Wall clock time and date at job start Tue Mar 31 2020 19:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47156 * 2 1 4 4 H 1.09005 * 115.55961 * 29.31045 * 3 2 1 5 5 C 1.53002 * 117.50012 * 243.62145 * 3 2 1 6 6 C 1.53001 * 117.50047 * 174.99706 * 3 2 1 7 7 H 1.08995 * 117.51879 * 0.02562 * 6 3 2 8 8 C 1.50702 * 117.49811 * 214.97869 * 6 3 2 9 9 O 1.21280 * 120.00059 * 359.97438 * 8 6 3 10 10 N 1.34771 * 119.99746 * 179.97438 * 8 6 3 11 11 C 1.46934 * 120.63437 * 359.97438 * 10 8 6 12 12 C 1.53184 * 108.77722 * 126.41082 * 11 10 8 13 13 C 1.53040 * 109.31577 * 54.63498 * 12 11 10 14 14 C 1.53037 * 109.53779 * 298.63676 * 13 12 11 15 15 H 1.09010 * 109.51958 * 301.39414 * 14 13 12 16 16 N 1.46897 * 109.49669 * 181.31560 * 14 13 12 17 17 C 1.46906 * 110.99814 * 184.11413 * 16 14 13 18 18 C 1.46905 * 111.00158 * 60.16050 * 16 14 13 19 19 C 1.50695 * 109.46944 * 189.99717 * 18 16 14 20 20 O 1.21293 * 120.00365 * 0.02562 * 19 18 16 21 21 N 1.34779 * 119.99729 * 179.97438 * 19 18 16 22 22 C 1.37096 * 120.00063 * 180.02562 * 21 19 18 23 23 H 1.08001 * 120.00043 * 359.97438 * 22 21 19 24 24 C 1.38944 * 120.00370 * 180.02562 * 22 21 19 25 25 N 1.31412 * 119.99973 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00319 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.47196 * 60.00134 * 26 24 22 28 28 H 1.48505 * 109.47040 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47257 * 299.99661 * 26 24 22 30 30 C 1.46929 * 120.63071 * 179.97438 * 10 8 6 31 31 H 1.09008 * 109.47041 * 60.00248 * 1 2 3 32 32 H 1.09003 * 109.46641 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47590 * 300.00288 * 1 2 3 34 34 H 1.08997 * 109.47764 * 240.00232 * 2 1 3 35 35 H 1.08994 * 109.47165 * 119.99819 * 2 1 3 36 36 H 1.08996 * 117.49606 * 145.01859 * 5 3 2 37 37 H 1.09006 * 117.51807 * 359.97438 * 5 3 2 38 38 H 1.09003 * 109.58384 * 246.20189 * 11 10 8 39 39 H 1.09002 * 109.57975 * 6.47965 * 11 10 8 40 40 H 1.09003 * 109.49863 * 174.59159 * 12 11 10 41 41 H 1.09009 * 109.49845 * 294.65020 * 12 11 10 42 42 H 1.08995 * 109.46021 * 178.61054 * 13 12 11 43 43 H 1.08992 * 109.45751 * 58.65448 * 13 12 11 44 44 H 1.08992 * 109.47459 * 59.99744 * 17 16 14 45 45 H 1.09004 * 109.47040 * 179.97438 * 17 16 14 46 46 H 1.09000 * 109.47033 * 299.99847 * 17 16 14 47 47 H 1.09002 * 109.46783 * 309.99945 * 18 16 14 48 48 H 1.09005 * 109.46676 * 69.99987 * 18 16 14 49 49 H 0.96997 * 120.00358 * 0.02562 * 21 19 18 50 50 H 0.96996 * 120.00435 * 180.02562 * 25 24 22 51 51 H 1.08999 * 109.58500 * 113.80220 * 30 10 8 52 52 H 1.09002 * 109.70020 * 353.44805 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8440 1.9076 -1.2158 6 6 3.5501 1.6580 0.1184 7 1 4.1807 0.7723 0.1958 8 6 4.0228 2.8621 0.8915 9 8 3.2157 3.6170 1.3911 10 7 5.3423 3.1000 1.0277 11 6 6.3321 2.1943 0.4287 12 6 7.2873 3.0151 -0.4434 13 6 7.8937 4.1437 0.3937 14 6 6.7795 5.0674 0.8911 15 1 6.2352 5.4735 0.0383 16 7 7.3653 6.1678 1.6681 17 6 6.3176 7.0215 2.2440 18 6 8.2942 6.9559 0.8470 19 6 9.0554 7.9127 1.7279 20 8 8.8452 7.9357 2.9222 21 7 9.9706 8.7423 1.1887 22 6 10.6635 9.6124 1.9901 23 1 10.4757 9.6335 3.0535 24 6 11.6066 10.4681 1.4342 25 7 11.8348 10.4429 0.1403 26 14 12.5502 11.6542 2.5261 27 1 13.3154 10.8889 3.5430 28 1 13.4898 12.4503 1.6962 29 1 11.5962 12.5659 3.2071 30 6 5.8184 4.2701 1.7780 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5138 0.8899 34 1 1.8934 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8899 36 1 2.7212 2.9428 -1.5343 37 1 3.0102 1.1860 -2.0158 38 1 6.8950 1.6952 1.2174 39 1 5.8229 1.4502 -0.1838 40 1 8.0834 2.3709 -0.8168 41 1 6.7385 3.4395 -1.2842 42 1 8.5925 4.7142 -0.2179 43 1 8.4215 3.7191 1.2475 44 1 5.6853 6.4265 2.9028 45 1 6.7787 7.8279 2.8144 46 1 5.7114 7.4436 1.4424 47 1 8.9945 6.2867 0.3471 48 1 7.7325 7.5176 0.1006 49 1 10.1391 8.7237 0.2336 50 1 12.4935 11.0399 -0.2477 51 1 6.3395 3.9405 2.6769 52 1 4.9718 4.8979 2.0559 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491952268.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:16 Heat of formation + Delta-G solvation = -64.814526 kcal Electronic energy + Delta-G solvation = -29628.417555 eV Core-core repulsion = 25627.674868 eV Total energy + Delta-G solvation = -4000.742687 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.60460 -40.50019 -39.32250 -37.90059 -36.95994 -35.84572 -33.49470 -33.29001 -32.92470 -31.43940 -29.48600 -27.52584 -26.48746 -25.68603 -24.78624 -24.14459 -22.94852 -21.64797 -21.20122 -20.84831 -19.88473 -19.75852 -18.57623 -17.79464 -17.31644 -16.66093 -16.49600 -16.25939 -16.17790 -15.79618 -15.61408 -15.47493 -15.33656 -15.13306 -15.04759 -14.66232 -14.18284 -14.10549 -13.89439 -13.72140 -13.46531 -13.35579 -13.30530 -13.05223 -12.98047 -12.75693 -12.68901 -12.43924 -12.36857 -12.18758 -12.12460 -11.94513 -11.86428 -11.76274 -11.46813 -11.43642 -11.24730 -10.92395 -10.78884 -10.29840 -10.00166 -9.72280 -9.30925 -8.46043 -5.94691 1.39706 1.41123 1.41745 1.52357 1.80969 2.04786 2.29018 2.74489 2.84412 3.20145 3.34294 3.40860 3.69520 3.74505 3.80611 3.87083 3.97280 4.06728 4.11733 4.18261 4.25560 4.28904 4.31563 4.45659 4.47970 4.50999 4.52635 4.54635 4.57741 4.66368 4.76574 4.78536 4.79771 4.93234 4.97345 4.99708 5.07413 5.10249 5.13872 5.16742 5.23695 5.30854 5.35441 5.41396 5.44348 5.50853 5.82625 6.02474 6.13872 6.36924 6.60971 7.09960 7.13267 7.56261 8.12404 8.71090 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.032873 B = 0.001908 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.555859 B =14668.279253 C =15024.230934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.126 4.126 4 H 0.087 0.913 5 C -0.133 4.133 6 C -0.191 4.191 7 H 0.156 0.844 8 C 0.535 3.465 9 O -0.593 6.593 10 N -0.604 5.604 11 C 0.100 3.900 12 C -0.124 4.124 13 C -0.118 4.118 14 C 0.079 3.921 15 H 0.036 0.964 16 N -0.525 5.525 17 C 0.026 3.974 18 C 0.057 3.943 19 C 0.442 3.558 20 O -0.613 6.613 21 N -0.573 5.573 22 C -0.334 4.334 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.920 5.920 26 Si 0.992 3.008 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 C 0.123 3.877 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.086 0.914 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.108 0.892 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.022 0.978 47 H 0.117 0.883 48 H 0.060 0.940 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.074 0.926 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.916 -24.737 -8.816 30.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.145 4.145 4 H 0.105 0.895 5 C -0.170 4.170 6 C -0.211 4.211 7 H 0.174 0.826 8 C 0.325 3.675 9 O -0.474 6.474 10 N -0.335 5.335 11 C -0.021 4.021 12 C -0.162 4.162 13 C -0.156 4.156 14 C -0.029 4.029 15 H 0.054 0.946 16 N -0.250 5.250 17 C -0.122 4.122 18 C -0.074 4.074 19 C 0.229 3.771 20 O -0.499 6.499 21 N -0.210 5.210 22 C -0.463 4.463 23 H 0.097 0.903 24 C -0.211 4.211 25 N -0.561 5.561 26 Si 0.816 3.184 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.199 1.199 30 C 0.000 4.000 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.063 0.937 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.155 0.845 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.126 0.874 41 H 0.086 0.914 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.040 0.960 47 H 0.135 0.865 48 H 0.078 0.922 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -15.061 -24.425 -7.492 29.658 hybrid contribution 0.208 1.790 -0.236 1.818 sum -14.853 -22.635 -7.728 28.154 Atomic orbital electron populations 1.21757 0.95296 1.02235 1.01630 1.21147 0.96179 0.92012 1.03183 1.22497 0.90861 0.99536 1.01618 0.89495 1.23194 1.00344 1.03169 0.90331 1.22372 0.98131 0.98141 1.02498 0.82650 1.20429 0.81515 0.86225 0.79325 1.90670 1.54787 1.50859 1.51131 1.48122 1.05896 1.26173 1.53337 1.22147 0.90167 0.91995 0.97764 1.21894 0.99606 0.97051 0.97671 1.21707 0.96656 0.96714 1.00517 1.21957 0.95566 0.91464 0.93951 0.94593 1.61562 1.17574 1.11251 1.34573 1.22427 0.93252 0.97633 0.98886 1.21791 0.96356 0.95569 0.93702 1.20683 0.83227 0.84051 0.89093 1.90465 1.69275 1.72626 1.17577 1.41905 1.35070 1.33607 1.10469 1.19622 1.18424 1.15438 0.92839 0.90339 1.26013 0.98016 0.99550 0.97568 1.69662 1.35196 1.39824 1.11378 0.84999 0.77870 0.77749 0.77765 1.19695 1.19431 1.19893 1.21411 0.97114 0.87313 0.94186 0.92535 0.91374 0.93717 0.89568 0.91213 0.89972 0.84511 0.89879 0.86473 0.87362 0.91448 0.91056 0.90989 0.90859 0.91930 0.95987 0.86508 0.92162 0.77050 0.91309 0.90758 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.87 71.98 0.71 -0.78 16 2 C -0.09 -0.82 6.22 30.59 0.19 -0.63 16 3 C -0.13 -1.85 5.25 -10.79 -0.06 -1.90 16 4 H 0.09 1.83 7.60 -2.38 -0.02 1.81 16 5 C -0.13 -1.56 9.88 30.60 0.30 -1.26 16 6 C -0.19 -2.71 4.69 -11.54 -0.05 -2.76 16 7 H 0.16 1.20 6.81 -2.39 -0.02 1.18 16 8 C 0.53 12.59 7.48 87.66 0.66 13.24 16 9 O -0.59 -19.77 15.67 -3.03 -0.05 -19.81 16 10 N -0.60 -12.50 2.97 -818.95 -2.43 -14.93 16 11 C 0.10 1.20 6.30 86.36 0.54 1.75 16 12 C -0.12 -1.56 6.08 30.67 0.19 -1.37 16 13 C -0.12 -2.39 5.00 30.62 0.15 -2.24 16 14 C 0.08 2.08 2.09 44.98 0.09 2.18 16 15 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 16 N -0.52 -17.88 4.37 -901.19 -3.94 -21.82 16 17 C 0.03 0.93 8.75 127.69 1.12 2.05 16 18 C 0.06 2.04 5.27 85.55 0.45 2.49 16 19 C 0.44 21.43 7.47 87.66 0.66 22.08 16 20 O -0.61 -34.37 13.91 -3.07 -0.04 -34.41 16 21 N -0.57 -29.72 5.29 -306.99 -1.62 -31.35 16 22 C -0.33 -19.11 9.68 84.04 0.81 -18.30 16 23 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 24 C -0.01 -0.63 5.50 84.92 0.47 -0.16 16 25 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 26 Si 0.99 43.23 29.55 68.60 2.03 45.26 16 27 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 28 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 29 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 30 C 0.12 3.23 5.15 86.35 0.44 3.67 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.09 0.47 7.88 -2.39 -0.02 0.45 16 35 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.14 0.74 8.03 -2.38 -0.02 0.72 16 38 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.12 0.72 5.67 -2.39 -0.01 0.71 16 40 H 0.11 0.84 8.14 -2.39 -0.02 0.83 16 41 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 1.47 6.14 -2.39 -0.01 1.45 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.07 2.42 6.36 -2.39 -0.02 2.41 16 45 H 0.06 2.70 5.83 -2.38 -0.01 2.69 16 46 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 47 H 0.12 3.61 5.81 -2.39 -0.01 3.60 16 48 H 0.06 2.01 8.12 -2.38 -0.02 1.99 16 49 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 50 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 51 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 52 H 0.07 2.16 5.56 -2.39 -0.01 2.15 16 Total: -1.00 -74.90 405.69 1.09 -73.82 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.19 Total: 34.61 kcal Atomic # 6 Polarization: 11.39 SS G_CDS: 6.67 Total: 18.07 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -7.71 Total: -117.52 kcal Atomic # 8 Polarization: -54.14 SS G_CDS: -0.09 Total: -54.23 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -74.90 1.09 -73.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491952268.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.001 kcal (2) G-P(sol) polarization free energy of solvation -74.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds