Wall clock time and date at job start Tue Mar 31 2020 20:25:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 119.99960 * 2 1 4 4 H 1.09005 * 109.47141 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47511 * 119.99594 * 3 2 1 6 6 C 1.52995 * 109.47396 * 293.50040 * 5 3 2 7 7 C 1.53003 * 109.47363 * 239.99852 * 3 2 1 8 8 C 1.50699 * 109.46577 * 63.70252 * 7 3 2 9 9 O 1.21278 * 120.00688 * 358.18793 * 8 7 3 10 10 N 1.34781 * 119.99561 * 178.18594 * 8 7 3 11 11 C 1.46500 * 119.99785 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.47011 * 179.97438 * 11 10 8 13 13 H 1.08992 * 110.64329 * 54.29660 * 12 11 10 14 14 C 1.54597 * 110.72125 * 291.14652 * 12 11 10 15 15 C 1.53997 * 105.14027 * 219.68307 * 14 12 11 16 16 N 1.47904 * 107.05629 * 358.77975 * 15 14 12 17 17 C 1.46889 * 110.99968 * 145.84420 * 16 15 14 18 18 C 1.50705 * 109.47007 * 183.40440 * 17 16 15 19 19 O 1.21293 * 120.00077 * 353.28445 * 18 17 16 20 20 N 1.34782 * 119.99949 * 173.28102 * 18 17 16 21 21 C 1.37094 * 119.99915 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99872 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99821 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99809 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00168 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46924 * 90.00203 * 25 23 21 27 27 H 1.48502 * 109.47023 * 210.00590 * 25 23 21 28 28 H 1.48505 * 109.47043 * 330.00620 * 25 23 21 29 29 C 1.48731 * 105.94345 * 25.19792 * 16 15 14 30 30 H 1.08004 * 120.00693 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00030 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00340 * 179.97438 * 2 1 3 33 33 H 1.09009 * 109.46793 * 53.49349 * 5 3 2 34 34 H 1.08998 * 109.47671 * 173.49228 * 5 3 2 35 35 H 1.09003 * 109.46906 * 295.79816 * 6 5 3 36 36 H 1.09002 * 109.47265 * 55.79836 * 6 5 3 37 37 H 1.09000 * 109.47681 * 175.79849 * 6 5 3 38 38 H 1.08996 * 109.46755 * 303.71037 * 7 3 2 39 39 H 1.08993 * 109.47078 * 183.70429 * 7 3 2 40 40 H 0.96999 * 119.99998 * 0.02562 * 10 8 7 41 41 H 1.08993 * 109.47612 * 299.99616 * 11 10 8 42 42 H 1.09004 * 109.47258 * 60.00452 * 11 10 8 43 43 H 1.09004 * 110.31421 * 338.60229 * 14 12 11 44 44 H 1.09007 * 110.31059 * 100.67163 * 14 12 11 45 45 H 1.08999 * 109.91672 * 118.12976 * 15 14 12 46 46 H 1.09001 * 109.91902 * 239.23134 * 15 14 12 47 47 H 1.08996 * 109.47210 * 303.40367 * 17 16 15 48 48 H 1.09005 * 109.47177 * 63.40580 * 17 16 15 49 49 H 0.97005 * 119.99757 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00102 * 179.97438 * 24 23 21 51 51 H 1.09000 * 110.83985 * 202.57653 * 29 16 15 52 52 H 1.09003 * 110.58422 * 79.38540 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 1.2493 6 6 2.0560 1.4686 2.4931 7 6 2.9431 1.3862 -1.2492 8 6 2.0706 1.3979 -2.4779 9 8 0.8659 1.3134 -2.3672 10 7 2.6293 1.5025 -3.7000 11 6 1.7812 1.5144 -4.8945 12 6 2.6584 1.6416 -6.1416 13 1 3.4185 0.8607 -6.1580 14 6 3.3107 3.0415 -6.2112 15 6 3.2538 3.4384 -7.6980 16 7 2.6327 2.3098 -8.4248 17 6 1.8187 2.7917 -9.5486 18 6 1.1367 1.6230 -10.2122 19 8 1.4046 0.4905 -9.8705 20 7 0.2290 1.8364 -11.1855 21 6 -0.3918 0.7733 -11.7888 22 1 -0.1532 -0.2351 -11.4845 23 6 -1.3272 0.9933 -12.7925 24 7 -1.9226 -0.0257 -13.3705 25 14 -1.7393 2.7374 -13.3193 26 1 -0.8303 3.1503 -14.4186 27 1 -3.1457 2.7922 -13.7928 28 1 -1.5694 3.6563 -12.1651 29 6 1.7945 1.5931 -7.4269 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5715 0.4977 1.3094 34 1 3.5732 2.2738 1.1930 35 1 1.4817 2.3948 2.4692 36 1 1.3739 0.6185 2.5099 37 1 2.6803 1.4512 3.3865 38 1 3.6066 0.5221 -1.2830 39 1 3.5371 2.2994 -1.2166 40 1 3.5929 1.5697 -3.7887 41 1 1.2105 0.5871 -4.9443 42 1 1.0958 2.3607 -4.8450 43 1 2.7460 3.7525 -5.6080 44 1 4.3449 2.9944 -5.8700 45 1 2.6484 4.3366 -7.8197 46 1 4.2615 3.6162 -8.0737 47 1 1.0670 3.4895 -9.1799 48 1 2.4598 3.2965 -10.2714 49 1 0.0150 2.7421 -11.4590 50 1 -2.5758 0.1278 -14.0709 51 1 1.6212 0.5620 -7.7351 52 1 0.8494 2.1144 -7.2751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001493228423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:30 Heat of formation + Delta-G solvation = -58.059921 kcal Electronic energy + Delta-G solvation = -28781.025942 eV Core-core repulsion = 24780.576157 eV Total energy + Delta-G solvation = -4000.449785 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.17155 -39.31688 -37.85969 -37.00479 -35.03268 -33.95501 -32.27738 -31.98400 -31.63251 -30.68628 -29.31222 -27.25316 -25.76481 -24.33573 -23.67417 -21.93607 -21.29649 -20.47478 -20.29672 -19.72207 -19.36497 -18.28584 -17.16996 -16.62412 -16.06183 -15.85932 -15.40118 -15.25681 -15.00720 -14.83891 -14.75213 -14.48477 -14.17393 -13.85597 -13.63533 -13.54840 -13.22657 -12.97388 -12.81766 -12.53631 -12.48429 -12.34838 -12.11147 -11.92364 -11.78961 -11.65381 -11.51265 -11.35070 -11.14970 -11.11387 -11.08597 -10.85674 -10.76740 -10.63840 -10.59775 -10.03411 -9.97823 -9.54923 -9.31433 -9.13071 -8.55038 -8.19741 -8.07530 -6.31324 -3.82658 2.27983 2.54511 2.99714 3.02189 3.06550 3.14831 3.72995 3.98967 4.10140 4.38369 4.43959 4.46817 4.51601 4.67167 4.70869 4.87839 4.92066 4.94249 5.07185 5.13941 5.15358 5.18146 5.21378 5.28709 5.35640 5.41116 5.52131 5.56936 5.58363 5.62682 5.66496 5.68019 5.72796 5.77175 5.79092 5.82800 5.90120 5.91346 5.98931 6.03180 6.17012 6.31804 6.46866 6.57551 6.76753 7.07569 7.13306 7.34149 7.58067 8.10766 8.14144 8.59715 8.94898 9.42080 9.82591 10.81761 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.001823 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.001900 B =15352.633959 C =16185.756905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.154 4.154 3 C -0.044 4.044 4 H 0.080 0.920 5 C -0.116 4.116 6 C -0.152 4.152 7 C -0.135 4.135 8 C 0.507 3.493 9 O -0.530 6.530 10 N -0.731 5.731 11 C 0.129 3.871 12 C -0.105 4.105 13 H 0.090 0.910 14 C -0.125 4.125 15 C 0.034 3.966 16 N -0.494 5.494 17 C 0.035 3.965 18 C 0.451 3.549 19 O -0.560 6.560 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.881 5.881 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.048 3.952 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.052 0.948 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.399 0.601 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.048 0.952 48 H 0.092 0.908 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.110 0.890 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.378 8.936 26.470 30.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.173 4.173 3 C -0.063 4.063 4 H 0.098 0.902 5 C -0.154 4.154 6 C -0.209 4.209 7 C -0.175 4.175 8 C 0.293 3.707 9 O -0.406 6.406 10 N -0.384 5.384 11 C 0.006 3.994 12 C -0.125 4.125 13 H 0.108 0.892 14 C -0.163 4.163 15 C -0.095 4.095 16 N -0.218 5.218 17 C -0.097 4.097 18 C 0.237 3.763 19 O -0.442 6.442 20 N -0.230 5.230 21 C -0.433 4.433 22 H 0.138 0.862 23 C -0.161 4.161 24 N -0.521 5.521 25 Si 0.706 3.294 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.079 4.079 30 H 0.113 0.887 31 H 0.108 0.892 32 H 0.119 0.881 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.071 0.929 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.232 0.768 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.060 0.940 46 H 0.096 0.904 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.128 0.872 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 11.897 7.682 26.369 29.931 hybrid contribution -0.617 1.981 -0.576 2.153 sum 11.281 9.663 25.793 29.764 Atomic orbital electron populations 1.23694 0.95930 1.01334 0.98741 1.22590 0.95989 0.96957 1.01715 1.20147 0.96527 0.97155 0.92430 0.90203 1.21543 0.97848 1.01913 0.94063 1.21766 0.99919 1.02146 0.97116 1.21721 0.98734 1.04245 0.92768 1.20685 0.89257 0.76147 0.84563 1.90736 1.14938 1.48301 1.86585 1.46064 1.10633 1.75624 1.06042 1.21346 0.92871 1.02575 0.82656 1.22365 0.98300 0.97935 0.93886 0.89189 1.22480 1.01074 0.96455 0.96272 1.22902 1.00362 0.93126 0.93073 1.64513 1.29513 1.20667 1.07097 1.22116 0.96330 0.96414 0.94870 1.19614 0.83205 0.90048 0.83469 1.90530 1.65237 1.23585 1.64843 1.42214 1.37904 1.08291 1.34561 1.19429 1.18836 0.89283 1.15793 0.86244 1.25034 0.96702 0.97700 0.96684 1.69618 1.27147 1.29929 1.25375 0.86678 0.79149 0.84263 0.79330 1.19594 1.20173 1.19569 1.23322 0.93476 1.02425 0.88717 0.88718 0.89181 0.88126 0.91821 0.91864 0.92846 0.92286 0.92904 0.88838 0.88941 0.76756 0.91059 0.91561 0.91475 0.91143 0.93997 0.90390 0.93411 0.88971 0.79729 0.91610 0.87177 0.94073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 13.12 29.02 0.38 -1.21 16 2 C -0.15 -1.37 6.69 -36.03 -0.24 -1.61 16 3 C -0.04 -0.33 1.81 -91.77 -0.17 -0.49 16 4 H 0.08 0.72 7.66 -51.93 -0.40 0.32 16 5 C -0.12 -0.65 5.38 -26.73 -0.14 -0.79 16 6 C -0.15 -0.89 9.80 37.16 0.36 -0.52 16 7 C -0.13 -0.87 5.18 -27.88 -0.14 -1.02 16 8 C 0.51 5.11 7.59 -10.98 -0.08 5.02 16 9 O -0.53 -7.45 14.03 5.56 0.08 -7.37 16 10 N -0.73 -6.38 5.43 -60.29 -0.33 -6.71 16 11 C 0.13 1.42 5.01 -4.04 -0.02 1.40 16 12 C -0.11 -1.17 3.09 -88.76 -0.27 -1.45 16 13 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 14 C -0.12 -1.17 6.32 -25.37 -0.16 -1.33 16 15 C 0.03 0.39 6.70 -2.75 -0.02 0.37 16 16 N -0.49 -7.75 5.10 -231.72 -1.18 -8.94 16 17 C 0.03 0.58 5.31 -4.98 -0.03 0.55 16 18 C 0.45 10.21 7.40 -10.98 -0.08 10.12 16 19 O -0.56 -14.76 13.89 5.55 0.08 -14.69 16 20 N -0.59 -14.07 5.09 -10.96 -0.06 -14.13 16 21 C -0.30 -8.62 10.16 -14.93 -0.15 -8.77 16 22 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -25.78 13.96 55.50 0.77 -25.01 16 25 Si 0.88 19.43 27.74 -169.99 -4.71 14.71 16 26 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 27 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 28 H -0.27 -5.45 6.52 56.52 0.37 -5.08 16 29 C 0.05 0.75 5.04 -1.79 -0.01 0.74 16 30 H 0.09 1.00 7.83 -52.48 -0.41 0.59 16 31 H 0.09 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.10 0.82 8.06 -52.49 -0.42 0.40 16 33 H 0.06 0.33 8.14 -51.92 -0.42 -0.10 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.38 7.31 -51.93 -0.38 0.00 16 37 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.40 2.39 8.41 -40.82 -0.34 2.05 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 0.79 8.02 -51.93 -0.42 0.38 16 43 H 0.07 0.60 7.76 -51.93 -0.40 0.19 16 44 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 45 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 46 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 47 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 48 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 49 H 0.37 7.77 5.76 -40.82 -0.24 7.53 16 50 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 51 H 0.11 2.09 6.46 -51.93 -0.34 1.75 16 52 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 LS Contribution 414.24 15.07 6.24 6.24 Total: -1.00 -34.09 414.24 -9.18 -43.27 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -9.20 Total: 10.54 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: -0.87 Total: 2.07 kcal Atomic # 7 Polarization: -53.99 SS G_CDS: -0.79 Total: -54.78 kcal Atomic # 8 Polarization: -22.21 SS G_CDS: 0.16 Total: -22.06 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.71 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.09 -9.18 -43.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.787 kcal (2) G-P(sol) polarization free energy of solvation -34.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds