Wall clock time and date at job start Tue Mar 31 2020 19:57:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47156 * 2 1 4 4 H 1.09005 * 115.55961 * 29.31045 * 3 2 1 5 5 C 1.53002 * 117.50012 * 243.62145 * 3 2 1 6 6 C 1.53001 * 117.50047 * 174.99706 * 3 2 1 7 7 H 1.08995 * 117.51879 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49811 * 214.97869 * 6 3 2 9 9 O 1.21280 * 120.00059 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99746 * 179.97438 * 8 6 3 11 11 C 1.46934 * 120.63437 * 359.97438 * 10 8 6 12 12 C 1.53184 * 108.77722 * 126.41082 * 11 10 8 13 13 C 1.53040 * 109.31577 * 54.63498 * 12 11 10 14 14 C 1.53037 * 109.53779 * 298.63676 * 13 12 11 15 15 H 1.09010 * 109.51958 * 301.39414 * 14 13 12 16 16 N 1.46897 * 109.49669 * 181.31560 * 14 13 12 17 17 C 1.46906 * 110.99814 * 184.11413 * 16 14 13 18 18 C 1.46905 * 111.00158 * 60.16050 * 16 14 13 19 19 C 1.50695 * 109.46944 * 189.99717 * 18 16 14 20 20 O 1.21293 * 120.00365 * 0.02562 * 19 18 16 21 21 N 1.34779 * 119.99729 * 179.97438 * 19 18 16 22 22 C 1.37096 * 120.00063 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00043 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00370 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99973 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00319 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47196 * 60.00134 * 26 24 22 28 28 H 1.48505 * 109.47040 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47257 * 299.99661 * 26 24 22 30 30 C 1.46929 * 120.63071 * 179.97438 * 10 8 6 31 31 H 1.09008 * 109.47041 * 60.00248 * 1 2 3 32 32 H 1.09003 * 109.46641 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47590 * 300.00288 * 1 2 3 34 34 H 1.08997 * 109.47764 * 240.00232 * 2 1 3 35 35 H 1.08994 * 109.47165 * 119.99819 * 2 1 3 36 36 H 1.08996 * 117.49606 * 145.01859 * 5 3 2 37 37 H 1.09006 * 117.51807 * 359.97438 * 5 3 2 38 38 H 1.09003 * 109.58384 * 246.20189 * 11 10 8 39 39 H 1.09002 * 109.57975 * 6.47965 * 11 10 8 40 40 H 1.09003 * 109.49863 * 174.59159 * 12 11 10 41 41 H 1.09009 * 109.49845 * 294.65020 * 12 11 10 42 42 H 1.08995 * 109.46021 * 178.61054 * 13 12 11 43 43 H 1.08992 * 109.45751 * 58.65448 * 13 12 11 44 44 H 1.08992 * 109.47459 * 59.99744 * 17 16 14 45 45 H 1.09004 * 109.47040 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.47033 * 299.99847 * 17 16 14 47 47 H 1.09002 * 109.46783 * 309.99945 * 18 16 14 48 48 H 1.09005 * 109.46676 * 69.99987 * 18 16 14 49 49 H 0.96997 * 120.00358 * 0.02562 * 21 19 18 50 50 H 0.96996 * 120.00435 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.58500 * 113.80220 * 30 10 8 52 52 H 1.09002 * 109.70020 * 353.44805 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6580 0.1184 7 1 4.1807 0.7723 0.1958 8 6 4.0228 2.8621 0.8915 9 8 3.2157 3.6170 1.3911 10 7 5.3423 3.1000 1.0277 11 6 6.3321 2.1943 0.4287 12 6 7.2873 3.0151 -0.4434 13 6 7.8937 4.1437 0.3937 14 6 6.7795 5.0674 0.8911 15 1 6.2352 5.4735 0.0383 16 7 7.3653 6.1678 1.6681 17 6 6.3176 7.0215 2.2440 18 6 8.2942 6.9559 0.8470 19 6 9.0554 7.9127 1.7279 20 8 8.8452 7.9357 2.9222 21 7 9.9706 8.7423 1.1887 22 6 10.6635 9.6124 1.9901 23 1 10.4757 9.6335 3.0535 24 6 11.6066 10.4681 1.4342 25 7 11.8348 10.4429 0.1403 26 14 12.5502 11.6542 2.5261 27 1 13.3154 10.8889 3.5430 28 1 13.4898 12.4503 1.6962 29 1 11.5962 12.5659 3.2071 30 6 5.8184 4.2701 1.7780 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8899 36 1 2.7212 2.9428 -1.5343 37 1 3.0102 1.1860 -2.0158 38 1 6.8950 1.6952 1.2174 39 1 5.8229 1.4502 -0.1838 40 1 8.0834 2.3709 -0.8168 41 1 6.7385 3.4395 -1.2842 42 1 8.5925 4.7142 -0.2179 43 1 8.4215 3.7191 1.2475 44 1 5.6853 6.4265 2.9028 45 1 6.7787 7.8279 2.8144 46 1 5.7114 7.4436 1.4424 47 1 8.9945 6.2867 0.3471 48 1 7.7325 7.5176 0.1006 49 1 10.1391 8.7237 0.2336 50 1 12.4935 11.0399 -0.2477 51 1 6.3395 3.9405 2.6769 52 1 4.9718 4.8979 2.0559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491952268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:17 Heat of formation + Delta-G solvation = -43.004873 kcal Electronic energy + Delta-G solvation = -29627.471818 eV Core-core repulsion = 25627.674868 eV Total energy + Delta-G solvation = -3999.796949 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.69525 -39.07998 -38.00869 -37.02413 -35.73651 -33.85137 -32.61968 -32.39331 -31.24317 -30.34936 -28.05246 -26.31531 -25.04829 -24.50118 -24.13612 -23.21235 -21.99426 -20.95763 -20.15984 -19.13099 -18.95194 -17.82548 -17.68953 -16.38543 -16.15200 -15.43298 -15.27192 -15.01432 -14.94033 -14.82391 -14.50416 -14.35406 -14.25887 -13.86346 -13.68570 -13.39734 -13.21610 -13.06494 -12.83064 -12.71297 -12.56127 -12.48187 -12.02631 -11.74633 -11.66439 -11.55085 -11.49018 -11.41168 -11.24879 -11.08839 -10.84978 -10.82839 -10.65572 -10.43246 -10.39231 -10.32993 -10.19868 -9.92631 -9.45138 -8.82112 -8.42172 -7.96448 -7.84304 -6.40198 -3.80927 2.27594 2.67945 3.21158 3.26651 3.31170 3.47269 3.91834 3.97646 4.07907 4.24268 4.36812 4.38613 4.54425 4.70522 4.73007 4.75912 4.81386 4.92797 4.94127 5.02990 5.09388 5.17463 5.26210 5.27183 5.29307 5.36822 5.41954 5.51296 5.54840 5.59698 5.67955 5.70070 5.70329 5.74928 5.76300 5.81293 5.84847 5.95377 6.00198 6.01944 6.07284 6.23123 6.29481 6.32764 6.59578 7.20017 7.27835 7.40798 7.56509 7.99905 8.07906 8.63701 9.19762 9.56166 10.08347 10.77516 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032873 B = 0.001908 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.555859 B =14668.279253 C =15024.230934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.094 4.094 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.147 4.147 6 C -0.191 4.191 7 H 0.124 0.876 8 C 0.544 3.456 9 O -0.542 6.542 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.132 4.132 13 C -0.119 4.119 14 C 0.073 3.927 15 H 0.040 0.960 16 N -0.511 5.511 17 C 0.018 3.982 18 C 0.043 3.957 19 C 0.445 3.555 20 O -0.577 6.577 21 N -0.565 5.565 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 C 0.118 3.882 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.014 0.986 47 H 0.091 0.909 48 H 0.046 0.954 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.079 0.921 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.558 -22.167 -6.790 27.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.137 4.137 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.212 4.212 7 H 0.142 0.858 8 C 0.333 3.667 9 O -0.419 6.419 10 N -0.339 5.339 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.157 4.157 14 C -0.036 4.036 15 H 0.058 0.942 16 N -0.235 5.235 17 C -0.129 4.129 18 C -0.088 4.088 19 C 0.230 3.770 20 O -0.461 6.461 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 C -0.004 4.004 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.090 0.910 39 H 0.104 0.896 40 H 0.098 0.902 41 H 0.085 0.915 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.081 0.919 45 H 0.116 0.884 46 H 0.033 0.967 47 H 0.109 0.891 48 H 0.064 0.936 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.097 0.903 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -15.719 -21.821 -5.426 27.435 hybrid contribution 0.465 0.999 -0.892 1.418 sum -15.254 -20.821 -6.319 26.573 Atomic orbital electron populations 1.21742 0.95118 1.01657 1.02229 1.21152 0.96353 0.93557 1.02116 1.22502 0.91376 0.98767 1.01032 0.86420 1.23103 1.01938 1.03228 0.90221 1.22319 0.97631 0.99010 1.02287 0.85810 1.19664 0.81713 0.85625 0.79729 1.90693 1.53437 1.48845 1.48931 1.48007 1.05362 1.26615 1.53919 1.21827 0.90624 0.92157 0.97100 1.21914 0.98914 0.97889 0.98387 1.21681 0.97560 0.96153 1.00257 1.21921 0.94710 0.92358 0.94661 0.94234 1.61593 1.17418 1.10847 1.33668 1.22598 0.93248 0.98301 0.98780 1.21932 0.96051 0.96094 0.94727 1.19715 0.84050 0.84297 0.88900 1.90486 1.68411 1.71652 1.15504 1.41853 1.34529 1.33271 1.10492 1.19650 1.16505 1.13351 0.93332 0.87968 1.25247 0.97856 0.98635 0.96177 1.69602 1.34989 1.39407 1.10413 0.85922 0.79128 0.79873 0.79311 1.19909 1.21011 1.19944 1.21662 0.98265 0.86547 0.93956 0.92500 0.92602 0.92443 0.91655 0.91411 0.88305 0.87752 0.91021 0.89584 0.90209 0.91517 0.90929 0.90469 0.91873 0.88386 0.96711 0.89051 0.93593 0.77541 0.91867 0.90261 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.87 37.16 0.37 -0.46 16 2 C -0.09 -0.55 6.22 -26.73 -0.17 -0.72 16 3 C -0.12 -0.94 5.25 -90.62 -0.48 -1.41 16 4 H 0.12 1.17 7.60 -51.93 -0.39 0.78 16 5 C -0.15 -1.05 9.88 -26.73 -0.26 -1.31 16 6 C -0.19 -1.59 4.69 -91.77 -0.43 -2.02 16 7 H 0.12 0.76 6.81 -51.93 -0.35 0.40 16 8 C 0.54 6.57 7.48 -10.99 -0.08 6.49 16 9 O -0.54 -8.65 15.67 5.56 0.09 -8.56 16 10 N -0.61 -6.68 2.97 -172.78 -0.51 -7.19 16 11 C 0.11 0.82 6.30 -3.71 -0.02 0.80 16 12 C -0.13 -1.07 6.08 -26.62 -0.16 -1.24 16 13 C -0.12 -1.33 5.00 -26.69 -0.13 -1.46 16 14 C 0.07 0.98 2.09 -67.61 -0.14 0.84 16 15 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 16 N -0.51 -8.65 4.37 -236.20 -1.03 -9.68 16 17 C 0.02 0.32 8.75 60.07 0.53 0.84 16 18 C 0.04 0.78 5.27 -4.98 -0.03 0.75 16 19 C 0.44 10.53 7.47 -10.99 -0.08 10.45 16 20 O -0.58 -15.53 13.91 5.55 0.08 -15.45 16 21 N -0.56 -14.33 5.29 -10.97 -0.06 -14.39 16 22 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 26 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 30 C 0.12 1.54 5.15 -3.72 -0.02 1.52 16 31 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.10 0.52 8.03 -51.93 -0.42 0.11 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.48 5.67 -51.93 -0.29 0.19 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 42 H 0.07 0.84 6.14 -51.93 -0.32 0.52 16 43 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.06 0.99 6.36 -51.93 -0.33 0.66 16 45 H 0.10 2.00 5.83 -51.93 -0.30 1.70 16 46 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 47 H 0.09 1.48 5.81 -51.93 -0.30 1.18 16 48 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 52 H 0.09 1.40 5.56 -51.93 -0.29 1.11 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -32.81 405.69 -9.72 -42.52 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.74 Total: 9.29 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.35 Total: 5.08 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -0.88 Total: -55.10 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: 0.16 Total: -24.01 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.81 -9.72 -42.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491952268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.482 kcal (2) G-P(sol) polarization free energy of solvation -32.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds