Wall clock time and date at job start Tue Mar 31 2020 20:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50698 * 119.99960 * 2 1 4 4 H 1.09005 * 109.47141 * 0.02562 * 3 2 1 5 5 C 1.53001 * 109.47511 * 119.99594 * 3 2 1 6 6 C 1.52995 * 109.47396 * 293.50040 * 5 3 2 7 7 C 1.53003 * 109.47363 * 239.99852 * 3 2 1 8 8 C 1.50699 * 109.46577 * 63.70252 * 7 3 2 9 9 O 1.21278 * 120.00688 * 358.18793 * 8 7 3 10 10 N 1.34781 * 119.99561 * 178.18594 * 8 7 3 11 11 C 1.46500 * 119.99785 * 180.02562 * 10 8 7 12 12 C 1.53008 * 109.47011 * 179.97438 * 11 10 8 13 13 H 1.08992 * 110.64329 * 54.29660 * 12 11 10 14 14 C 1.54597 * 110.72125 * 291.14652 * 12 11 10 15 15 C 1.53997 * 105.14027 * 219.68307 * 14 12 11 16 16 N 1.47904 * 107.05629 * 358.77975 * 15 14 12 17 17 C 1.46889 * 110.99968 * 145.84420 * 16 15 14 18 18 C 1.50705 * 109.47007 * 183.40440 * 17 16 15 19 19 O 1.21293 * 120.00077 * 353.28445 * 18 17 16 20 20 N 1.34782 * 119.99949 * 173.28102 * 18 17 16 21 21 C 1.37094 * 119.99915 * 180.02562 * 20 18 17 22 22 H 1.07997 * 119.99872 * 359.97438 * 21 20 18 23 23 C 1.38954 * 119.99821 * 180.02562 * 21 20 18 24 24 N 1.31408 * 119.99809 * 180.02562 * 23 21 20 25 25 Si 1.86798 * 120.00168 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46924 * 90.00203 * 25 23 21 27 27 H 1.48502 * 109.47023 * 210.00590 * 25 23 21 28 28 H 1.48505 * 109.47043 * 330.00620 * 25 23 21 29 29 C 1.48731 * 105.94345 * 25.19792 * 16 15 14 30 30 H 1.08004 * 120.00693 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00030 * 179.97438 * 1 2 3 32 32 H 1.08000 * 120.00340 * 179.97438 * 2 1 3 33 33 H 1.09009 * 109.46793 * 53.49349 * 5 3 2 34 34 H 1.08998 * 109.47671 * 173.49228 * 5 3 2 35 35 H 1.09003 * 109.46906 * 295.79816 * 6 5 3 36 36 H 1.09002 * 109.47265 * 55.79836 * 6 5 3 37 37 H 1.09000 * 109.47681 * 175.79849 * 6 5 3 38 38 H 1.08996 * 109.46755 * 303.71037 * 7 3 2 39 39 H 1.08993 * 109.47078 * 183.70429 * 7 3 2 40 40 H 0.96999 * 119.99998 * 0.02562 * 10 8 7 41 41 H 1.08993 * 109.47612 * 299.99616 * 11 10 8 42 42 H 1.09004 * 109.47258 * 60.00452 * 11 10 8 43 43 H 1.09004 * 110.31421 * 338.60229 * 14 12 11 44 44 H 1.09007 * 110.31059 * 100.67163 * 14 12 11 45 45 H 1.08999 * 109.91672 * 118.12976 * 15 14 12 46 46 H 1.09001 * 109.91902 * 239.23134 * 15 14 12 47 47 H 1.08996 * 109.47210 * 303.40367 * 17 16 15 48 48 H 1.09005 * 109.47177 * 63.40580 * 17 16 15 49 49 H 0.97005 * 119.99757 * 0.02562 * 20 18 17 50 50 H 0.96997 * 120.00102 * 179.97438 * 24 23 21 51 51 H 1.09000 * 110.83985 * 202.57653 * 29 16 15 52 52 H 1.09003 * 110.58422 * 79.38540 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 0.0005 5 6 2.9430 1.3863 1.2493 6 6 2.0560 1.4686 2.4931 7 6 2.9431 1.3862 -1.2492 8 6 2.0706 1.3979 -2.4779 9 8 0.8659 1.3134 -2.3672 10 7 2.6293 1.5025 -3.7000 11 6 1.7812 1.5144 -4.8945 12 6 2.6584 1.6416 -6.1416 13 1 3.4185 0.8607 -6.1580 14 6 3.3107 3.0415 -6.2112 15 6 3.2538 3.4384 -7.6980 16 7 2.6327 2.3098 -8.4248 17 6 1.8187 2.7917 -9.5486 18 6 1.1367 1.6230 -10.2122 19 8 1.4046 0.4905 -9.8705 20 7 0.2290 1.8364 -11.1855 21 6 -0.3918 0.7733 -11.7888 22 1 -0.1532 -0.2351 -11.4845 23 6 -1.3272 0.9933 -12.7925 24 7 -1.9226 -0.0257 -13.3705 25 14 -1.7393 2.7374 -13.3193 26 1 -0.8303 3.1503 -14.4186 27 1 -3.1457 2.7922 -13.7928 28 1 -1.5694 3.6563 -12.1651 29 6 1.7945 1.5931 -7.4269 30 1 -0.5401 0.9353 0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 1.8500 -0.9353 0.0004 33 1 3.5715 0.4977 1.3094 34 1 3.5732 2.2738 1.1930 35 1 1.4817 2.3948 2.4692 36 1 1.3739 0.6185 2.5099 37 1 2.6803 1.4512 3.3865 38 1 3.6066 0.5221 -1.2830 39 1 3.5371 2.2994 -1.2166 40 1 3.5929 1.5697 -3.7887 41 1 1.2105 0.5871 -4.9443 42 1 1.0958 2.3607 -4.8450 43 1 2.7460 3.7525 -5.6080 44 1 4.3449 2.9944 -5.8700 45 1 2.6484 4.3366 -7.8197 46 1 4.2615 3.6162 -8.0737 47 1 1.0670 3.4895 -9.1799 48 1 2.4598 3.2965 -10.2714 49 1 0.0150 2.7421 -11.4590 50 1 -2.5758 0.1278 -14.0709 51 1 1.6212 0.5620 -7.7351 52 1 0.8494 2.1144 -7.2751 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493228423.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:25:29 Heat of formation + Delta-G solvation = -84.042078 kcal Electronic energy + Delta-G solvation = -28782.152613 eV Core-core repulsion = 24780.576157 eV Total energy + Delta-G solvation = -4001.576456 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.07261 -40.61701 -39.31797 -37.68782 -36.16398 -35.79998 -33.80877 -33.22541 -32.59256 -31.39369 -30.22392 -28.66387 -26.88845 -25.68092 -24.68180 -22.49934 -22.37074 -21.36941 -21.26644 -21.15938 -20.39264 -20.20013 -17.95980 -17.90241 -17.24402 -16.79424 -16.75262 -16.46842 -16.22093 -16.02702 -15.63242 -15.45781 -15.10151 -14.91774 -14.72121 -14.60822 -14.39961 -14.29700 -14.12505 -13.96749 -13.63425 -13.23641 -13.01836 -12.96562 -12.90251 -12.76504 -12.45771 -12.38672 -12.18813 -12.02596 -12.02249 -11.99439 -11.88039 -11.66705 -11.50334 -11.48220 -11.34587 -10.85774 -10.36043 -10.25375 -10.09916 -9.92282 -9.32237 -8.42781 -6.03571 1.28266 1.33810 1.42599 1.55052 1.78177 1.93463 2.21312 2.23458 2.68192 3.13023 3.18643 3.62683 3.71733 3.85812 3.86619 3.92268 3.94563 4.15187 4.30345 4.32347 4.34729 4.38361 4.40915 4.42188 4.48409 4.56695 4.61504 4.68035 4.72219 4.77443 4.82146 4.86964 4.99334 5.03299 5.08367 5.08516 5.11410 5.20803 5.23946 5.31362 5.41161 5.47991 5.50501 5.51566 5.84647 5.86730 5.93043 6.05925 6.07918 6.58197 6.66142 6.86829 7.37909 7.38530 7.95130 8.74894 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019319 B = 0.001823 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.001900 B =15352.633959 C =16185.756905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.147 4.147 3 C -0.045 4.045 4 H 0.060 0.940 5 C -0.110 4.110 6 C -0.155 4.155 7 C -0.126 4.126 8 C 0.500 3.500 9 O -0.577 6.577 10 N -0.717 5.717 11 C 0.139 3.861 12 C -0.089 4.089 13 H 0.092 0.908 14 C -0.113 4.113 15 C 0.032 3.968 16 N -0.516 5.516 17 C 0.046 3.954 18 C 0.448 3.552 19 O -0.606 6.606 20 N -0.592 5.592 21 C -0.328 4.328 22 H 0.055 0.945 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.965 3.035 26 H -0.255 1.255 27 H -0.275 1.275 28 H -0.233 1.233 29 C 0.045 3.955 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.046 0.954 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.125 0.875 40 H 0.416 0.584 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.056 0.944 46 H 0.094 0.906 47 H 0.075 0.925 48 H 0.122 0.878 49 H 0.389 0.611 50 H 0.279 0.721 51 H 0.061 0.939 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.222 13.063 27.688 34.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.164 4.164 3 C -0.064 4.064 4 H 0.078 0.922 5 C -0.147 4.147 6 C -0.212 4.212 7 C -0.165 4.165 8 C 0.288 3.712 9 O -0.456 6.456 10 N -0.371 5.371 11 C 0.014 3.986 12 C -0.109 4.109 13 H 0.110 0.890 14 C -0.151 4.151 15 C -0.095 4.095 16 N -0.241 5.241 17 C -0.086 4.086 18 C 0.236 3.764 19 O -0.490 6.490 20 N -0.234 5.234 21 C -0.457 4.457 22 H 0.073 0.927 23 C -0.213 4.213 24 N -0.575 5.575 25 Si 0.785 3.215 26 H -0.179 1.179 27 H -0.200 1.200 28 H -0.157 1.157 29 C -0.083 4.083 30 H 0.099 0.901 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.253 0.747 41 H 0.061 0.939 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.119 0.881 45 H 0.074 0.926 46 H 0.112 0.888 47 H 0.093 0.907 48 H 0.140 0.860 49 H 0.224 0.776 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.804 11.832 27.609 33.488 hybrid contribution -1.458 0.538 -0.910 1.801 sum 13.346 12.371 26.699 32.311 Atomic orbital electron populations 1.23666 0.96720 1.00705 1.01128 1.22869 0.95733 0.98278 0.99570 1.20163 0.96631 0.95399 0.94165 0.92193 1.21515 0.97483 1.03276 0.92427 1.21785 1.00003 1.01369 0.98030 1.21761 0.98106 1.06848 0.89810 1.21437 0.89108 0.74939 0.85675 1.90734 1.17230 1.50415 1.87239 1.45901 1.11304 1.74897 1.04964 1.21054 0.92968 1.00780 0.83777 1.22169 0.97377 0.99841 0.91475 0.88981 1.22473 1.02790 0.94586 0.95270 1.23045 1.00849 0.91932 0.93692 1.64467 1.29207 1.23022 1.07390 1.22064 0.97243 0.93590 0.95677 1.20890 0.81931 0.91371 0.82190 1.90525 1.66258 1.26388 1.65783 1.42044 1.38350 1.07939 1.35041 1.18997 1.20869 0.88290 1.17593 0.92704 1.26111 0.95538 1.03921 0.95775 1.69802 1.27984 1.33483 1.26203 0.85367 0.78831 0.77124 0.80206 1.17935 1.20031 1.15680 1.23147 0.94394 0.99701 0.91064 0.90120 0.89276 0.87139 0.90722 0.90086 0.93359 0.93513 0.91791 0.86542 0.85747 0.74667 0.93908 0.92455 0.90337 0.88093 0.92556 0.88778 0.90712 0.85982 0.77560 0.91147 0.92040 0.94822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.93 13.12 67.79 0.89 -3.04 16 2 C -0.15 -2.56 6.69 25.65 0.17 -2.38 16 3 C -0.04 -0.60 1.81 -11.54 -0.02 -0.62 16 4 H 0.06 1.06 7.66 -2.38 -0.02 1.04 16 5 C -0.11 -0.93 5.38 30.59 0.16 -0.77 16 6 C -0.15 -1.61 9.80 71.98 0.71 -0.90 16 7 C -0.13 -1.24 5.18 29.85 0.15 -1.09 16 8 C 0.50 9.37 7.59 87.66 0.67 10.03 16 9 O -0.58 -16.51 14.03 -3.02 -0.04 -16.55 16 10 N -0.72 -11.08 5.43 -463.05 -2.51 -13.60 16 11 C 0.14 3.01 5.01 86.38 0.43 3.45 16 12 C -0.09 -1.87 3.09 -9.59 -0.03 -1.90 16 13 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 14 C -0.11 -1.67 6.32 31.47 0.20 -1.47 16 15 C 0.03 0.60 6.70 86.45 0.58 1.18 16 16 N -0.52 -15.34 5.10 -887.03 -4.53 -19.87 16 17 C 0.05 1.43 5.31 85.56 0.45 1.89 16 18 C 0.45 20.61 7.40 87.66 0.65 21.26 16 19 O -0.61 -33.83 13.89 -3.07 -0.04 -33.88 16 20 N -0.59 -28.40 5.09 -306.97 -1.56 -29.97 16 21 C -0.33 -19.52 10.16 84.04 0.85 -18.67 16 22 H 0.05 3.88 7.39 -2.91 -0.02 3.86 16 23 C -0.01 -0.83 5.50 84.93 0.47 -0.37 16 24 N -0.93 -57.00 13.96 21.66 0.30 -56.69 16 25 Si 0.96 39.29 27.74 68.60 1.90 41.20 16 26 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 27 H -0.28 -11.14 7.11 99.48 0.71 -10.43 16 28 H -0.23 -8.05 6.52 99.48 0.65 -7.40 16 29 C 0.05 1.43 5.04 86.61 0.44 1.86 16 30 H 0.08 1.89 7.83 -2.91 -0.02 1.87 16 31 H 0.09 1.81 8.06 -2.91 -0.02 1.78 16 32 H 0.11 1.68 8.06 -2.91 -0.02 1.65 16 33 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.08 0.44 8.14 -2.39 -0.02 0.43 16 35 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.59 7.31 -2.39 -0.02 0.58 16 37 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.42 3.49 8.41 -92.71 -0.78 2.71 16 41 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.06 1.36 8.02 -2.38 -0.02 1.34 16 43 H 0.08 1.04 7.76 -2.38 -0.02 1.02 16 44 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.06 0.94 7.68 -2.39 -0.02 0.92 16 46 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 47 H 0.08 1.98 7.99 -2.39 -0.02 1.96 16 48 H 0.12 3.16 8.14 -2.38 -0.02 3.14 16 49 H 0.39 15.47 5.76 -92.70 -0.53 14.94 16 50 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 51 H 0.06 2.52 6.46 -2.39 -0.02 2.51 16 52 H 0.03 1.07 7.92 -2.39 -0.02 1.05 16 Total: -1.00 -83.87 414.24 -0.18 -84.06 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: -0.47 Total: 36.84 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: 6.77 Total: 8.46 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -8.30 Total: -120.12 kcal Atomic # 8 Polarization: -50.34 SS G_CDS: -0.09 Total: -50.42 kcal Atomic # 14 Polarization: 39.29 SS G_CDS: 1.90 Total: 41.20 kcal Total: -83.87 -0.18 -84.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493228423.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.015 kcal (2) G-P(sol) polarization free energy of solvation -83.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds