Wall clock time and date at job start Tue Mar 31 2020 19:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09006 * 115.54772 * 29.28020 * 3 2 1 5 5 C 1.52996 * 117.50257 * 243.61131 * 3 2 1 6 6 C 1.52994 * 117.50358 * 174.98462 * 3 2 1 7 7 H 1.09001 * 117.50160 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.50325 * 214.97940 * 6 3 2 9 9 O 1.21281 * 120.00001 * 0.02562 * 8 6 3 10 10 N 1.34775 * 120.00206 * 179.97438 * 8 6 3 11 11 C 1.46926 * 120.62988 * 359.72730 * 10 8 6 12 12 C 1.53626 * 108.54302 * 126.36531 * 11 10 8 13 13 C 1.53033 * 109.24360 * 54.85861 * 12 11 10 14 14 C 1.53041 * 109.53489 * 298.51165 * 13 12 11 15 15 H 1.08999 * 109.49600 * 301.41166 * 14 13 12 16 16 C 1.50700 * 109.49630 * 181.31648 * 14 13 12 17 17 O 1.21286 * 120.00097 * 240.15325 * 16 14 13 18 18 N 1.34784 * 120.00085 * 60.16470 * 16 14 13 19 19 C 1.46502 * 119.99872 * 180.02562 * 18 16 14 20 20 C 1.52998 * 109.46856 * 179.97438 * 19 18 16 21 21 N 1.46502 * 109.46856 * 180.02562 * 20 19 18 22 22 C 1.36937 * 119.99677 * 179.97438 * 21 20 19 23 23 H 1.08004 * 120.00098 * 0.02562 * 22 21 20 24 24 C 1.38813 * 119.99853 * 179.97438 * 22 21 20 25 25 N 1.31612 * 120.00146 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99897 * 180.02562 * 24 22 21 27 27 H 1.48505 * 109.47093 * 90.00316 * 26 24 22 28 28 H 1.48497 * 109.46932 * 210.00043 * 26 24 22 29 29 H 1.48499 * 109.47235 * 330.00360 * 26 24 22 30 30 C 1.46918 * 120.63181 * 180.02562 * 10 8 6 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 36 36 H 1.08999 * 117.50085 * 359.97438 * 5 3 2 37 37 H 1.09003 * 117.49966 * 145.01994 * 5 3 2 38 38 H 1.08997 * 109.58746 * 246.19750 * 11 10 8 39 39 H 1.09008 * 109.58960 * 6.62307 * 11 10 8 40 40 H 1.08998 * 109.63440 * 294.85859 * 12 11 10 41 41 H 1.09003 * 109.43145 * 174.72357 * 12 11 10 42 42 H 1.09002 * 109.46696 * 178.49129 * 13 12 11 43 43 H 1.08999 * 109.45021 * 58.51796 * 13 12 11 44 44 H 0.96999 * 119.99611 * 359.97438 * 18 16 14 45 45 H 1.08997 * 109.47130 * 299.99452 * 19 18 16 46 46 H 1.08997 * 109.46947 * 59.99352 * 19 18 16 47 47 H 1.08997 * 109.47132 * 299.99852 * 20 19 18 48 48 H 1.09003 * 109.46885 * 59.99958 * 20 19 18 49 49 H 0.96997 * 120.00337 * 359.97438 * 21 20 19 50 50 H 0.96999 * 120.00758 * 180.02562 * 25 24 22 51 51 H 1.09000 * 109.58805 * 353.37614 * 30 10 8 52 52 H 1.09004 * 109.58734 * 113.65867 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3880 2.1717 0.4810 5 6 2.8442 1.9075 -1.2157 6 6 3.5501 1.6579 0.1186 7 1 4.1803 0.7720 0.1963 8 6 4.0226 2.8621 0.8918 9 8 3.2155 3.6166 1.3920 10 7 5.3421 3.1001 1.0282 11 6 6.3320 2.1914 0.4340 12 6 7.2874 3.0153 -0.4426 13 6 7.8936 4.1437 0.3947 14 6 6.7793 5.0674 0.8920 15 1 6.2353 5.4731 0.0391 16 6 7.3801 6.1962 1.6894 17 8 7.0710 6.3490 2.8522 18 7 8.2608 7.0362 1.1102 19 6 8.8453 8.1333 1.8856 20 6 9.8054 8.9292 0.9992 21 7 10.3903 10.0259 1.7747 22 6 11.2860 10.8786 1.1866 23 1 11.5608 10.7429 0.1510 24 6 11.8398 11.9181 1.9212 25 7 11.5045 12.0838 3.1831 26 14 13.0611 13.0817 1.1188 27 1 12.3317 14.2266 0.5166 28 1 14.0121 13.5841 2.1426 29 1 13.8102 12.3596 0.0593 30 6 5.8181 4.2695 1.7795 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 3.0103 1.1857 -2.0153 37 1 2.7216 2.9427 -1.5342 38 1 6.8941 1.6954 1.2254 39 1 5.8233 1.4463 -0.1778 40 1 6.7386 3.4403 -1.2831 41 1 8.0836 2.3712 -0.8159 42 1 8.5926 4.7145 -0.2167 43 1 8.4212 3.7189 1.2486 44 1 8.5082 6.9139 0.1803 45 1 8.0513 8.7893 2.2424 46 1 9.3904 7.7262 2.7371 47 1 10.5993 8.2730 0.6427 48 1 9.2605 9.3362 0.1474 49 1 10.1432 10.1480 2.7047 50 1 11.8912 12.8103 3.6964 51 1 4.9702 4.8963 2.0557 52 1 6.3370 3.9393 2.6794 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491705248.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:10 Heat of formation + Delta-G solvation = -76.451859 kcal Electronic energy + Delta-G solvation = -28726.808629 eV Core-core repulsion = 24725.561309 eV Total energy + Delta-G solvation = -4001.247319 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.75621 -40.81544 -38.73256 -37.69680 -37.31687 -35.57043 -34.24929 -33.09326 -32.88556 -32.21559 -29.53398 -27.19349 -26.07424 -25.23500 -24.68373 -23.93796 -23.08045 -22.45078 -21.45554 -20.97606 -19.80003 -19.34550 -18.63041 -17.92471 -17.10395 -16.99453 -16.76644 -16.52328 -16.21543 -15.80885 -15.51169 -15.48225 -15.29409 -15.18090 -15.02365 -14.91976 -14.50709 -14.26378 -14.09261 -13.71915 -13.44398 -13.33667 -13.10130 -13.05070 -12.97486 -12.68463 -12.60415 -12.52067 -12.22963 -12.09328 -12.07721 -11.98844 -11.89480 -11.86247 -11.67208 -11.25475 -11.00851 -11.00018 -10.86544 -10.75966 -10.19777 -9.74823 -9.07734 -7.97539 -5.29237 1.40277 1.48117 1.50606 1.52085 1.59009 1.70998 2.18710 2.57723 2.84356 3.35867 3.36950 3.51550 3.68935 3.73376 3.78423 3.84992 3.98723 4.04059 4.04945 4.13950 4.18430 4.19489 4.23421 4.29191 4.48069 4.50651 4.55213 4.56803 4.63395 4.73842 4.78439 4.80341 4.89132 4.94985 4.99817 5.00320 5.08557 5.10187 5.11562 5.16641 5.23827 5.30751 5.33082 5.37299 5.44463 5.48128 5.50656 6.22843 6.34302 6.47001 7.09083 7.16608 7.29196 8.00982 8.23797 9.26137 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032339 B = 0.001597 C = 0.001574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.610428 B =17527.872211 C =17787.909634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.130 4.130 4 H 0.085 0.915 5 C -0.130 4.130 6 C -0.190 4.190 7 H 0.157 0.843 8 C 0.534 3.466 9 O -0.594 6.594 10 N -0.604 5.604 11 C 0.095 3.905 12 C -0.124 4.124 13 C -0.112 4.112 14 C -0.105 4.105 15 H 0.113 0.887 16 C 0.516 3.484 17 O -0.587 6.587 18 N -0.706 5.706 19 C 0.127 3.873 20 C 0.150 3.850 21 N -0.748 5.748 22 C -0.249 4.249 23 H 0.084 0.916 24 C -0.076 4.076 25 N -0.971 5.971 26 Si 0.979 3.021 27 H -0.287 1.287 28 H -0.297 1.297 29 H -0.264 1.264 30 C 0.135 3.865 31 H 0.042 0.958 32 H 0.067 0.933 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.138 0.862 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.077 0.923 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.418 0.582 45 H 0.049 0.951 46 H 0.054 0.946 47 H 0.041 0.959 48 H 0.037 0.963 49 H 0.373 0.627 50 H 0.252 0.748 51 H 0.061 0.939 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.179 -32.544 -15.216 39.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.125 4.125 3 C -0.149 4.149 4 H 0.103 0.897 5 C -0.167 4.167 6 C -0.210 4.210 7 H 0.174 0.826 8 C 0.324 3.676 9 O -0.475 6.475 10 N -0.335 5.335 11 C -0.026 4.026 12 C -0.162 4.162 13 C -0.149 4.149 14 C -0.127 4.127 15 H 0.131 0.869 16 C 0.303 3.697 17 O -0.468 6.468 18 N -0.358 5.358 19 C 0.002 3.998 20 C 0.023 3.977 21 N -0.391 5.391 22 C -0.381 4.381 23 H 0.102 0.898 24 C -0.268 4.268 25 N -0.622 5.622 26 Si 0.808 3.192 27 H -0.214 1.214 28 H -0.223 1.223 29 H -0.189 1.189 30 C 0.011 3.989 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.156 0.844 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.096 0.904 41 H 0.129 0.871 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.255 0.745 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.205 0.795 50 H 0.061 0.939 51 H 0.080 0.920 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.682 -31.993 -14.291 38.389 hybrid contribution 0.579 1.584 0.576 1.783 sum -15.103 -30.408 -13.715 36.618 Atomic orbital electron populations 1.21759 0.95400 1.02202 1.01605 1.21142 0.96106 0.92093 1.03161 1.22494 0.90990 0.99473 1.01959 0.89658 1.23199 1.00010 1.03298 0.90191 1.22364 0.98018 0.98078 1.02561 0.82602 1.20470 0.81622 0.86188 0.79321 1.90691 1.54908 1.50893 1.51007 1.48128 1.05874 1.26095 1.53444 1.22305 0.90261 0.92151 0.97841 1.21989 0.99608 0.96968 0.97654 1.21622 0.95596 0.96811 1.00920 1.21588 0.98509 0.93745 0.98836 0.86882 1.21052 0.78326 0.83163 0.87208 1.90722 1.62178 1.74376 1.19477 1.45702 1.44471 1.29548 1.16099 1.21155 0.95842 0.88166 0.94649 1.20850 0.94116 0.89147 0.93601 1.42435 1.51944 1.32655 1.12077 1.19669 1.16393 1.06015 0.95995 0.89773 1.25673 1.03158 1.01414 0.96600 1.69837 1.48901 1.34274 1.09139 0.85059 0.78229 0.78751 0.77197 1.21379 1.22325 1.18857 1.21086 0.97119 0.87224 0.93486 0.93832 0.91426 0.92483 0.91334 0.89470 0.84434 0.89727 0.90123 0.86475 0.90438 0.87097 0.89016 0.91289 0.74469 0.93292 0.92743 0.94080 0.94549 0.79546 0.93934 0.92001 0.91440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.87 71.98 0.71 -0.64 16 2 C -0.09 -0.70 6.22 30.59 0.19 -0.51 16 3 C -0.13 -1.70 5.25 -10.80 -0.06 -1.75 16 4 H 0.09 1.69 7.60 -2.38 -0.02 1.67 16 5 C -0.13 -1.20 9.88 30.59 0.30 -0.90 16 6 C -0.19 -2.26 4.69 -11.54 -0.05 -2.31 16 7 H 0.16 0.83 6.80 -2.39 -0.02 0.81 16 8 C 0.53 11.33 7.48 87.66 0.66 11.99 16 9 O -0.59 -19.02 15.67 -3.03 -0.05 -19.07 16 10 N -0.60 -10.44 2.97 -817.99 -2.43 -12.86 16 11 C 0.10 0.72 6.33 86.51 0.55 1.27 16 12 C -0.12 -0.70 6.10 30.82 0.19 -0.51 16 13 C -0.11 -1.25 5.07 30.62 0.16 -1.10 16 14 C -0.10 -1.97 2.68 -11.45 -0.03 -2.00 16 15 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 16 C 0.52 14.31 7.16 87.66 0.63 14.94 16 17 O -0.59 -22.42 15.92 -3.05 -0.05 -22.47 16 18 N -0.71 -18.00 5.44 -463.05 -2.52 -20.52 16 19 C 0.13 4.36 5.79 86.38 0.50 4.86 16 20 C 0.15 5.64 6.37 86.38 0.55 6.19 16 21 N -0.75 -38.08 5.60 -343.45 -1.92 -40.00 16 22 C -0.25 -13.76 9.99 84.03 0.84 -12.92 16 23 H 0.08 4.33 7.83 -2.91 -0.02 4.31 16 24 C -0.08 -4.37 5.50 84.86 0.47 -3.90 16 25 N -0.97 -60.19 13.06 21.65 0.28 -59.90 16 26 Si 0.98 45.62 29.55 68.60 2.03 47.65 16 27 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 28 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 29 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 30 C 0.13 3.15 5.06 86.38 0.44 3.59 16 31 H 0.04 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 34 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.35 7.88 -2.39 -0.02 0.33 16 36 H 0.14 0.40 8.03 -2.39 -0.02 0.38 16 37 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.12 0.27 5.67 -2.38 -0.01 0.26 16 40 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.11 0.12 8.14 -2.39 -0.02 0.10 16 42 H 0.09 0.78 7.54 -2.39 -0.02 0.76 16 43 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 44 H 0.42 7.51 7.88 -92.71 -0.73 6.78 16 45 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 47 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.37 20.68 7.67 -92.71 -0.71 19.97 16 50 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 51 H 0.06 1.92 7.01 -2.39 -0.02 1.90 16 52 H 0.07 1.70 7.96 -2.38 -0.02 1.69 16 Total: -1.00 -81.66 417.13 0.85 -80.81 By element: Atomic # 1 Polarization: 30.62 SS G_CDS: -0.53 Total: 30.09 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 6.03 Total: 16.28 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -6.59 Total: -133.29 kcal Atomic # 8 Polarization: -41.44 SS G_CDS: -0.10 Total: -41.54 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -81.66 0.85 -80.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491705248.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.360 kcal (2) G-P(sol) polarization free energy of solvation -81.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds