Wall clock time and date at job start Tue Mar 31 2020 19:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47012 * 2 1 4 4 H 1.08998 * 115.55952 * 29.31804 * 3 2 1 5 5 C 1.52993 * 117.49895 * 243.62500 * 3 2 1 6 6 C 1.53003 * 117.49538 * 175.00026 * 3 2 1 7 7 H 1.08999 * 117.51848 * 0.02562 * 6 3 2 8 8 C 1.50698 * 117.49576 * 214.97898 * 6 3 2 9 9 O 1.21283 * 120.00472 * 359.97438 * 8 6 3 10 10 N 1.34777 * 119.99538 * 179.97438 * 8 6 3 11 11 C 1.46499 * 119.99665 * 179.72653 * 10 8 6 12 12 C 1.53004 * 109.47198 * 180.27868 * 11 10 8 13 13 H 1.08996 * 109.50378 * 305.00052 * 12 11 10 14 14 C 1.53120 * 109.50155 * 65.07952 * 12 11 10 15 15 C 1.53129 * 109.15637 * 177.55959 * 14 12 11 16 16 C 1.53032 * 109.30852 * 302.39971 * 15 14 12 17 17 N 1.46853 * 109.52225 * 59.15900 * 16 15 14 18 18 C 1.46901 * 110.99897 * 174.15692 * 17 16 15 19 19 C 1.50700 * 109.47255 * 294.21298 * 18 17 16 20 20 O 1.21294 * 120.00086 * 359.97438 * 19 18 17 21 21 N 1.34779 * 119.99854 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99913 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99786 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00045 * 179.97438 * 22 21 19 25 25 N 1.31413 * 119.99681 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00258 * 180.02562 * 24 22 21 27 27 H 1.48503 * 109.46716 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47263 * 119.99731 * 26 24 22 29 29 H 1.48498 * 109.47433 * 240.00088 * 26 24 22 30 30 C 1.46843 * 111.20222 * 298.25770 * 17 16 15 31 31 H 1.08994 * 109.46662 * 299.99538 * 1 2 3 32 32 H 1.09003 * 109.47239 * 59.99749 * 1 2 3 33 33 H 1.09001 * 109.46698 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.46869 * 240.00271 * 2 1 3 35 35 H 1.08990 * 109.47043 * 120.00588 * 2 1 3 36 36 H 1.08996 * 117.49985 * 145.02410 * 5 3 2 37 37 H 1.09002 * 117.52096 * 359.97438 * 5 3 2 38 38 H 0.97001 * 120.00485 * 0.02562 * 10 8 6 39 39 H 1.09009 * 109.47454 * 300.27637 * 11 10 8 40 40 H 1.08998 * 109.47492 * 60.27932 * 11 10 8 41 41 H 1.09004 * 109.52360 * 297.50151 * 14 12 11 42 42 H 1.08999 * 109.52464 * 57.69106 * 14 12 11 43 43 H 1.08997 * 109.50210 * 182.44414 * 15 14 12 44 44 H 1.08992 * 109.50350 * 62.36429 * 15 14 12 45 45 H 1.08994 * 109.46856 * 299.14717 * 16 15 14 46 46 H 1.08998 * 109.45272 * 179.16880 * 16 15 14 47 47 H 1.08994 * 109.47277 * 54.21516 * 18 17 16 48 48 H 1.09008 * 109.46949 * 174.21533 * 18 17 16 49 49 H 0.97002 * 119.99751 * 0.02562 * 21 19 18 50 50 H 0.97005 * 119.99384 * 180.02562 * 25 24 22 51 51 H 1.08993 * 109.46202 * 301.72800 * 30 17 16 52 52 H 1.08996 * 109.46645 * 181.75471 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.3885 2.1717 0.4815 5 6 2.8439 1.9076 -1.2158 6 6 3.5502 1.6579 0.1183 7 1 4.1807 0.7721 0.1957 8 6 4.0229 2.8620 0.8914 9 8 3.2159 3.6170 1.3911 10 7 5.3425 3.0998 1.0276 11 6 5.8019 4.2736 1.7741 12 6 7.3315 4.3128 1.7720 13 1 7.7201 3.3716 2.1606 14 6 7.8355 4.5224 0.3414 15 6 9.3635 4.6213 0.3564 16 6 9.7873 5.7670 1.2783 17 7 9.2816 5.5184 2.6344 18 6 9.7853 6.5263 3.5770 19 6 11.2793 6.3838 3.7139 20 8 11.8667 5.5267 3.0881 21 7 11.9627 7.2082 4.5324 22 6 13.3218 7.0783 4.6573 23 1 13.8448 6.3156 4.0995 24 6 14.0263 7.9285 5.5008 25 7 13.3898 8.8568 6.1791 26 14 15.8782 7.7520 5.6705 27 1 16.3504 6.6392 4.8080 28 1 16.5362 9.0160 5.2530 29 1 16.2200 7.4599 7.0858 30 6 7.8142 5.4674 2.6529 31 1 -0.3632 0.5137 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8934 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 2.7212 2.9428 -1.5343 37 1 3.0101 1.1861 -2.0158 38 1 5.9880 2.4962 0.6277 39 1 5.4147 5.1777 1.3040 40 1 5.4414 4.2152 2.8010 41 1 7.5306 3.6798 -0.2793 42 1 7.4153 5.4438 -0.0616 43 1 9.7256 4.8139 -0.6534 44 1 9.7852 3.6851 0.7219 45 1 9.3773 6.7050 0.9041 46 1 10.8752 5.8301 1.3022 47 1 9.5480 7.5228 3.2047 48 1 9.3158 6.3805 4.5499 49 1 11.4927 7.8929 5.0337 50 1 13.8818 9.4505 6.7677 51 1 7.4134 6.4068 2.2722 52 1 7.4690 5.3132 3.6752 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491118014.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:53 Heat of formation + Delta-G solvation = -88.035950 kcal Electronic energy + Delta-G solvation = -28618.111013 eV Core-core repulsion = 24616.361370 eV Total energy + Delta-G solvation = -4001.749643 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.19658 -40.63205 -39.39711 -38.05589 -36.41550 -35.80868 -34.05916 -33.23462 -32.94406 -32.21580 -29.05782 -27.52801 -26.50339 -25.03328 -24.47509 -23.93460 -22.70139 -21.53070 -21.13981 -20.92596 -20.52587 -19.84959 -18.29419 -17.78676 -17.07626 -16.78327 -16.52501 -16.32868 -16.27672 -15.78111 -15.72060 -15.44932 -15.29135 -15.14405 -14.88592 -14.83568 -14.49479 -13.94098 -13.68597 -13.51323 -13.49208 -13.45448 -13.24676 -13.05122 -12.97036 -12.88072 -12.64856 -12.39937 -12.17817 -12.11706 -12.05221 -11.91558 -11.63284 -11.59443 -11.34606 -11.26622 -11.24205 -11.03819 -10.76968 -10.23095 -10.09458 -9.98655 -9.18510 -8.46027 -5.94514 1.36614 1.41763 1.48510 1.55891 2.06231 2.09695 2.29417 2.78039 2.87941 3.20937 3.39158 3.63287 3.74807 3.78607 3.81335 3.89223 3.90276 4.19945 4.20315 4.29690 4.30025 4.38212 4.42215 4.49402 4.49831 4.50493 4.55619 4.57603 4.64526 4.71577 4.79691 4.80043 4.92881 4.95959 5.01156 5.04870 5.08736 5.16888 5.18764 5.23691 5.29974 5.30871 5.40480 5.42217 5.50212 5.52424 5.91288 6.10903 6.26206 6.55086 6.61609 7.13972 7.24157 7.57539 8.13320 8.71679 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.036138 B = 0.001576 C = 0.001552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 774.623943 B =17766.478288 C =18031.628061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.126 4.126 4 H 0.091 0.909 5 C -0.135 4.135 6 C -0.194 4.194 7 H 0.149 0.851 8 C 0.536 3.464 9 O -0.590 6.590 10 N -0.711 5.711 11 C 0.134 3.866 12 C -0.082 4.082 13 H 0.086 0.914 14 C -0.106 4.106 15 C -0.107 4.107 16 C 0.051 3.949 17 N -0.530 5.530 18 C 0.057 3.943 19 C 0.442 3.558 20 O -0.612 6.612 21 N -0.575 5.575 22 C -0.331 4.331 23 H 0.079 0.921 24 C -0.013 4.013 25 N -0.922 5.922 26 Si 0.993 3.007 27 H -0.273 1.273 28 H -0.271 1.271 29 H -0.272 1.272 30 C 0.061 3.939 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.416 0.584 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.063 0.937 43 H 0.076 0.924 44 H 0.059 0.941 45 H 0.028 0.972 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.109 0.891 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.041 0.959 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.528 -14.186 -14.561 30.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.128 4.128 3 C -0.145 4.145 4 H 0.109 0.891 5 C -0.173 4.173 6 C -0.215 4.215 7 H 0.167 0.833 8 C 0.324 3.676 9 O -0.471 6.471 10 N -0.362 5.362 11 C 0.009 3.991 12 C -0.101 4.101 13 H 0.104 0.896 14 C -0.144 4.144 15 C -0.144 4.144 16 C -0.077 4.077 17 N -0.255 5.255 18 C -0.074 4.074 19 C 0.230 3.770 20 O -0.498 6.498 21 N -0.213 5.213 22 C -0.461 4.461 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.197 1.197 30 C -0.067 4.067 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.101 0.899 35 H 0.086 0.914 36 H 0.106 0.894 37 H 0.149 0.851 38 H 0.253 0.747 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.104 0.896 42 H 0.082 0.918 43 H 0.095 0.905 44 H 0.078 0.922 45 H 0.046 0.954 46 H 0.077 0.923 47 H 0.081 0.919 48 H 0.127 0.873 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.059 0.941 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.437 -14.521 -14.331 30.326 hybrid contribution 0.983 1.389 0.477 1.767 sum -21.454 -13.133 -13.854 28.717 Atomic orbital electron populations 1.21753 0.95182 1.02192 1.01740 1.21156 0.96293 0.92344 1.02977 1.22471 0.90961 0.99356 1.01729 0.89064 1.23187 1.00478 1.03290 0.90316 1.22375 0.98196 0.98431 1.02470 0.83291 1.20224 0.82133 0.85910 0.79334 1.90684 1.55195 1.50538 1.50672 1.45837 1.06897 1.28237 1.55257 1.21195 0.93240 0.88260 0.96363 1.21259 0.92744 0.99740 0.96405 0.89608 1.21623 0.94457 1.02748 0.95554 1.21483 0.96429 0.98027 0.98494 1.22191 1.00440 0.97228 0.87856 1.61435 1.08863 1.47973 1.07183 1.21715 0.91720 0.94993 0.98996 1.20744 0.90248 0.83462 0.82590 1.90458 1.71591 1.37960 1.49772 1.41949 1.07558 1.31563 1.40228 1.19698 0.83709 1.17093 1.25557 0.90272 1.26025 1.04754 0.95039 0.95457 1.69686 1.38289 1.19795 1.28520 0.84875 0.76979 0.78264 0.78247 1.19734 1.19663 1.19688 1.22093 0.85961 0.97702 1.00899 0.93507 0.92443 0.91563 0.89943 0.91367 0.89393 0.85142 0.74716 0.92016 0.92030 0.89592 0.91835 0.90519 0.92175 0.95404 0.92264 0.91864 0.87321 0.77120 0.91377 0.94060 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.87 71.98 0.71 -0.67 16 2 C -0.09 -0.81 6.22 30.60 0.19 -0.62 16 3 C -0.13 -1.67 5.25 -10.79 -0.06 -1.73 16 4 H 0.09 1.71 7.60 -2.39 -0.02 1.69 16 5 C -0.14 -1.39 9.88 30.59 0.30 -1.09 16 6 C -0.19 -2.42 5.91 -11.54 -0.07 -2.49 16 7 H 0.15 1.07 8.14 -2.39 -0.02 1.06 16 8 C 0.54 10.44 7.61 87.66 0.67 11.11 16 9 O -0.59 -16.98 16.26 -3.04 -0.05 -17.03 16 10 N -0.71 -10.85 5.31 -463.05 -2.46 -13.30 16 11 C 0.13 2.40 5.07 86.38 0.44 2.83 16 12 C -0.08 -1.53 2.39 -10.74 -0.03 -1.55 16 13 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 14 C -0.11 -1.85 5.13 30.68 0.16 -1.69 16 15 C -0.11 -2.54 6.09 30.65 0.19 -2.35 16 16 C 0.05 1.60 5.11 86.32 0.44 2.04 16 17 N -0.53 -16.85 4.40 -900.95 -3.96 -20.81 16 18 C 0.06 2.00 5.45 85.56 0.47 2.46 16 19 C 0.44 21.15 7.46 87.66 0.65 21.80 16 20 O -0.61 -33.60 13.90 -3.07 -0.04 -33.64 16 21 N -0.58 -29.75 5.29 -306.97 -1.62 -31.37 16 22 C -0.33 -18.88 9.68 84.04 0.81 -18.06 16 23 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 24 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 25 N -0.92 -50.06 13.05 21.66 0.28 -49.77 16 26 Si 0.99 43.11 29.55 68.60 2.03 45.14 16 27 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 30 C 0.06 1.43 4.74 86.33 0.41 1.84 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.08 0.48 7.88 -2.39 -0.02 0.46 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.13 0.67 8.03 -2.39 -0.02 0.65 16 38 H 0.42 4.09 7.67 -92.71 -0.71 3.38 16 39 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.09 1.08 7.26 -2.39 -0.02 1.06 16 42 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 45 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.06 2.41 5.78 -2.39 -0.01 2.40 16 47 H 0.06 2.02 8.12 -2.39 -0.02 2.00 16 48 H 0.11 3.38 7.99 -2.38 -0.02 3.36 16 49 H 0.40 19.48 7.90 -92.71 -0.73 18.75 16 50 H 0.28 14.05 8.31 -92.70 -0.77 13.28 16 51 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 52 H 0.08 1.82 8.02 -2.39 -0.02 1.81 16 Total: -1.00 -73.19 416.12 -0.60 -73.80 By element: Atomic # 1 Polarization: 35.92 SS G_CDS: -0.53 Total: 35.39 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 5.75 Total: 11.60 kcal Atomic # 7 Polarization: -107.50 SS G_CDS: -7.76 Total: -115.26 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.09 Total: -50.67 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.19 -0.60 -73.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491118014.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.241 kcal (2) G-P(sol) polarization free energy of solvation -73.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds