Wall clock time and date at job start Tue Mar 31 2020 19:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46818 * 2 1 4 4 H 1.09003 * 115.55168 * 29.32574 * 3 2 1 5 5 C 1.53076 * 117.49141 * 243.60088 * 3 2 1 6 6 C 1.52999 * 59.98430 * 252.51451 * 5 3 2 7 7 H 1.08998 * 117.49891 * 107.50004 * 6 5 3 8 8 C 1.50700 * 117.50019 * 252.50007 * 6 5 3 9 9 O 1.21284 * 120.00087 * 68.74293 * 8 6 5 10 10 N 1.34777 * 120.00178 * 248.75033 * 8 6 5 11 11 C 1.46929 * 120.62713 * 359.97438 * 10 8 6 12 12 C 1.53191 * 108.77491 * 233.61354 * 11 10 8 13 13 C 1.53044 * 109.31553 * 305.36642 * 12 11 10 14 14 C 1.53046 * 109.53426 * 61.36324 * 13 12 11 15 15 H 1.08998 * 109.49227 * 58.62643 * 14 13 12 16 16 N 1.46904 * 109.49357 * 178.68643 * 14 13 12 17 17 C 1.46897 * 111.00291 * 58.88900 * 16 14 13 18 18 C 1.46904 * 110.99658 * 294.93631 * 16 14 13 19 19 C 1.50706 * 109.46676 * 190.00170 * 18 16 14 20 20 O 1.21288 * 120.00284 * 0.02562 * 19 18 16 21 21 N 1.34777 * 119.99730 * 179.97438 * 19 18 16 22 22 C 1.37095 * 119.99910 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99959 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00053 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99930 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99918 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47118 * 269.99889 * 26 24 22 28 28 H 1.48499 * 109.47134 * 30.00409 * 26 24 22 29 29 H 1.48498 * 109.47011 * 150.00030 * 26 24 22 30 30 C 1.46933 * 120.60668 * 180.02562 * 10 8 6 31 31 H 1.09007 * 109.46979 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47126 * 299.99775 * 1 2 3 33 33 H 1.09001 * 109.47509 * 60.00355 * 1 2 3 34 34 H 1.08994 * 109.47106 * 239.99551 * 2 1 3 35 35 H 1.09004 * 109.47009 * 119.99551 * 2 1 3 36 36 H 1.09006 * 117.51217 * 145.03725 * 5 3 2 37 37 H 1.09001 * 117.49615 * 359.97438 * 5 3 2 38 38 H 1.09001 * 109.58318 * 113.83105 * 11 10 8 39 39 H 1.08998 * 109.58862 * 353.40240 * 11 10 8 40 40 H 1.08996 * 109.49765 * 185.41534 * 12 11 10 41 41 H 1.08996 * 109.49879 * 65.31684 * 12 11 10 42 42 H 1.09004 * 109.45826 * 301.35096 * 13 12 11 43 43 H 1.08998 * 109.45042 * 181.37703 * 13 12 11 44 44 H 1.09002 * 109.47227 * 296.04824 * 17 16 14 45 45 H 1.09008 * 109.46433 * 56.04491 * 17 16 14 46 46 H 1.08993 * 109.47054 * 176.04090 * 17 16 14 47 47 H 1.08996 * 109.47230 * 70.00717 * 18 16 14 48 48 H 1.09002 * 109.47146 * 309.99949 * 18 16 14 49 49 H 0.96996 * 119.99887 * 0.02562 * 21 19 18 50 50 H 0.97001 * 119.99781 * 359.97438 * 25 24 22 51 51 H 1.09001 * 109.61581 * 6.61049 * 30 10 8 52 52 H 1.09007 * 109.55457 * 246.18905 * 30 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3883 2.1716 0.4817 5 6 2.8447 1.9075 -1.2163 6 6 3.5501 1.6580 0.1182 7 1 4.1802 0.7720 0.1965 8 6 4.0227 2.8621 0.8914 9 8 3.2157 3.6160 1.3927 10 7 5.3423 3.1014 1.0256 11 6 6.3320 2.1971 0.4243 12 6 7.3154 1.7500 1.5105 13 6 7.9194 2.9837 2.1853 14 6 6.8075 3.8010 2.8471 15 1 6.2866 3.1820 3.5775 16 7 7.3919 4.9681 3.5212 17 6 8.1246 5.8138 2.5694 18 6 8.2582 4.5546 4.6332 19 6 8.6408 5.7633 5.4481 20 8 8.2316 6.8609 5.1338 21 7 9.4368 5.6242 6.5268 22 6 9.7852 6.7238 7.2678 23 1 9.4216 7.7013 6.9874 24 6 10.6063 6.5805 8.3796 25 7 11.0492 5.3912 8.7205 26 14 11.0805 8.0786 9.3897 27 1 12.3337 8.6638 8.8489 28 1 9.9928 9.0872 9.3199 29 1 11.2920 7.6758 10.8032 30 6 5.8178 4.2711 1.7770 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.7225 2.9427 -1.5351 37 1 3.0109 1.1855 -2.0158 38 1 6.8723 2.7197 -0.3651 39 1 5.8258 1.3259 0.0086 40 1 8.1103 1.1562 1.0595 41 1 6.7892 1.1502 2.2531 42 1 8.4243 3.5958 1.4379 43 1 8.6378 2.6683 2.9420 44 1 8.9703 5.2574 2.1653 45 1 7.4598 6.1056 1.7563 46 1 8.4871 6.7057 3.0802 47 1 9.1580 4.0839 4.2372 48 1 7.7245 3.8446 5.2650 49 1 9.7637 4.7463 6.7784 50 1 10.8026 4.6132 8.1961 51 1 4.9729 4.7679 2.2538 52 1 6.3157 4.9633 1.0978 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001491952270.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:19 Heat of formation + Delta-G solvation = -64.460635 kcal Electronic energy + Delta-G solvation = -29667.544389 eV Core-core repulsion = 25666.817048 eV Total energy + Delta-G solvation = -4000.727341 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.67710 -40.65744 -39.50831 -37.95766 -37.00494 -36.18507 -33.33998 -33.17373 -32.92679 -31.44969 -29.27987 -27.34035 -26.73376 -25.83571 -24.80128 -24.19590 -23.25904 -21.70669 -21.37935 -20.71494 -19.94030 -19.82781 -18.53163 -18.10125 -17.39203 -16.88631 -16.67100 -16.25832 -16.16713 -15.66216 -15.59734 -15.50016 -15.36385 -15.22420 -15.15275 -14.73438 -14.31805 -14.20286 -14.05017 -13.52742 -13.42545 -13.36234 -13.31279 -13.02017 -12.98614 -12.73454 -12.64914 -12.24957 -12.20331 -11.96221 -11.95375 -11.90780 -11.88165 -11.84704 -11.80932 -11.48221 -11.26281 -10.93352 -10.79808 -10.40177 -10.10236 -9.73853 -9.19794 -8.93333 -6.06867 1.40236 1.50895 1.54031 1.79132 1.81860 1.99887 2.38748 2.69686 2.83592 3.15429 3.25098 3.38663 3.68728 3.71373 3.72401 3.84841 3.92549 3.98785 4.03215 4.12302 4.16084 4.25267 4.27435 4.33134 4.43979 4.48813 4.50230 4.53846 4.56144 4.60508 4.72311 4.77092 4.78574 4.86064 4.92792 4.97957 5.02947 5.09266 5.15486 5.15574 5.22775 5.29548 5.30665 5.40389 5.49489 5.58846 5.87533 5.96691 6.10813 6.34820 6.57535 6.75159 7.09894 7.43739 7.93313 8.54501 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.024013 B = 0.001944 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.767431 B =14399.464174 C =14598.720924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.129 4.129 4 H 0.086 0.914 5 C -0.130 4.130 6 C -0.192 4.192 7 H 0.156 0.844 8 C 0.534 3.466 9 O -0.593 6.593 10 N -0.603 5.603 11 C 0.102 3.898 12 C -0.124 4.124 13 C -0.153 4.153 14 C 0.080 3.920 15 H 0.074 0.926 16 N -0.534 5.534 17 C 0.023 3.977 18 C 0.063 3.937 19 C 0.444 3.556 20 O -0.609 6.609 21 N -0.587 5.587 22 C -0.408 4.408 23 H 0.072 0.928 24 C -0.042 4.042 25 N -0.917 5.917 26 Si 1.135 2.865 27 H -0.269 1.269 28 H -0.280 1.280 29 H -0.272 1.272 30 C 0.125 3.875 31 H 0.067 0.933 32 H 0.042 0.958 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.084 0.916 37 H 0.138 0.862 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.066 0.934 42 H 0.074 0.926 43 H 0.068 0.932 44 H 0.041 0.959 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.076 0.924 48 H 0.102 0.898 49 H 0.384 0.616 50 H 0.259 0.741 51 H 0.063 0.937 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.895 -18.013 -23.627 31.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.148 4.148 4 H 0.104 0.896 5 C -0.168 4.168 6 C -0.212 4.212 7 H 0.173 0.827 8 C 0.324 3.676 9 O -0.474 6.474 10 N -0.335 5.335 11 C -0.019 4.019 12 C -0.163 4.163 13 C -0.192 4.192 14 C -0.029 4.029 15 H 0.092 0.908 16 N -0.258 5.258 17 C -0.124 4.124 18 C -0.068 4.068 19 C 0.232 3.768 20 O -0.494 6.494 21 N -0.227 5.227 22 C -0.538 4.538 23 H 0.090 0.910 24 C -0.241 4.241 25 N -0.556 5.556 26 Si 0.955 3.045 27 H -0.194 1.194 28 H -0.205 1.205 29 H -0.197 1.197 30 C 0.001 3.999 31 H 0.086 0.914 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.103 0.897 37 H 0.156 0.844 38 H 0.103 0.897 39 H 0.134 0.866 40 H 0.123 0.877 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.087 0.913 44 H 0.059 0.941 45 H 0.096 0.904 46 H 0.073 0.927 47 H 0.093 0.907 48 H 0.120 0.880 49 H 0.218 0.782 50 H 0.070 0.930 51 H 0.082 0.918 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.095 -16.088 -22.049 29.463 hybrid contribution -0.061 -0.786 -0.904 1.200 sum -11.157 -16.873 -22.954 30.595 Atomic orbital electron populations 1.21758 0.95304 1.02231 1.01633 1.21146 0.96193 0.92054 1.03138 1.22507 0.90917 0.99504 1.01831 0.89601 1.23214 1.00066 1.03284 0.90193 1.22379 0.98108 0.98081 1.02644 0.82699 1.20442 0.81624 0.86112 0.79422 1.90690 1.54850 1.50902 1.50975 1.48120 1.05834 1.26795 1.52769 1.22135 0.89957 0.94178 0.95649 1.21867 0.99384 0.96739 0.98272 1.22242 0.98082 0.98003 1.00897 1.22011 0.95430 0.90260 0.95187 0.90805 1.61605 1.35355 1.18842 1.09998 1.22493 0.97058 0.97548 0.95335 1.21692 0.97407 0.94226 0.93522 1.20771 0.81738 0.91347 0.82935 1.90474 1.57995 1.29458 1.71467 1.41979 1.45294 1.09566 1.25849 1.20527 1.32529 0.89514 1.11191 0.91027 1.27803 0.93834 1.05584 0.96834 1.70941 1.44636 0.99066 1.40982 0.82594 0.76822 0.70147 0.74895 1.19433 1.20534 1.19720 1.21399 0.97346 0.87711 0.93426 0.91390 0.93852 0.92388 0.89448 0.91406 0.89721 0.84441 0.89747 0.86579 0.87693 0.91532 0.90724 0.91311 0.94069 0.90368 0.92742 0.90662 0.87959 0.78194 0.92976 0.91793 0.90435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 9.87 71.98 0.71 -0.86 16 2 C -0.09 -0.86 6.22 30.59 0.19 -0.67 16 3 C -0.13 -1.92 5.25 -10.77 -0.06 -1.98 16 4 H 0.09 1.86 7.60 -2.39 -0.02 1.84 16 5 C -0.13 -1.46 9.88 30.62 0.30 -1.16 16 6 C -0.19 -2.72 4.84 -11.54 -0.06 -2.78 16 7 H 0.16 1.20 6.57 -2.39 -0.02 1.19 16 8 C 0.53 12.66 7.48 87.66 0.66 13.31 16 9 O -0.59 -20.37 15.67 -3.04 -0.05 -20.42 16 10 N -0.60 -12.12 2.97 -818.95 -2.43 -14.55 16 11 C 0.10 1.10 6.35 86.36 0.55 1.65 16 12 C -0.12 -1.39 6.08 30.67 0.19 -1.21 16 13 C -0.15 -2.71 4.46 30.62 0.14 -2.58 16 14 C 0.08 2.02 2.37 44.98 0.11 2.12 16 15 H 0.07 2.00 8.03 -2.39 -0.02 1.98 16 16 N -0.53 -17.74 4.49 -901.20 -4.05 -21.78 16 17 C 0.02 0.74 8.41 127.69 1.07 1.81 16 18 C 0.06 2.19 4.89 85.56 0.42 2.61 16 19 C 0.44 21.59 7.51 87.66 0.66 22.24 16 20 O -0.61 -34.58 13.89 -3.05 -0.04 -34.63 16 21 N -0.59 -30.35 5.28 -306.98 -1.62 -31.97 16 22 C -0.41 -23.73 9.68 84.04 0.81 -22.92 16 23 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 24 C -0.04 -2.33 5.50 84.93 0.47 -1.87 16 25 N -0.92 -51.54 13.68 21.66 0.30 -51.25 16 26 Si 1.14 49.39 29.92 68.60 2.05 51.45 16 27 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 28 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 29 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 30 C 0.12 3.19 5.65 86.35 0.49 3.68 16 31 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.04 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.09 0.49 7.88 -2.39 -0.02 0.47 16 35 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 36 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.14 0.65 8.03 -2.39 -0.02 0.63 16 38 H 0.08 0.74 8.14 -2.39 -0.02 0.73 16 39 H 0.12 0.62 5.51 -2.39 -0.01 0.61 16 40 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.07 1.29 6.55 -2.38 -0.02 1.27 16 43 H 0.07 1.27 6.69 -2.39 -0.02 1.25 16 44 H 0.04 1.10 6.54 -2.39 -0.02 1.09 16 45 H 0.08 2.18 6.03 -2.38 -0.01 2.16 16 46 H 0.05 2.22 5.88 -2.39 -0.01 2.21 16 47 H 0.08 2.26 6.91 -2.39 -0.02 2.24 16 48 H 0.10 3.26 8.00 -2.39 -0.02 3.24 16 49 H 0.38 18.13 6.73 -92.71 -0.62 17.51 16 50 H 0.26 14.08 6.78 -92.71 -0.63 13.45 16 51 H 0.06 2.13 7.01 -2.39 -0.02 2.11 16 52 H 0.08 1.86 6.10 -2.38 -0.01 1.85 16 Total: -1.00 -79.88 400.80 1.25 -78.63 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.45 Total: 33.10 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.64 Total: 11.42 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -7.81 Total: -119.55 kcal Atomic # 8 Polarization: -54.95 SS G_CDS: -0.09 Total: -55.04 kcal Atomic # 14 Polarization: 49.39 SS G_CDS: 2.05 Total: 51.45 kcal Total: -79.88 1.25 -78.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001491952270.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.173 kcal (2) G-P(sol) polarization free energy of solvation -79.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds