Wall clock time and date at job start Tue Mar 31 2020 19:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 115.54772 * 29.28020 * 3 2 1 5 5 C 1.52996 * 117.50257 * 243.61131 * 3 2 1 6 6 C 1.52994 * 117.50358 * 174.98462 * 3 2 1 7 7 H 1.09001 * 117.50160 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50325 * 214.97940 * 6 3 2 9 9 O 1.21281 * 120.00001 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00206 * 179.97438 * 8 6 3 11 11 C 1.46926 * 120.62988 * 359.72730 * 10 8 6 12 12 C 1.53626 * 108.54302 * 126.36531 * 11 10 8 13 13 C 1.53033 * 109.24360 * 54.85861 * 12 11 10 14 14 C 1.53041 * 109.53489 * 298.51165 * 13 12 11 15 15 H 1.08999 * 109.49600 * 301.41166 * 14 13 12 16 16 C 1.50700 * 109.49630 * 181.31648 * 14 13 12 17 17 O 1.21286 * 120.00097 * 240.15325 * 16 14 13 18 18 N 1.34784 * 120.00085 * 60.16470 * 16 14 13 19 19 C 1.46502 * 119.99872 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.46856 * 179.97438 * 19 18 16 21 21 N 1.46502 * 109.46856 * 180.02562 * 20 19 18 22 22 C 1.36937 * 119.99677 * 179.97438 * 21 20 19 23 23 H 1.08004 * 120.00098 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99853 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00146 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99897 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47093 * 90.00316 * 26 24 22 28 28 H 1.48497 * 109.46932 * 210.00043 * 26 24 22 29 29 H 1.48499 * 109.47235 * 330.00360 * 26 24 22 30 30 C 1.46918 * 120.63181 * 180.02562 * 10 8 6 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 1.08999 * 117.50085 * 359.97438 * 5 3 2 37 37 H 1.09003 * 117.49966 * 145.01994 * 5 3 2 38 38 H 1.08997 * 109.58746 * 246.19750 * 11 10 8 39 39 H 1.09008 * 109.58960 * 6.62307 * 11 10 8 40 40 H 1.08998 * 109.63440 * 294.85859 * 12 11 10 41 41 H 1.09003 * 109.43145 * 174.72357 * 12 11 10 42 42 H 1.09002 * 109.46696 * 178.49129 * 13 12 11 43 43 H 1.08999 * 109.45021 * 58.51796 * 13 12 11 44 44 H 0.96999 * 119.99611 * 359.97438 * 18 16 14 45 45 H 1.08997 * 109.47130 * 299.99452 * 19 18 16 46 46 H 1.08997 * 109.46947 * 59.99352 * 19 18 16 47 47 H 1.08997 * 109.47132 * 299.99852 * 20 19 18 48 48 H 1.09003 * 109.46885 * 59.99958 * 20 19 18 49 49 H 0.96997 * 120.00337 * 359.97438 * 21 20 19 50 50 H 0.96999 * 120.00758 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.58805 * 353.37614 * 30 10 8 52 52 H 1.09004 * 109.58734 * 113.65867 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4810 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7720 0.1963 8 6 4.0226 2.8621 0.8918 9 8 3.2155 3.6166 1.3920 10 7 5.3421 3.1001 1.0282 11 6 6.3320 2.1914 0.4340 12 6 7.2874 3.0153 -0.4426 13 6 7.8936 4.1437 0.3947 14 6 6.7793 5.0674 0.8920 15 1 6.2353 5.4731 0.0391 16 6 7.3801 6.1962 1.6894 17 8 7.0710 6.3490 2.8522 18 7 8.2608 7.0362 1.1102 19 6 8.8453 8.1333 1.8856 20 6 9.8054 8.9292 0.9992 21 7 10.3903 10.0259 1.7747 22 6 11.2860 10.8786 1.1866 23 1 11.5608 10.7429 0.1510 24 6 11.8398 11.9181 1.9212 25 7 11.5045 12.0838 3.1831 26 14 13.0611 13.0817 1.1188 27 1 12.3317 14.2266 0.5166 28 1 14.0121 13.5841 2.1426 29 1 13.8102 12.3596 0.0593 30 6 5.8181 4.2695 1.7795 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.0103 1.1857 -2.0153 37 1 2.7216 2.9427 -1.5342 38 1 6.8941 1.6954 1.2254 39 1 5.8233 1.4463 -0.1778 40 1 6.7386 3.4403 -1.2831 41 1 8.0836 2.3712 -0.8159 42 1 8.5926 4.7145 -0.2167 43 1 8.4212 3.7189 1.2486 44 1 8.5082 6.9139 0.1803 45 1 8.0513 8.7893 2.2424 46 1 9.3904 7.7262 2.7371 47 1 10.5993 8.2730 0.6427 48 1 9.2605 9.3362 0.1474 49 1 10.1432 10.1480 2.7047 50 1 11.8912 12.8103 3.6964 51 1 4.9702 4.8963 2.0557 52 1 6.3370 3.9393 2.6794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491705248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:11 Heat of formation + Delta-G solvation = -52.145270 kcal Electronic energy + Delta-G solvation = -28725.754616 eV Core-core repulsion = 24725.561309 eV Total energy + Delta-G solvation = -4000.193307 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.93087 -39.78875 -38.03197 -36.94719 -35.71483 -33.97216 -33.34342 -32.46951 -31.64484 -31.09893 -27.90730 -26.40610 -25.07593 -24.32604 -23.69397 -23.06313 -21.78250 -21.45954 -20.90974 -19.96364 -19.12986 -17.90058 -17.30683 -16.93896 -16.23465 -15.84135 -15.57230 -15.46733 -15.07026 -14.85214 -14.75777 -14.56487 -14.52217 -14.13332 -13.81639 -13.47858 -13.29322 -13.19189 -13.02725 -12.86895 -12.83567 -12.75225 -12.55868 -11.88814 -11.78567 -11.55733 -11.46686 -11.45555 -11.36623 -11.12212 -10.99151 -10.83672 -10.81432 -10.73971 -10.43339 -10.13513 -10.07053 -9.86230 -9.67144 -9.01965 -8.97561 -8.84513 -7.00958 -5.80768 -3.11712 2.15931 2.50034 2.65601 3.28015 3.37679 3.41383 3.46455 3.48311 3.95412 4.22563 4.27014 4.30657 4.41209 4.46874 4.56009 4.58462 4.60401 4.72371 4.80042 4.87245 4.95474 5.01108 5.02442 5.16588 5.19828 5.31038 5.34683 5.41544 5.43126 5.48734 5.51887 5.52668 5.54752 5.59452 5.64000 5.70516 5.76061 5.78974 5.87419 5.93433 5.94683 6.12247 6.15235 6.46169 6.68231 6.71791 7.04943 7.56772 7.64345 7.87263 8.27195 8.36718 9.47982 10.02688 10.37389 11.41748 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.001597 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.610428 B =17527.872211 C =17787.909634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.192 4.192 7 H 0.124 0.876 8 C 0.545 3.455 9 O -0.537 6.537 10 N -0.610 5.610 11 C 0.104 3.896 12 C -0.132 4.132 13 C -0.113 4.113 14 C -0.120 4.120 15 H 0.100 0.900 16 C 0.518 3.482 17 O -0.538 6.538 18 N -0.721 5.721 19 C 0.110 3.890 20 C 0.145 3.855 21 N -0.729 5.729 22 C -0.245 4.245 23 H 0.072 0.928 24 C -0.011 4.011 25 N -0.930 5.930 26 Si 0.910 3.090 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.281 1.281 30 C 0.132 3.868 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.099 0.901 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.399 0.601 45 H 0.069 0.931 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.024 0.976 49 H 0.386 0.614 50 H 0.257 0.743 51 H 0.100 0.900 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.431 -29.760 -11.549 35.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.213 4.213 7 H 0.142 0.858 8 C 0.333 3.667 9 O -0.414 6.414 10 N -0.342 5.342 11 C -0.019 4.019 12 C -0.171 4.171 13 C -0.151 4.151 14 C -0.143 4.143 15 H 0.119 0.881 16 C 0.302 3.698 17 O -0.415 6.415 18 N -0.372 5.372 19 C -0.013 4.013 20 C 0.017 3.983 21 N -0.374 5.374 22 C -0.376 4.376 23 H 0.090 0.910 24 C -0.207 4.207 25 N -0.578 5.578 26 Si 0.741 3.259 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C 0.010 3.990 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.233 0.767 45 H 0.088 0.912 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.042 0.958 49 H 0.220 0.780 50 H 0.067 0.933 51 H 0.118 0.882 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.962 -29.143 -10.527 35.324 hybrid contribution 1.034 0.759 -0.578 1.407 sum -15.928 -28.384 -11.105 34.390 Atomic orbital electron populations 1.21744 0.95074 1.01703 1.02258 1.21154 0.96405 0.93511 1.02118 1.22509 0.91302 0.98839 1.00990 0.86373 1.23109 1.01895 1.03266 0.90182 1.22318 0.97756 0.98927 1.02341 0.85799 1.19693 0.81664 0.85648 0.79706 1.90716 1.53368 1.48723 1.48547 1.48025 1.05440 1.26545 1.54239 1.21931 0.90650 0.92208 0.97126 1.21990 0.99098 0.97647 0.98324 1.21549 0.96602 0.96489 1.00488 1.21662 0.97912 0.94921 0.99779 0.88144 1.20303 0.79124 0.82768 0.87572 1.90738 1.60632 1.73134 1.16998 1.45930 1.44918 1.30827 1.15511 1.21594 0.97007 0.87710 0.95032 1.20751 0.93517 0.90267 0.93784 1.42187 1.51799 1.31315 1.12147 1.19191 1.16856 1.06106 0.95493 0.91043 1.24777 1.00703 0.99277 0.95987 1.69663 1.47163 1.33477 1.07501 0.86153 0.80707 0.81016 0.78051 1.21616 1.21665 1.20710 1.21354 0.98371 0.86415 0.92907 0.92420 0.92577 0.92478 0.91406 0.91649 0.87728 0.88243 0.90991 0.89291 0.91005 0.89996 0.90601 0.90797 0.76705 0.91242 0.91237 0.95839 0.95848 0.77992 0.93340 0.88185 0.90264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 9.87 37.16 0.37 -0.36 16 2 C -0.09 -0.47 6.22 -26.73 -0.17 -0.64 16 3 C -0.12 -0.81 5.25 -90.63 -0.48 -1.29 16 4 H 0.12 1.06 7.60 -51.93 -0.39 0.67 16 5 C -0.15 -0.85 9.88 -26.73 -0.26 -1.12 16 6 C -0.19 -1.33 4.69 -91.77 -0.43 -1.76 16 7 H 0.12 0.58 6.80 -51.93 -0.35 0.23 16 8 C 0.54 5.76 7.48 -10.99 -0.08 5.67 16 9 O -0.54 -7.96 15.67 5.56 0.09 -7.87 16 10 N -0.61 -5.50 2.97 -172.48 -0.51 -6.01 16 11 C 0.10 0.56 6.33 -3.49 -0.02 0.54 16 12 C -0.13 -0.65 6.10 -26.39 -0.16 -0.81 16 13 C -0.11 -0.80 5.07 -26.69 -0.14 -0.93 16 14 C -0.12 -1.18 2.68 -91.63 -0.25 -1.43 16 15 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 16 C 0.52 7.13 7.16 -10.98 -0.08 7.05 16 17 O -0.54 -9.76 15.92 5.55 0.09 -9.67 16 18 N -0.72 -9.51 5.44 -60.29 -0.33 -9.84 16 19 C 0.11 1.88 5.79 -4.04 -0.02 1.86 16 20 C 0.15 2.81 6.37 -4.04 -0.03 2.79 16 21 N -0.73 -18.53 5.60 -59.91 -0.34 -18.86 16 22 C -0.25 -6.85 9.99 -15.06 -0.15 -7.00 16 23 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 25 N -0.93 -28.28 13.06 55.49 0.72 -27.55 16 26 Si 0.91 22.26 29.55 -169.99 -5.02 17.23 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 29 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 30 C 0.13 1.48 5.06 -3.69 -0.02 1.46 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.25 7.88 -51.93 -0.41 -0.15 16 36 H 0.10 0.39 8.03 -51.93 -0.42 -0.02 16 37 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.09 0.32 5.67 -51.92 -0.29 0.02 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 42 H 0.08 0.47 7.54 -51.93 -0.39 0.08 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.40 4.08 7.88 -40.82 -0.32 3.75 16 45 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 46 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 47 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 48 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.39 10.42 7.67 -40.82 -0.31 10.11 16 50 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 51 H 0.10 1.40 7.01 -51.93 -0.36 1.04 16 52 H 0.08 0.93 7.96 -51.93 -0.41 0.52 16 LS Contribution 417.13 15.07 6.29 6.29 Total: -1.00 -35.37 417.13 -10.16 -45.53 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -9.14 Total: 7.14 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -2.01 Total: 3.62 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.45 Total: -62.27 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: 0.18 Total: -17.54 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -35.37 -10.16 -45.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491705248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.613 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds