34092 -10.29040 -10.21636 -10.03126 -9.46900 -9.29559 -8.42155 -7.97036 -7.82930 -6.41362 -3.82055 2.23153 2.83223 3.16336 3.26933 3.33924 3.43047 3.90705 3.96726 4.19344 4.23772 4.33902 4.38568 4.62561 4.67160 4.75136 4.79371 4.80709 4.90646 5.00602 5.05891 5.22945 5.24236 5.25596 5.33617 5.35696 5.42117 5.47730 5.50838 5.55725 5.56648 5.62977 5.66164 5.71868 5.72520 5.76605 5.87538 5.94469 5.95653 6.00548 6.07471 6.10782 6.22451 6.29183 6.46305 6.55231 7.24130 7.31766 7.44330 7.55789 7.98133 8.07299 8.62481 9.18767 9.55321 10.07069 10.76479 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036138 B = 0.001576 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.623943 B =17766.478288 C =18031.628061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.117 4.117 4 H 0.118 0.882 5 C -0.149 4.149 6 C -0.193 4.193 7 H 0.123 0.877 8 C 0.541 3.459 9 O -0.543 6.543 10 N -0.722 5.722 11 C 0.125 3.875 12 C -0.095 4.095 13 H 0.088 0.912 14 C -0.114 4.114 15 C -0.113 4.113 16 C 0.051 3.949 17 N -0.514 5.514 18 C 0.046 3.954 19 C 0.444 3.556 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.104 0.896 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.929 3.071 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 C 0.064 3.936 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.067 0.933 40 H 0.070 0.930 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.020 0.980 46 H 0.104 0.896 47 H 0.047 0.953 48 H 0.088 0.912 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.032 0.968 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.776 -13.025 -13.459 28.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.186 4.186 6 C -0.214 4.214 7 H 0.141 0.859 8 C 0.328 3.672 9 O -0.420 6.420 10 N -0.374 5.374 11 C 0.001 3.999 12 C -0.114 4.114 13 H 0.106 0.894 14 C -0.152 4.152 15 C -0.150 4.150 16 C -0.077 4.077 17 N -0.238 5.238 18 C -0.085 4.085 19 C 0.230 3.770 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.543 5.543 26 Si 0.756 3.244 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 C -0.065 4.065 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.084 0.916 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.078 0.922 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.091 0.909 45 H 0.038 0.962 46 H 0.122 0.878 47 H 0.065 0.935 48 H 0.107 0.893 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.050 0.950 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.682 -13.351 -13.219 28.690 hybrid contribution 0.783 1.021 0.150 1.295 sum -20.900 -12.330 -13.069 27.561 Atomic orbital electron populations 1.21743 0.95113 1.01701 1.02193 1.21163 0.96359 0.93560 1.02195 1.22487 0.91296 0.98795 1.01011 0.86410 1.23107 1.01998 1.03201 0.90289 1.22316 0.97892 0.98984 1.02198 0.85879 1.19661 0.82210 0.85570 0.79795 1.90702 1.53991 1.48719 1.48593 1.45932 1.06949 1.28534 1.55942 1.21389 0.93926 0.87942 0.96637 1.21399 0.92632 1.00795 0.96556 0.89405 1.21666 0.96721 1.01364 0.95450 1.21535 0.94473 1.00203 0.98831 1.22274 1.03082 0.95273 0.87048 1.61455 1.06469 1.48468 1.07410 1.21836 0.95992 0.93482 0.97176 1.19739 0.87930 0.84966 0.84393 1.90480 1.70039 1.36754 1.48879 1.41880 1.08073 1.30817 1.39373 1.19747 0.82232 1.16483 1.24305 0.87865 1.25255 1.00591 0.95765 0.96340 1.69625 1.36700 1.19561 1.28436 0.85809 0.82265 0.78234 0.78088 1.19228 1.20803 1.20769 1.21985 0.88553 0.96316 0.99678 0.92448 0.92515 0.92573 0.91630 0.91357 0.88299 0.87758 0.76330 0.91481 0.91215 0.92243 0.92252 0.91834 0.90880 0.96160 0.87829 0.93519 0.89343 0.77504 0.91950 0.94958 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.87 37.16 0.37 -0.40 16 2 C -0.10 -0.52 6.22 -26.73 -0.17 -0.68 16 3 C -0.12 -0.84 5.25 -90.62 -0.48 -1.32 16 4 H 0.12 1.07 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.93 9.88 -26.73 -0.26 -1.19 16 6 C -0.19 -1.41 5.91 -91.77 -0.54 -1.95 16 7 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 8 C 0.54 5.61 7.61 -10.99 -0.08 5.53 16 9 O -0.54 -7.79 16.26 5.55 0.09 -7.70 16 10 N -0.72 -6.28 5.31 -60.29 -0.32 -6.60 16 11 C 0.12 1.23 5.07 -4.04 -0.02 1.21 16 12 C -0.09 -0.98 2.39 -90.54 -0.22 -1.19 16 13 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.11 -1.14 5.13 -26.60 -0.14 -1.28 16 15 C -0.11 -1.41 6.09 -26.65 -0.16 -1.58 16 16 C 0.05 0.81 5.11 -3.83 -0.02 0.79 16 17 N -0.51 -8.35 4.40 -236.12 -1.04 -9.38 16 18 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 19 C 0.44 10.38 7.46 -10.98 -0.08 10.29 16 20 O -0.58 -15.28 13.90 5.54 0.08 -15.20 16 21 N -0.56 -14.23 5.29 -10.96 -0.06 -14.29 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.51 13.05 55.50 0.72 -23.78 16 26 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 27 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 30 C 0.06 0.79 4.74 -3.83 -0.02 0.78 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.29 7.88 -51.93 -0.41 -0.12 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.10 0.46 8.03 -51.93 -0.42 0.05 16 38 H 0.40 2.60 7.67 -40.82 -0.31 2.29 16 39 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.49 7.26 -51.93 -0.38 0.11 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.10 2.03 5.78 -51.93 -0.30 1.73 16 47 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 48 H 0.09 1.43 7.99 -51.92 -0.41 1.01 16 49 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 50 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 51 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.08 0.90 8.02 -51.93 -0.42 0.49 16 LS Contribution 416.12 15.07 6.27 6.27 Total: -1.00 -32.62 416.12 -10.58 -43.20 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -9.22 Total: 9.64 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -2.09 Total: 1.88 kcal Atomic # 7 Polarization: -53.36 SS G_CDS: -0.69 Total: -54.05 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.17 Total: -22.90 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -32.62 -10.58 -43.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491118014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.603 kcal (2) G-P(sol) polarization free energy of solvation -32.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds