Wall clock time and date at job start Tue Mar 31 2020 19:57:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46818 * 2 1 4 4 H 1.09003 * 115.55168 * 29.32574 * 3 2 1 5 5 C 1.53076 * 117.49141 * 243.60088 * 3 2 1 6 6 C 1.52999 * 59.98430 * 252.51451 * 5 3 2 7 7 H 1.08998 * 117.49891 * 107.50004 * 6 5 3 8 8 C 1.50700 * 117.50019 * 252.50007 * 6 5 3 9 9 O 1.21284 * 120.00087 * 68.74293 * 8 6 5 10 10 N 1.34777 * 120.00178 * 248.75033 * 8 6 5 11 11 C 1.46929 * 120.62713 * 359.97438 * 10 8 6 12 12 C 1.53191 * 108.77491 * 233.61354 * 11 10 8 13 13 C 1.53044 * 109.31553 * 305.36642 * 12 11 10 14 14 C 1.53046 * 109.53426 * 61.36324 * 13 12 11 15 15 H 1.08998 * 109.49227 * 58.62643 * 14 13 12 16 16 N 1.46904 * 109.49357 * 178.68643 * 14 13 12 17 17 C 1.46897 * 111.00291 * 58.88900 * 16 14 13 18 18 C 1.46904 * 110.99658 * 294.93631 * 16 14 13 19 19 C 1.50706 * 109.46676 * 190.00170 * 18 16 14 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 16 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 16 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47118 * 269.99889 * 26 24 22 28 28 H 1.48499 * 109.47134 * 30.00409 * 26 24 22 29 29 H 1.48498 * 109.47011 * 150.00030 * 26 24 22 30 30 C 1.46933 * 120.60668 * 180.02562 * 10 8 6 31 31 H 1.09007 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47126 * 299.99775 * 1 2 3 33 33 H 1.09001 * 109.47509 * 60.00355 * 1 2 3 34 34 H 1.08994 * 109.47106 * 239.99551 * 2 1 3 35 35 H 1.09004 * 109.47009 * 119.99551 * 2 1 3 36 36 H 1.09006 * 117.51217 * 145.03725 * 5 3 2 37 37 H 1.09001 * 117.49615 * 359.97438 * 5 3 2 38 38 H 1.09001 * 109.58318 * 113.83105 * 11 10 8 39 39 H 1.08998 * 109.58862 * 353.40240 * 11 10 8 40 40 H 1.08996 * 109.49765 * 185.41534 * 12 11 10 41 41 H 1.08996 * 109.49879 * 65.31684 * 12 11 10 42 42 H 1.09004 * 109.45826 * 301.35096 * 13 12 11 43 43 H 1.08998 * 109.45042 * 181.37703 * 13 12 11 44 44 H 1.09002 * 109.47227 * 296.04824 * 17 16 14 45 45 H 1.09008 * 109.46433 * 56.04491 * 17 16 14 46 46 H 1.08993 * 109.47054 * 176.04090 * 17 16 14 47 47 H 1.08996 * 109.47230 * 70.00717 * 18 16 14 48 48 H 1.09002 * 109.47146 * 309.99949 * 18 16 14 49 49 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 50 50 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 51 51 H 1.09001 * 109.61581 * 6.61049 * 30 10 8 52 52 H 1.09007 * 109.55457 * 246.18905 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8447 1.9075 -1.2163 6 6 3.5501 1.6580 0.1182 7 1 4.1802 0.7720 0.1965 8 6 4.0227 2.8621 0.8914 9 8 3.2157 3.6160 1.3927 10 7 5.3423 3.1014 1.0256 11 6 6.3320 2.1971 0.4243 12 6 7.3154 1.7500 1.5105 13 6 7.9194 2.9837 2.1853 14 6 6.8075 3.8010 2.8471 15 1 6.2866 3.1820 3.5775 16 7 7.3919 4.9681 3.5212 17 6 8.1246 5.8138 2.5694 18 6 8.2582 4.5546 4.6332 19 6 8.6408 5.7633 5.4481 20 8 8.2316 6.8609 5.1338 21 7 9.4368 5.6242 6.5268 22 6 9.7852 6.7238 7.2678 23 1 9.4216 7.7013 6.9874 24 6 10.6063 6.5805 8.3796 25 7 11.0492 5.3912 8.7205 26 14 11.0805 8.0786 9.3897 27 1 12.3337 8.6638 8.8489 28 1 9.9928 9.0872 9.3199 29 1 11.2920 7.6758 10.8032 30 6 5.8178 4.2711 1.7770 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.7225 2.9427 -1.5351 37 1 3.0109 1.1855 -2.0158 38 1 6.8723 2.7197 -0.3651 39 1 5.8258 1.3259 0.0086 40 1 8.1103 1.1562 1.0595 41 1 6.7892 1.1502 2.2531 42 1 8.4243 3.5958 1.4379 43 1 8.6378 2.6683 2.9420 44 1 8.9703 5.2574 2.1653 45 1 7.4598 6.1056 1.7563 46 1 8.4871 6.7057 3.0802 47 1 9.1580 4.0839 4.2372 48 1 7.7245 3.8446 5.2650 49 1 9.7637 4.7463 6.7784 50 1 10.8026 4.6132 8.1961 51 1 4.9729 4.7679 2.2538 52 1 6.3157 4.9633 1.0978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001491952270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:20 Heat of formation + Delta-G solvation = -40.840295 kcal Electronic energy + Delta-G solvation = -29666.520135 eV Core-core repulsion = 25666.817048 eV Total energy + Delta-G solvation = -3999.703086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.76456 -39.28056 -38.12315 -37.10679 -35.80734 -34.19920 -32.54325 -32.35089 -31.13597 -30.35808 -27.84377 -26.33328 -25.41206 -24.44487 -24.09259 -23.26923 -22.38548 -20.95029 -20.04740 -19.36798 -19.01905 -17.86726 -17.64161 -16.49366 -16.39022 -15.63866 -15.48937 -15.00620 -14.96648 -14.73600 -14.53211 -14.48490 -14.28800 -14.01440 -13.77867 -13.50876 -13.33279 -13.06200 -12.93502 -12.73807 -12.62618 -12.49872 -12.21516 -11.77553 -11.70081 -11.46560 -11.40700 -11.23067 -11.16500 -11.08778 -11.00442 -10.85016 -10.80205 -10.65663 -10.35214 -10.20709 -9.93334 -9.84476 -9.49840 -8.88572 -8.46625 -8.02399 -7.86775 -6.73837 -3.86739 2.26264 2.65570 3.31776 3.36486 3.44139 3.55714 3.85729 3.95564 4.05645 4.30856 4.34714 4.35868 4.48866 4.59472 4.64199 4.70561 4.79762 4.82856 4.93977 4.97048 5.03130 5.07389 5.17856 5.23843 5.25731 5.26724 5.38471 5.44606 5.50352 5.51153 5.59453 5.59675 5.63907 5.70386 5.72748 5.76087 5.77818 5.81784 5.87418 5.99904 6.00856 6.05457 6.11514 6.27316 6.51449 7.13267 7.21110 7.32002 7.83160 7.99039 8.10118 8.62139 8.82596 9.49534 9.90698 10.69717 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.001944 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.767431 B =14399.464174 C =14598.720924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.192 4.192 7 H 0.124 0.876 8 C 0.544 3.456 9 O -0.537 6.537 10 N -0.607 5.607 11 C 0.107 3.893 12 C -0.131 4.131 13 C -0.158 4.158 14 C 0.073 3.927 15 H 0.084 0.916 16 N -0.508 5.508 17 C 0.015 3.985 18 C 0.047 3.953 19 C 0.447 3.553 20 O -0.570 6.570 21 N -0.577 5.577 22 C -0.380 4.380 23 H 0.099 0.901 24 C -0.010 4.010 25 N -0.903 5.903 26 Si 1.094 2.906 27 H -0.285 1.285 28 H -0.283 1.283 29 H -0.281 1.281 30 C 0.119 3.881 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.019 0.981 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.375 0.625 50 H 0.261 0.739 51 H 0.102 0.898 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.858 -15.099 -21.473 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.132 4.132 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.213 4.213 7 H 0.142 0.858 8 C 0.332 3.668 9 O -0.414 6.414 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.170 4.170 13 C -0.197 4.197 14 C -0.037 4.037 15 H 0.102 0.898 16 N -0.231 5.231 17 C -0.133 4.133 18 C -0.084 4.084 19 C 0.233 3.767 20 O -0.453 6.453 21 N -0.215 5.215 22 C -0.510 4.510 23 H 0.117 0.883 24 C -0.213 4.213 25 N -0.542 5.542 26 Si 0.920 3.080 27 H -0.212 1.212 28 H -0.209 1.209 29 H -0.207 1.207 30 C -0.003 4.003 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.037 0.963 45 H 0.081 0.919 46 H 0.115 0.885 47 H 0.067 0.933 48 H 0.104 0.896 49 H 0.208 0.792 50 H 0.072 0.928 51 H 0.120 0.880 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -12.084 -13.113 -19.858 26.689 hybrid contribution 0.321 -1.716 -1.511 2.308 sum -11.763 -14.829 -21.369 28.547 Atomic orbital electron populations 1.21743 0.95085 1.01681 1.02242 1.21155 0.96394 0.93539 1.02113 1.22517 0.91366 0.98811 1.00926 0.86355 1.23114 1.02040 1.03188 0.90202 1.22333 0.97719 0.98997 1.02264 0.85818 1.19659 0.81721 0.85554 0.79830 1.90714 1.53355 1.48754 1.48560 1.48006 1.05359 1.27123 1.53536 1.21805 0.90510 0.93735 0.95579 1.21875 0.98716 0.97992 0.98379 1.22295 0.99371 0.97202 1.00865 1.22075 0.94714 0.91427 0.95493 0.89807 1.61720 1.35252 1.16703 1.09392 1.22652 0.96000 0.98984 0.95624 1.21861 0.95822 0.97206 0.93530 1.19654 0.83542 0.89987 0.83549 1.90491 1.57038 1.27111 1.70634 1.41937 1.44466 1.09820 1.25315 1.20565 1.31183 0.89476 1.09748 0.88275 1.26499 0.94616 1.03727 0.96415 1.70874 1.44032 0.98682 1.40622 0.83091 0.76372 0.72799 0.75767 1.21164 1.20917 1.20666 1.21649 0.98813 0.86607 0.93225 0.92592 0.92398 0.92510 0.91686 0.91382 0.88279 0.87803 0.91206 0.89499 0.90580 0.91328 0.91180 0.91202 0.96279 0.91925 0.88498 0.93345 0.89574 0.79242 0.92788 0.88017 0.91003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.87 37.16 0.37 -0.49 16 2 C -0.09 -0.57 6.22 -26.73 -0.17 -0.73 16 3 C -0.12 -0.94 5.25 -90.58 -0.48 -1.41 16 4 H 0.12 1.19 7.60 -51.93 -0.39 0.80 16 5 C -0.15 -1.01 9.88 -26.69 -0.26 -1.28 16 6 C -0.19 -1.58 4.84 -91.77 -0.44 -2.03 16 7 H 0.12 0.76 6.57 -51.93 -0.34 0.42 16 8 C 0.54 6.55 7.48 -10.98 -0.08 6.47 16 9 O -0.54 -8.70 15.67 5.55 0.09 -8.62 16 10 N -0.61 -6.52 2.97 -172.78 -0.51 -7.04 16 11 C 0.11 0.78 6.35 -3.71 -0.02 0.76 16 12 C -0.13 -1.01 6.08 -26.61 -0.16 -1.17 16 13 C -0.16 -1.64 4.46 -26.68 -0.12 -1.76 16 14 C 0.07 0.95 2.37 -67.61 -0.16 0.79 16 15 H 0.08 1.16 8.03 -51.93 -0.42 0.74 16 16 N -0.51 -8.46 4.49 -236.20 -1.06 -9.52 16 17 C 0.01 0.24 8.41 60.06 0.51 0.74 16 18 C 0.05 0.84 4.89 -4.97 -0.02 0.82 16 19 C 0.45 10.62 7.51 -10.98 -0.08 10.54 16 20 O -0.57 -15.54 13.89 5.55 0.08 -15.46 16 21 N -0.58 -14.61 5.28 -10.96 -0.06 -14.67 16 22 C -0.38 -10.77 9.68 -14.93 -0.14 -10.91 16 23 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 24 C -0.01 -0.28 5.50 -17.47 -0.10 -0.38 16 25 N -0.90 -25.43 13.68 55.50 0.76 -24.67 16 26 Si 1.09 24.55 29.92 -169.99 -5.09 19.46 16 27 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 29 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 30 C 0.12 1.53 5.65 -3.73 -0.02 1.51 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.06 0.31 7.88 -51.93 -0.41 -0.10 16 35 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.10 0.49 8.03 -51.93 -0.42 0.07 16 38 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.46 5.51 -51.93 -0.29 0.18 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.73 6.55 -51.93 -0.34 0.39 16 43 H 0.07 0.76 6.69 -51.93 -0.35 0.41 16 44 H 0.02 0.27 6.54 -51.93 -0.34 -0.07 16 45 H 0.06 0.88 6.03 -51.92 -0.31 0.56 16 46 H 0.10 1.91 5.88 -51.93 -0.31 1.61 16 47 H 0.05 0.77 6.91 -51.93 -0.36 0.42 16 48 H 0.09 1.42 8.00 -51.93 -0.42 1.00 16 49 H 0.37 8.76 6.73 -40.82 -0.27 8.49 16 50 H 0.26 7.06 6.78 -40.82 -0.28 6.78 16 51 H 0.10 1.59 7.01 -51.93 -0.36 1.22 16 52 H 0.07 0.88 6.10 -51.92 -0.32 0.56 16 LS Contribution 400.80 15.07 6.04 6.04 Total: -1.00 -34.42 400.80 -9.62 -44.04 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.47 Total: 8.95 kcal Atomic # 6 Polarization: 2.87 SS G_CDS: -1.39 Total: 1.47 kcal Atomic # 7 Polarization: -55.01 SS G_CDS: -0.87 Total: -55.89 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: 0.16 Total: -24.08 kcal Atomic # 14 Polarization: 24.55 SS G_CDS: -5.09 Total: 19.46 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.42 -9.62 -44.04 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491952270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.196 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds